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Claude Opus 5.5
Journal Formatter and Journal Finder as native tabs of the suite (work in progress)
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"""Role classification shared by the DOCX/PDF readers and the template analyser."""
from __future__ import annotations
import re
from dataclasses import dataclass
from typing import Optional
from . import model as M
KNOWN_SECTIONS = [
"introduction", "related work", "related works", "literature review", "review of literature",
"background", "preliminaries", "methodology", "methods", "method", "materials and methods",
"proposed method", "proposed methodology", "proposed model", "proposed system", "proposed framework",
"proposed approach", "system model", "problem formulation", "research methodology",
"experimental setup", "experiments", "experimental results", "results", "discussion",
"results and discussion", "results and discussions", "performance evaluation", "analysis",
"conclusion", "conclusions", "conclusion and future work", "conclusions and future work",
"future work", "limitations", "implications", "theoretical implications", "practical implications",
"acknowledgment", "acknowledgments", "acknowledgement", "acknowledgements",
"references", "bibliography", "appendix", "appendices", "data availability",
"data availability statement", "conflict of interest", "conflicts of interest",
"declaration of competing interest", "funding", "author contributions", "credit authorship contribution statement",
"ethics statement", "nomenclature", "abbreviations", "hypotheses", "hypotheses development",
"theoretical framework", "theoretical background", "conceptual framework", "case study",
"dataset", "datasets", "evaluation", "simulation results", "findings",
]
UNNUMBERED = {
"acknowledgment", "acknowledgments", "acknowledgement", "acknowledgements", "references",
"bibliography", "data availability", "data availability statement", "conflict of interest",
"conflicts of interest", "declaration of competing interest", "funding", "author contributions",
"credit authorship contribution statement", "ethics statement", "nomenclature", "abbreviations",
"appendix", "appendices",
}
REF_HEADINGS = {"references", "bibliography", "literature cited", "works cited", "reference", "list of references"}
ROMAN = r"(?:X{0,3})(?:IX|IV|V?I{0,3})"
NUM_RE = re.compile(
r"^\s*(?:"
r"(?P<num>\d{1,2}(?:\.\d{1,2}){0,3})\.?\)?"
r"|(?P<roman>" + ROMAN + r")\."
r"|(?P<alpha>[A-H])\."
r"|(?P<paren>\d{1,2})\)"
r")\s+(?P<rest>\S.*)$"
)
CAPTION_RE = re.compile(
r"^\s*(?P<kind>fig\.?|figure|table|tab\.)\s*(?P<num>\d+|[IVXLC]+)\s*(?P<sep>[\.:\-–—|]\s*)?(?P<rest>.*)$",
re.I | re.S,
)
CAPTION_VERBS = {
"shows", "show", "illustrates", "presents", "depicts", "depict", "demonstrates", "compares", "summarizes",
"summarises", "lists", "gives", "reports", "displays", "indicates", "contains", "provides", "describes",
"reveals", "plots", "highlights", "outlines", "is", "are", "was", "were", "and", "also", "in", "of", "confirms",
"represents", "exhibits", "details", "clearly", "further", "below", "above", "visualizes", "visualises",
"tabulates", "explains", "suggests", "has", "have", "can", "will", "we", "it", "the", "a", "an", "to",
}
ARTICLE_TYPE_RE = re.compile(
r"^\s*(?:(?:original|research|review|short|brief|technical|case|mini|systematic|full[- ]length|regular|"
r"invited|perspective|empirical|conceptual|methodological)\s+)*(?:research\s+)?(?:article|paper|communication|"
r"report|note|review|letter|study|manuscript)s?\s*$|"
r"^\s*(?:running\s+(?:head|title)|short\s+title|article\s+type|manuscript\s+(?:type|id|no|number)|"
r"paper\s+type|received|accepted|published|available\s+online|doi|issn|e-?issn|vol\.|volume)\b",
re.I,
)
TITLE_PREFIX_RE = re.compile(r"^\s*(?:paper\s+|article\s+|manuscript\s+)?title\s*[:\-–—]\s*(?P<rest>\S.*)$", re.I | re.S)
def is_caption_text(t: str, style: str = "") -> bool:
"""Is a paragraph a figure/table caption (and not a sentence that merely starts with 'Figure 2 shows…')?"""
cm = CAPTION_RE.match(t)
if not cm or len(t) > 600:
return False
if (style or "").lower().startswith("caption"):
return True
rest = cm.group("rest").strip()
first = re.match(r"[A-Za-z]+", rest)
first_word = first.group(0).lower() if first else ""
if not rest:
return len(t) < 24 # "Table 1" alone: text follows on the next line
if cm.group("sep"):
return first_word not in CAPTION_VERBS or rest[:1].isupper()
if cm.group("kind").isupper() and len(cm.group("kind")) > 2:
return True # "TABLE 2 HYPER-PARAMETERS"
# no separator: "Fig 2 Training loss …" → caption ; "Figure 2 shows …" → sentence
return (rest[:1].isupper() or rest[:1] in "(“\"'") and first_word not in CAPTION_VERBS
ABSTRACT_RE = re.compile(r"^\s*abstract\s*(?:[:\-–—.]\s*)?(?P<rest>.*)$", re.I | re.S)
KEYWORDS_RE = re.compile(r"^\s*(?:key\s*-?\s*words?|index\s+terms)\s*(?:[:\-–—.]\s*)?(?P<rest>.*)$", re.I | re.S)
STRUCT_ABS_RE = re.compile(
r"^\s*(?P<lab>purpose|design/methodology/approach|design|methodology|approach|findings|"
r"research limitations/implications|research limitations|practical implications|social implications|"
r"originality/value|originality|value|background|objective|objectives|aim|aims|methods|results|"
r"conclusions?|significance)\s*[:\-–—]\s*(?P<rest>\S.*)$",
re.I | re.S,
)
AFFIL_HINT = re.compile(
r"universit|department|dept\.|institute|college|school of|faculty|laborator|centre|center for|"
r"@|e-?mail|india|china|usa|u\.s\.a|united kingdom|\bUK\b|road|street|pin\b|zip|corresponding",
re.I,
)
ROMAN_VALUES = {"I": 1, "V": 5, "X": 10, "L": 50, "C": 100}
def roman_to_int(s: str) -> int:
s = s.upper()
total, prev = 0, 0
for ch in reversed(s):
v = ROMAN_VALUES.get(ch, 0)
total = total - v if v < prev else total + v
prev = max(prev, v)
return total
def int_to_roman(n: int) -> str:
vals = [(100, "C"), (90, "XC"), (50, "L"), (40, "XL"), (10, "X"), (9, "IX"), (5, "V"), (4, "IV"), (1, "I")]
out = ""
for v, s in vals:
while n >= v:
out += s
n -= v
return out
def norm(text: str) -> str:
return re.sub(r"\s+", " ", text).strip()
def strip_heading_number(text: str):
"""Return (level_from_numbering or 0, bare heading text)."""
t = norm(text)
m = NUM_RE.match(t)
if not m:
return 0, t
rest = m.group("rest")
if m.group("num"):
return m.group("num").count(".") + 1, rest
if m.group("roman") and m.group("roman") != "":
return 1, rest
if m.group("alpha"):
return 2, rest
if m.group("paren"):
return 3, rest
return 0, t
def known_section(text: str) -> Optional[str]:
_, bare = strip_heading_number(text)
key = re.sub(r"[^a-z/ ]", "", bare.lower()).strip()
if key in KNOWN_SECTIONS or key in REF_HEADINGS:
return key
return None
def looks_like_heading(text: str, bold: bool, size: float, body_size: float, style: str) -> int:
"""Return heading level (1..4) or 0."""
t = norm(text)
if not t or len(t) > 160:
return 0
s = (style or "").lower()
m = re.match(r"heading\s*(\d)", s)
if m:
return min(int(m.group(1)), 4)
if s in ("title", "subtitle"):
return 0
level, bare = strip_heading_number(t)
words = len(bare.split())
# pseudo-code / step lines ("1. Initialize population", "2. x ← x + 1") are not headings
from .algo import CODEISH_RE, STEP_RE
if STEP_RE.match(bare) and not known_section(t) or CODEISH_RE.search(bare) or re.search(r"[=←∑∈≤≥]", bare):
return 0
ends_sentence = bare.endswith((".", ",", ";")) and not bare.endswith("etc.")
ks = known_section(t)
if ks and words <= 8:
return level or 1
if level and words <= 16 and not ends_sentence and (bold or (size and size > body_size + 0.4) or bare[:1].isupper()):
# numbered short line: very likely a heading; guard against numbered list items
if bold or (size and size > body_size + 0.4) or bare.isupper() or words <= 8:
return level
if bold and words <= 12 and not ends_sentence and len(t) < 100 and not CAPTION_RE.match(t):
return 2 if not (size and size > body_size + 1) else 1
return 0
@dataclass
class ParaInfo:
text: str
style: str = ""
size: float = 0.0
bold: bool = False
is_list: bool = False
list_ordered: bool = False
list_level: int = 0
align: str = ""
is_title_style: bool = False
class RoleClassifier:
"""Streaming classifier: feed paragraphs in reading order."""
def __init__(self, body_size: float = 0.0, max_size: float = 0.0):
self.state = "front" # front -> abstract -> body -> refs
self.body_size = body_size
self.max_size = max_size
self.seen_title = False
self.count = 0
def feed(self, p: ParaInfo):
"""Return (role, level, label, cleaned_text_or_None)."""
t = norm(p.text)
self.count += 1
style = (p.style or "").lower()
if not t:
return None, 0, "", None
# captions are recognisable anywhere
cm = CAPTION_RE.match(t)
if cm and self.state not in ("refs", "front") and is_caption_text(t, style):
return M.CAPTION, 0, cm.group("kind").lower(), None
# explicit styles (Word templates / pandoc output)
if style == "bibliography":
self.state = "refs"
return M.REFERENCE, 0, "", None
if self.state in ("front", "abstract"):
if style == "author":
self.seen_title = True
return M.AUTHOR, 0, "", None
if style in ("date",):
return M.OTHER_FRONT, 0, "", None
if style in ("abstract title", "abstracttitle"):
self.state = "abstract"
return "abstract_label", 0, "", ""
if style == "abstract":
self.state = "abstract"
am = ABSTRACT_RE.match(t)
if am and t.lower().startswith("abstract"):
rest = am.group("rest").strip()
return (M.ABSTRACT, 0, "", rest) if rest else ("abstract_label", 0, "", "")
km = KEYWORDS_RE.match(t)
if km:
self.state = "body_pending"
return M.KEYWORDS, 0, "", km.group("rest").strip()
return M.ABSTRACT, 0, "", None
if self.state == "refs":
lvl = looks_like_heading(t, p.bold, p.size, self.body_size, p.style)
ks = known_section(t)
if lvl and ks and ks not in REF_HEADINGS:
self.state = "body"
return M.HEADING, lvl, "", None
if lvl and (t.lower().startswith("appendix") or style.startswith("heading")):
self.state = "body"
return M.HEADING, lvl, "", None
return M.REFERENCE, 0, "", None
# ---- front matter ----
if self.state in ("front", "abstract"):
am = ABSTRACT_RE.match(t)
if am and (len(t) < 15 or am.group("rest")) and t.lower().startswith("abstract"):
self.state = "abstract"
rest = am.group("rest").strip()
if not rest:
return "abstract_label", 0, "", ""
return M.ABSTRACT, 0, "", rest
km = KEYWORDS_RE.match(t)
if km and len(t) < 700:
self.state = "body_pending"
return M.KEYWORDS, 0, "", km.group("rest").strip()
if self.state == "abstract":
lvl = looks_like_heading(t, p.bold, p.size, self.body_size, p.style)
if lvl and known_section(t):
self.state = "body"
return M.HEADING, lvl, "", None
sm = STRUCT_ABS_RE.match(t)
if sm:
return M.ABSTRACT, 0, sm.group("lab").strip(), sm.group("rest").strip()
return M.ABSTRACT, 0, "", None
# still before the abstract
lvl = looks_like_heading(t, p.bold, p.size, self.body_size, p.style)
if lvl and known_section(t) and self.seen_title:
self.state = "body"
return M.HEADING, lvl, "", None
if not self.seen_title:
tm = TITLE_PREFIX_RE.match(t)
if tm:
self.seen_title = True
return M.TITLE, 0, "", tm.group("rest").strip()
# labels above the title: "Original Research Article", "Running head: …", journal banner lines
if ARTICLE_TYPE_RE.match(t) and not p.is_title_style and style != "title":
return M.OTHER_FRONT, 0, "", None
if (self.max_size >= self.body_size + 3 and p.size < self.max_size - 1.5 and len(t.split()) <= 6
and not p.is_title_style and style != "title"):
return M.OTHER_FRONT, 0, "", None
if p.is_title_style or style == "title" or (
len(t) < 300 and (p.size >= max(self.body_size + 2, self.max_size - 0.5) or p.bold or self.count <= 2)
):
self.seen_title = True
return M.TITLE, 0, "", None
# long first paragraph: no title detected -> treat as body start
if len(t) > 300:
self.state = "body"
return M.PARA, 0, "", None
self.seen_title = True
return M.TITLE, 0, "", None
if style == "subtitle":
return M.OTHER_FRONT, 0, "", None
if AFFIL_HINT.search(t):
return M.AFFIL, 0, "", None
if len(t) < 400 and not t.endswith(".") or re.search(r"\b(and|&)\b|,", t) and len(t) < 300:
return M.AUTHOR, 0, "", None
if len(t) > 400:
self.state = "body"
return M.PARA, 0, "", None
return M.OTHER_FRONT, 0, "", None
# ---- body ----
if self.state == "body_pending":
self.state = "body"
lvl = looks_like_heading(t, p.bold, p.size, self.body_size, p.style)
if lvl and not p.is_list:
ks = known_section(t)
if ks in REF_HEADINGS:
self.state = "refs"
return M.HEADING, lvl, "", None
if p.is_list:
return M.LIST, p.list_level, "", None
return M.PARA, 0, "", None