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"category": "structure_retrieval",
"benchmarks": [
{
"name": "PDB_TP53_STRUCTURE_AVAILABLE",
"category": "structure_retrieval",
"description": "Human p53 must resolve to at least one experimental PDB structure.",
"input": {
"accession": "P04637"
},
"section": "alphafold",
"expected_output": {
"structure_available": true
},
"tolerance": {
"structure_available": 0
},
"ground_truth": "Multiple human p53 PDB entries exist (e.g. 4MZR, 1TUP).",
"citation": "Berman H.M. et al. Nucleic Acids Res. 2000 (wwPDB); Cho Y. et al. Science 1994.",
"source": "RCSB PDB",
"stage": "curated",
"difficulty": "easy",
"version": 1
},
{
"name": "ALPHAFOLD_TP53_AVAILABLE",
"category": "structure_retrieval",
"description": "AlphaFold DB must have a predicted structure for human p53 (AF-P04637-F1).",
"input": {
"accession": "P04637"
},
"section": "alphafold",
"expected_output": {
"structure_available": true
},
"tolerance": {
"structure_available": 0
},
"ground_truth": "AlphaFold DB predicts p53: AF-P04637-F1-model_v4.",
"citation": "Jumper J. et al. Nature 2021; Varadi M. et al. Nucleic Acids Res. 2022.",
"source": "AlphaFold DB",
"stage": "curated",
"difficulty": "easy",
"version": 1
},
{
"name": "ALPHAFOLD_INSULIN_AVAILABLE",
"category": "structure_retrieval",
"description": "AlphaFold DB must have a predicted structure for human insulin (AF-P01308-F1).",
"input": {
"accession": "P01308"
},
"section": "alphafold",
"expected_output": {
"structure_available": true
},
"tolerance": {
"structure_available": 0
},
"ground_truth": "AlphaFold DB predicts insulin: AF-P01308-F1-model_v4.",
"citation": "Jumper J. et al. Nature 2021; Varadi M. et al. Nucleic Acids Res. 2022.",
"source": "AlphaFold DB",
"stage": "curated",
"difficulty": "easy",
"version": 1
}
]
}
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