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Commit History
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Add Reactome diagrams, KEGG search, pathway enrichment (pipeline + standalone)
8ce1e37
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design.md + rules.md compliance: dark theme, teal palette, pulsing dot, Pydantic models, api.ts routing, config fixes, db/max_hits threading, Supabase migration 004
f42f5a6 -
Add RefSeq->UniProt mapping step in pipeline + demo uniprot_accession
c080f36 -
Add startup resume hook for stuck jobs + persist NCBI RID
94ca7cd -
fix: logger.exception instead of stderr, fail job on thread crash
be02b10 -
fix: move first _set_step into try block + stderr fallback in run_pipeline_sync
2cb3e54 -
fix: E-value underflow, AlphaFold step, steps_completed append, UniProt always runs
3154548 -
fix: remove current_step_label and error_message refs — columns missing from jobs table
e5d75ff
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Deploy prep: Render config + Dockerfile, refactored backend auth flow, dashboard, landing page, error states, guest flow
76fb273
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Core pipeline testability: progress callback, rate limiter 429, history table
- Pipeline engine: progress_callback fires after BLAST/UniProt/AlphaFold, Pydantic models normalized to plain dict (fixes 'runs but no result') - Worker: async Supabase REST PATCH for real-time step progress - Rate limiter: raises HTTP 429 with Content-Range parsing, fail-open - History: table layout with clickable rows -> /results/[jobId] - BLAST: add stype param, fix email (EBI rejects invalid domains) - Celery: Redis ping check so fallback to sync thread works - UI: progress bar + percentage in JobProgress, nav link fixes - Auth: removed for testing (will re-enable in Phase 1) - Status: changed pending -> queued to match DB check constraint88aa370 -
Initial commit: Bio Nexus pipeline engine — BLAST + UniProt + AlphaFold + AI interpretation (Phase 1)
5a0e691