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bio-nexus-api / bioai-platform /frontend /src /app /(dashboard) /analyze

Commit History

  1. feat: molecular docking (AutoDock Vina) + docs site + Sentry + cache stats + Phase 2 docs update⁠

    Samad14
    fb8c550

  1. fix: replace dead embed.rcsb.org iframe with PDBe Mol* viewer

    Samad14
    7d2b5e1

  2. fix: default import PhyloTreeViewer in alignment, report, and PipelineResults

    Samad14
    fe5ce87

  3. feat: dedicated phylo router (NJ/UPGMA/ML), local PhyML binary, standalone phylo page, PhyloTreeViewer redesign

    Samad14
    07e58f6

  1. feat: in-memory pipeline v2 with MSA, phylo tree, domains; PipelineResults component; standalone phylo page; report page; wizard step checkboxes

    Samad14
    990c867

  2. fix: use embed.rcsb.org instead of www.rcsb.org for clean 3D viewer iframe

    Samad14
    567f164

  3. feat: add PNG/TSV/JSON/CSV/FASTA export to all 8 tool components⁠

    Samad14
    342fa92

  1. feat: domains, interactions, primers, structure analysis, wizard, phylo tree, conservation⁠

    Samad14
    bac1801

  1. Add Reactome diagrams, KEGG search, pathway enrichment (pipeline + standalone)

    Samad14
    8ce1e37

  1. Fix structure viewer iframe: embed.rcsb.org is dead → use www.rcsb.org/3d-view/{pdbId}

    Samad14
    62d0f3d

  2. Fix: alignment sample sequences, reverse complement tool, BLAST program filtering, sample buttons on structure/pathway pages

    Samad14
    aa498ec

  3. Fix Phase 1 endpoints: resolve UniProt→PDB in structure viewer, use proper Reactome search, surface real backend errors in frontend

    Samad14
    13df1a1

  4. Polish: restyle blast/dashboard/jobs/history/results pages to dark theme, fix Loader2 icons, update result components

    Samad14
    2a12412

  5. Sprint 3-7: Alignment, Structure Viewer, Pathway Analysis, Utility Tools, analyze page fully live

    Samad14
    f0b48d6

  6. Sprint 1-2: JWT auth middleware + UniProt dedicated page

    Samad14
    f8dfa58

  7. fix: animate='visible' -> animate='show' to match fadeUp variant

    Samad14
    b008d9f

  8. fix: rename lucide-react icons (LoaderCircle, CircleCheck), remove unused imports, replace Set.isSubsetOf

    Samad14
    5242ec8

  9. full dark migration: CSS overrides for all legacy classes, framer-motion animations across every page/component, rebrand to Bio Nexus

    Samad14
    2f67ecf

  10. named exports, any->unknown, theme toggle (light/dark), dark mode fixes, error extractor, deleted pipline/ typo dir

    Samad14
    973dd4c

  1. fix: Analyze button on retrieve page + sessionStorage handoff to blast wizard

    Samad14
    6c461b6

  2. fix: use Array.from instead of Set spread for TS compatibility

    Samad14
    3bc04b9

  3. fix: FASTA header text bleeding into sequence validation, add IUPAC codes U O B Z X J

    Samad14
    57fa457

  1. Deploy prep: Render config + Dockerfile, refactored backend auth flow, dashboard, landing page, error states, guest flow

    Samad14
    76fb273

  1. Core pipeline testability: progress callback, rate limiter 429, history table⁠

    Samad14
    88aa370

  2. Initial commit: Bio Nexus pipeline engine — BLAST + UniProt + AlphaFold + AI interpretation (Phase 1)

    Samad14
    5a0e691