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Commit History
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Add Reactome diagrams, KEGG search, pathway enrichment (pipeline + standalone)
8ce1e37 -
Security, crash fixes, demo prep, dead code removal
- Auth guard: GET/DELETE /api/jobs/{id} now verify ownership (403 on mismatch) - Streaming auth: interpretStream() injects Supabase Bearer token - DELETE 404: return 404 if job never existed - JobProgress: fixed active step to show next pending step - Step names unified: worker → definition → frontend all match - Null-guards: BlastPanel, ScoreBars, UniprotPanel handle undefined/null data - ErrorBoundary: new class component wrapping dashboard layout - Silent catches: replaced .catch(noop) with user-visible error banner - Demo data: filled alignment strings for all hits; added hemoglobin + BRCA1 - History page: linked in sidebar nav (was orphaned) - pipeline_type default fixed: blast → protein_analysis - Axios timeout: added 30s timeout to api client - Dead code: removed 8 files (engine.py, results/export/waitlist routers, celery_app, redis service, registration tool, StructureViewer component) and 4 unused api.ts functions9a28cd0
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Polish: restyle blast/dashboard/jobs/history/results pages to dark theme, fix Loader2 icons, update result components
2a12412 -
full dark migration: CSS overrides for all legacy classes, framer-motion animations across every page/component, rebrand to Bio Nexus
2f67ecf -
dark mode: add missing CSS overrides (gradients, forms, badges, hover, bg-opacity, teal variants) + ThemeToggle on landing, auth, callback, shared pages
076e8f2 -
named exports, any->unknown, theme toggle (light/dark), dark mode fixes, error extractor, deleted pipline/ typo dir
973dd4c
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design.md + rules.md compliance: dark theme, teal palette, pulsing dot, Pydantic models, api.ts routing, config fixes, db/max_hits threading, Supabase migration 004
f42f5a6
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AlphaFold 3D viewer via 3Dmol.js — pLDDT confidence coloring, style selector, spin toggle
- Self-contained AlphaFoldViewer component (client-only, global namespace) - Loads 3Dmol-min.js on demand via <script> - Colors structure by per-residue pLDDT (B-factor column) using AF DB standard scheme - 4 display modes: cartoon·pLDDT, cartoon·spectrum, surface·pLDDT, stick·pLDDT - pLDDT confidence legend in footer - Wired into /results/[jobId] and /shared/[token]ffe46cc -
Initial commit: Bio Nexus pipeline engine — BLAST + UniProt + AlphaFold + AI interpretation (Phase 1)
5a0e691