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feat(primers): add NCBI gene search + sequence retrieval, oligo QC and in-silico PCR verification with recharts graphs
5d5e978
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fix: case-insensitive accession lookup - normalize to uppercase at entry points
- sequences.py: .upper() accession before detect_source and API calls - ncbi_service.py: .upper() accession in fetch_by_accession - uniprot.py: .upper() accession in run() - Fixes: p04637 vs P04637 producing different results / cache misses9be3066
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feat: molecular docking (AutoDock Vina) + docs site + Sentry + cache stats + Phase 2 docs update
- Molecular docking tool via AutoDock Vina (free, CPU-based, local binary) - Dockerfile: openbabel apt install + vina binary from GitHub releases - Backend: DockingTool (PDB fetch, obabel PDBQT conversion, vina subprocess, pose parser) - Backend: POST /api/docking/run + GET /api/docking/status/{job_id} - Frontend: analyze/docking/page.tsx — PDB ID + SMILES input, auto-detect binding pocket, results table with affinity color-coding, PDBe structure viewer - Frontend: docking card with 'New' badge added to analyze/page.tsx - Documentation site: /learn pages (10 topics + glossary), LearnPopover inline help, TutorialWalkthrough onboarding modal - Sentry error monitoring: sentry.client.config.ts, sentry.server.config.ts, next.config.js withSentryConfig, backend sentry_sdk init in main.py - Cache stats tracking: _cache_stats counters, from_cache flag, /api/admin/cache-stats endpoint, @ttl_cache on ncbi_service.search_by_name and pathway_enrichment - All .md docs (MASTER_PL…fb8c550
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feat: domains, interactions, primers, structure analysis, wizard, phylo tree, conservation
- Add backend routers: domains (InterPro), interactions (STRING-DB), primers (Primer3), structure_analysis (Ramachandran, SS pred, comparison) - Add frontend components: AnalysisWizard, PhyloTreeViewer, DomainArchitecture, StringDBViewer, PrimerDesigner, RamachandranPlot, SecondaryStructureViewer, StructureComparison, ConservationTrack - Add pages: /wizard, /analyze/domains, /analyze/interactions, /analyze/primers, /analyze/compare - Update analyze hub: 10 operations in 3 groups + wizard CTA - Update alignment page: visual phylo tree + conservation track - Update job results: Advanced Analysis tabs panel - Register all routers in main.py; add primer3-py to requirements; fix CORS & profilebac1801
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Deploy prep: Render config + Dockerfile, refactored backend auth flow, dashboard, landing page, error states, guest flow
76fb273