Commit History

fix: NGS fallback to Python aligner when native tools missing; add missing re import in sequence_utils
34b3c94

Samad14 commited on

refactor: require native samtools/minimap2, delete hand-rolled BAM/BAI code
2fe9546

Samad14 commited on

fix: correct BGZF virtual offsets in BAI, fix duplicate-read bug, install minimap2 everywhere
45a0eed

Samad14 commited on

fix(ngs): dynamic locus + SAM-first igv.js for reliable genome browser
132a669

Samad14 commited on

fix: repair BAI index generation and BAM record format for igv.js compatibility
bd1c698

Samad14 commited on

fix(ngs): correct BAM record format and BAI index for igv.js
70f89bb

Samad14 commited on

feat(ngs): pure-Python SAM to BAM converter with BGZF + BAI index for igv.js
0c59ad3

Samad14 commited on

fix: igv.js white screen — CIGAR ops, qual strings, locus format
a56b947

Samad14 commited on

feat: add igv.js genome browser + proper 6-step NGS pipeline
95e9035

Samad14 commited on

feat: add full 6-step NGS pipeline + fix sequencing WinError 193
5fa9145

Samad14 commited on