feat(branding): Synteny rebrand — new identity, signal-coded palette, and pipeline icons

Add next/core-web-vitals ESLint config, fix unescaped entities

refactor(icons): migrate lucide-react to @phosphor-icons/react, remove dep

feat(frontend): roll design-system classes across all dashboard pages + fix sidebar toggle alignment

fix: remove opacity:0 flicker from all pages

feat: complete Phase 2 — API keys, share links, export, pipeline steps, guest upgrade

refactor: enhance dashboard with quick tools, jobs with filter tabs, settings with profile identity

Guest upgrade, DB migration, settings functional, full Phase 1 feature set

full dark migration: CSS overrides for all legacy classes, framer-motion animations across every page/component, rebrand to Bio Nexus

settings: mark notifications & danger zone as coming-soon, clean up unused state/imports

named exports, any->unknown, theme toggle (light/dark), dark mode fixes, error extractor, deleted pipline/ typo dir

design.md + rules.md compliance: dark theme, teal palette, pulsing dot, Pydantic models, api.ts routing, config fixes, db/max_hits threading, Supabase migration 004

Core pipeline testability: progress callback, rate limiter 429, history table

Initial commit: Bio Nexus pipeline engine — BLAST + UniProt + AlphaFold + AI interpretation (Phase 1)