feat(theme): dual light/dark mode with Apple light theme, toggle, and theme-aware viewers

fix(seq-tools): stop auto-scrolling on job completion, fix structure highlight & AlphaFold viewer loading

feat(seq-tools): motif categories & structure overlay, dot-plot scoring & features, cross-tool links

Refine design system: semantic color tokens, tiered motion, denser result cards, VinaLog toolbar

refactor(icons): migrate lucide-react to @phosphor-icons/react, remove dep

feat(frontend): HUD glass design system + clay components

Phase 0a: SSRF protection + auth on docking/sequencing, worker design doc

Fix color scheme switching, vina log parsing, icon dedup, dead code

Redesign Vina log panel + fix z-index overlay in docking viewer

DockingViewer: use correct pdbe-molstar viewerInstance API for representation switching

DockingViewer: full toolbar with representation/color switching, screenshot, camera controls

Fix Molstar drag: remove overflow-hidden, use direct container without absolute positioning

Fix loading overlay: detect Molstar via canvas element, add event listener, remove blocking z-index

Fix Molstar viewer: prevent double-init, fix container sizing, separate interaction updates

Fix DockingViewer: use pdbe-molstar web component instead of broken JS API

Docking viewer upgrade: Molstar GPU rendering, proper interaction geometry, 3D dashed-line rendering

feat: add interaction fingerprinting and 3Dmol.js viewer to molecular docking page