feat(design): bioluminescent green+violet palette and re-tuned landing hero

feat(theme): dual light/dark mode with Apple light theme, toggle, and theme-aware viewers

feat(seq-tools): share colored MSA viewer across BLAST job, alignment tool, report, shared and phylo surfaces

feat(alignment): show matched/mismatched/gaps/length stats across all alignment views via shared AlignmentStatsBar

Refine design system: semantic color tokens, tiered motion, denser result cards, VinaLog toolbar

refactor(icons): migrate lucide-react to @phosphor-icons/react, remove dep

style(theme): Geist fonts, AA-verified text tiers, 4-band confidence tokens

chore: frontend design polish (accent palette, remove glow/gradient utils), ignore installed skill trees, add opencode skills config

feat(frontend): HUD glass design system + clay components

feat: implement 8 tool bridges (F1-F8) + audit child components

fix: prevent page scroll when zooming phylo tree (non-passive wheel listener)

feat: interactive phylo tree — pan/zoom, hover highlight, collapse/expand, node selection

feat: improve phylo tree viz — branch length labels, bigger nodes, hub labels, tooltips, ML recommendation

feat: dedicated phylo router (NJ/UPGMA/ML), local PhyML binary, standalone phylo page, PhyloTreeViewer redesign

fix: accurate phylogenetic tree visualization — proportional branch lengths, scale bar, bootstrap labels, circular layout mode

feat: add PNG/TSV/JSON/CSV/FASTA export to all 8 tool components

feat: domains, interactions, primers, structure analysis, wizard, phylo tree, conservation