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bio-nexus-api / bioai-platform /backend /app /routers

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History: 42 commits

Samad14

feat: molecular docking (AutoDock Vina) + docs site + Sentry + cache stats + Phase 2 docs update

fb8c550 4 months ago

__init__.py

0 Bytes
Initial commit: Bio Nexus pipeline engine — BLAST + UniProt + AlphaFold + AI interpretation (Phase 1) 5 months ago
ai.py

1.18 kB
design.md + rules.md compliance: dark theme, teal palette, pulsing dot, Pydantic models, api.ts routing, config fixes, db/max_hits threading, Supabase migration 004 4 months ago
alignment.py

3.31 kB
Fix MSA: use correct EBI result type 'fa' instead of 'aln-fasta' — confirmed via live API test 4 months ago
api_keys.py

1.48 kB
feat: complete Phase 2 — API keys, share links, export, pipeline steps, guest upgrade 4 months ago
cache_stats.py

413 Bytes
feat: molecular docking (AutoDock Vina) + docs site + Sentry + cache stats + Phase 2 docs update 4 months ago
docking.py
2.67 kB
feat: molecular docking (AutoDock Vina) + docs site + Sentry + cache stats + Phase 2 docs update 4 months ago
domains.py

2.32 kB
fix: handle null name in InterPro domain response 4 months ago
export.py

2.05 kB
feat: complete Phase 2 — API keys, share links, export, pipeline steps, guest upgrade 4 months ago
interactions.py

1.96 kB
fix: primer error handling, interactions scores, structure comparison API 4 months ago
jobs.py

2.37 kB
feat: domains, interactions, primers, structure analysis, wizard, phylo tree, conservation 4 months ago
pathways.py

7.28 kB
Fix KEGG search: use find/hsa with symbol matching + parse get/PATHWAY section 4 months ago
phylo.py

15.5 kB
fix: use valid EBI email (example.com), remove PhyML build from Docker 4 months ago
pipeline_v2.py
20.6 kB
feat: complete Phase 2 — API keys, share links, export, pipeline steps, guest upgrade 4 months ago
pipelines.py
2.35 kB
Security, crash fixes, demo prep, dead code removal 4 months ago
primers.py

3.4 kB
feat: domains, interactions, primers, structure analysis, wizard, phylo tree, conservation 4 months ago
profile.py

1.33 kB
feat: domains, interactions, primers, structure analysis, wizard, phylo tree, conservation 4 months ago
sequences.py

2.87 kB
Deploy prep: Render config + Dockerfile, refactored backend auth flow, dashboard, landing page, error states, guest flow 4 months ago
share.py

1.28 kB
feat: complete Phase 2 — API keys, share links, export, pipeline steps, guest upgrade 4 months ago
structure_analysis.py
10.7 kB
fix: Foldseek alignments are [dict] lists, parse target format 4 months ago
structures.py

5.19 kB
Fix structure viewer: correct PDB API URL (+/entry/), fix RCSB UniProt search attribute + payload format 4 months ago
uniprot.py
1.89 kB
Sprint 1-2: JWT auth middleware + UniProt dedicated page 4 months ago