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bio-nexus-api / bioai-platform /frontend /src /app /(dashboard) /analyze

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History: 102 commits

Samad14

feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis

4939f56 about 1 month ago

admet
feat(admet): ProTox 3.0 ML toxicity prediction — backend client + endpoint, frontend ProTox tab, restored sidebar chevron about 2 months ago
alignment
feat(seq-tools): share colored MSA viewer across BLAST job, alignment tool, report, shared and phylo surfaces about 2 months ago
blast
Add global/local BLAST modes, full-length pairwise alignment view, standalone pairwise tool 2 months ago
castp
feat: optimize CASTp SASA with KDTree, add sequence input to CASTp + Structure Prep, ESMFold integration for unknown genes about 1 month ago
compare
fix(frontend): clear stale results, prefill-only bridges, and results-ready banners 2 months ago
docking
feat: techspec additions — de novo tier-6 branch, structure export, page capture + final synthesis about 1 month ago
domains
Refine design system: semantic color tokens, tiered motion, denser result cards, VinaLog toolbar 2 months ago
dotplot
feat(results): in-app share dialog + self-normalized dotplot scoring about 2 months ago
function
fix(seq-tools): stop auto-scrolling on job completion, fix structure highlight & AlphaFold viewer loading about 2 months ago
interactions
fix(frontend): clear stale results, prefill-only bridges, and results-ready banners 2 months ago
md
feat(design): bioluminescent green+violet palette and re-tuned landing hero about 2 months ago
motif
feat(seq-tools): wire motif scanner into BLAST, structure, alignment and dot-plot workflows about 2 months ago
ngs
feat: replace igv.js with custom SAM/VCF genome viewer about 2 months ago
pairwise
feat(seq-tools): wire motif scanner into BLAST, structure, alignment and dot-plot workflows about 2 months ago
pathway
fix(pathways): read enrichment results from projection response, add p-value and gene ratio 2 months ago
phylo
feat(theme): dual light/dark mode with Apple light theme, toggle, and theme-aware viewers about 2 months ago
predict-structure
feat: add CASTp pockets, SWISS-MODEL, ESMFold + fix Dockerfiles about 1 month ago
primers
feat(primers): add NCBI gene search + sequence retrieval, oligo QC and in-silico PCR verification with recharts graphs about 2 months ago
sequences
feat(seq-tools): add sequence utilities, motif scanner and dot plot tools with frontend pages about 2 months ago
sequencing
fix(seq-tools): stop auto-scrolling on job completion, fix structure highlight & AlphaFold viewer loading about 2 months ago
structure-prep
feat: optimize CASTp SASA with KDTree, add sequence input to CASTp + Structure Prep, ESMFold integration for unknown genes about 1 month ago
structure
fix(seq-tools): stop auto-scrolling on job completion, fix structure highlight & AlphaFold viewer loading about 2 months ago
swissmodel
feat: add CASTp pockets, SWISS-MODEL, ESMFold + fix Dockerfiles about 1 month ago
tools
refactor(icons): migrate lucide-react to @phosphor-icons/react, remove dep 2 months ago
uniprot
refactor(icons): migrate lucide-react to @phosphor-icons/react, remove dep 2 months ago
page.tsx

8.81 kB
feat: structure preparation pipeline — broken chains → SWISS-MODEL repair → PyMOL cleanup → fpocket + CASTp about 1 month ago