File size: 5,715 Bytes
10795db | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 | """End-to-end smoke tests for the BioPatch API.
Uses an in-memory SQLite shared across connections so the TestClient and the
WebSocket use the same data. The simulator and auto-seeder are disabled here
so we can drive the system deterministically.
"""
from __future__ import annotations
import os
import sys
from pathlib import Path
os.environ["DATABASE_URL"] = "sqlite+pysqlite:///file:biopatch_test?mode=memory&cache=shared&uri=true"
os.environ["ENABLE_SIMULATOR"] = "false"
os.environ["AUTO_SEED"] = "false"
os.environ["JWT_SECRET"] = "test-secret-for-pytest-only-not-for-prod-use"
sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
import pytest
from fastapi.testclient import TestClient
from core.database import init_db # noqa: E402
from main import app # noqa: E402
@pytest.fixture(scope="module")
def client():
init_db()
with TestClient(app) as c:
yield c
def _register_and_login(client: TestClient, role: str = "admin") -> str:
email = f"{role}@biopatch.io"
client.post(
"/api/auth/register",
json={
"email": email,
"full_name": f"Test {role.title()}",
"password": "TestPassword!1",
"role": role,
},
)
resp = client.post(
"/api/auth/login/json",
json={"email": email, "password": "TestPassword!1"},
)
assert resp.status_code == 200, resp.text
return resp.json()["access_token"]
def test_health(client: TestClient) -> None:
r = client.get("/api/health")
assert r.status_code == 200
assert r.json()["status"] == "ok"
def test_auth_required_on_patients(client: TestClient) -> None:
r = client.get("/api/patients")
assert r.status_code == 401
def test_full_patient_flow(client: TestClient) -> None:
token = _register_and_login(client, role="admin")
h = {"Authorization": f"Bearer {token}"}
# Create a patient
r = client.post(
"/api/patients",
json={
"mrn": "MRN-TEST-1",
"full_name": "Test Patient",
"age": 60,
"sex": "M",
"ward": "TestWard",
"bed": "1",
"surgery_type": "Appendectomy",
"surgery_date": "2025-05-10T08:00:00Z",
},
headers=h,
)
assert r.status_code == 201, r.text
patient_id = r.json()["id"]
# Attach a sensor
r = client.post(
f"/api/patients/{patient_id}/sensors",
json={"device_id": "BP-TEST-001", "location": "incision"},
headers=h,
)
assert r.status_code == 201, r.text
sensor_id = r.json()["id"]
# Ingest a vital that triggers critical
r = client.post(
f"/api/patients/{patient_id}/vitals",
json={"temperature_c": 38.6, "ph": 8.1, "humidity": 88.0, "sensor_id": sensor_id},
headers=h,
)
assert r.status_code == 201, r.text
vital = r.json()
assert vital["severity"] == "critical"
assert vital["sepsis_risk"] >= 75
assert vital["bacterial_signature"] is not None
# List shows the latest score
r = client.get("/api/patients", headers=h)
assert r.status_code == 200
items = r.json()
target = next(p for p in items if p["id"] == patient_id)
assert target["latest_severity"] == "critical"
assert target["online_sensor_count"] == 1
# Vitals history
r = client.get(f"/api/patients/{patient_id}/vitals?hours=1", headers=h)
assert r.status_code == 200
assert len(r.json()) == 1
# Clinical note
r = client.post(
f"/api/patients/{patient_id}/notes",
json={"body": "Started broad-spectrum antibiotics.", "category": "intervention", "severity": "warning"},
headers=h,
)
assert r.status_code == 201, r.text
assert r.json()["author_name"] == "Test Admin"
r = client.get(f"/api/patients/{patient_id}/notes", headers=h)
assert r.status_code == 200
assert len(r.json()) == 1
def test_role_enforcement_for_patient_create(client: TestClient) -> None:
token = _register_and_login(client, role="nurse")
h = {"Authorization": f"Bearer {token}"}
r = client.post(
"/api/patients",
json={
"mrn": "MRN-TEST-NURSE",
"full_name": "Should Fail",
"age": 50,
"sex": "F",
"ward": "X",
"bed": "1",
"surgery_type": "X",
"surgery_date": "2025-05-10T08:00:00Z",
},
headers=h,
)
assert r.status_code == 403
def test_websocket_snapshot_and_broadcast(client: TestClient) -> None:
token = _register_and_login(client, role="admin")
# Unauthenticated handshake closes immediately
with client.websocket_connect("/ws/stream") as ws:
msg = ws.receive_json()
assert msg["type"] == "error"
with client.websocket_connect(f"/ws/stream?token={token}") as ws:
snap = ws.receive_json()
assert snap["type"] == "snapshot"
assert "patients" in snap["data"]
# Drive a new reading -> the WS must broadcast it
h = {"Authorization": f"Bearer {token}"}
patients = client.get("/api/patients", headers=h).json()
assert patients, "expected at least one patient from previous test"
pid = patients[0]["id"]
r = client.post(
f"/api/patients/{pid}/vitals",
json={"temperature_c": 34.0, "ph": 6.0, "humidity": 75.0},
headers=h,
)
assert r.status_code == 201
seen_types: set[str] = set()
for _ in range(5):
event = ws.receive_json()
seen_types.add(event["type"])
if "vitals" in seen_types:
break
assert "vitals" in seen_types
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