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Refactor: Improve code quality, security, and configuration
Nikhil Pravin Pise- Remove redundant sys.path manipulation in agents and services - Enhance CORS configuration with environment-based origin handling - Improve error handling (no internal detail leakage) - Fix environment variable handling in setup scripts (remove extra quotes) - Update gitignore for external tools and course materials - Correct clinical biomarker reference ranges - Add comprehensive production upgrade plan - Improve test configuration (HuggingFace deprecation filters) - Add optional dependencies for evaluation tools - Consolidate path initialization patternsad2e847
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refactor: major repository cleanup and bug fixes
Nikhil Pravin PiseCleanup & Organization: - Removed clutter: deleted archive/ and setup.py - Reorganized scripts: moved PowerShell startup scripts to scripts/ - Created examples/ folder with HTML/JS integration examples - Consolidated docs: archived 13 old implementation notes to docs/archive/ - Rewrote root README.md for clarity and professional appearance Core Bug Fixes: - Fixed Google Gemini embedding API 404 error by switching to HuggingFace local embeddings - Upgraded torch/torchvision to resolve PyTorch compatibility issues - Fixed HuggingFaceEmbeddings import and configuration in pdf_processor.py - Successfully rebuilt FAISS vector store with compatible embeddings (2,609 chunks) Documentation: - Created docs/ARCHITECTURE.md: system design, components, data flow - Created docs/API.md: complete REST API reference with examples - Created docs/DEVELOPMENT.md: extension guide for developers - Created scripts/README.md: utility scripts reference - Created examples/README.md: integration patterns for …6dc9d46