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Refactor: Improve code quality, security, and configuration
Nikhil Pravin Pise- Remove redundant sys.path manipulation in agents and services - Enhance CORS configuration with environment-based origin handling - Improve error handling (no internal detail leakage) - Fix environment variable handling in setup scripts (remove extra quotes) - Update gitignore for external tools and course materials - Correct clinical biomarker reference ranges - Add comprehensive production upgrade plan - Improve test configuration (HuggingFace deprecation filters) - Add optional dependencies for evaluation tools - Consolidate path initialization patternsad2e847 -
docs: update all documentation to reflect current codebase state
Nikhil Pravin Pise- Update README.md: correct test count (83 -> 30), fix test commands - Rewrite START_HERE.md as proper onboarding guide - Update QUICKSTART.md and CONTRIBUTING.md test commands - Update api/ docs: Groq/Gemini as default providers (not Ollama) - Update api/ARCHITECTURE.md: multi-provider LLM diagram - Update api/GETTING_STARTED.md: Groq/Gemini prerequisites - Update api/QUICK_REFERENCE.md: fix troubleshooting, commands - Update docs/DEVELOPMENT.md: fix code examples, test commands - Update docs/DEEP_REVIEW.md: add RESOLVED/OPEN status to all findings - Update scripts/README.md: use .venv python paths - Archive stale root-level docs to docs/archive/ - All 30 tests passingaefac4f