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Try to make the right things writable to fix errors
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FROM rocker/shiny-verse:latest
# Install system dependencies including Python
RUN apt-get update && apt-get install -y \
python3-full \
python3-pip \
python3-venv \
&& rm -rf /var/lib/apt/lists/*
WORKDIR /code
# Install R packages
RUN install2.r --error \
ggExtra \
httr \
jsonlite \
commonmark \
glue \
reticulate
# Create and activate virtual environment
ENV VIRTUAL_ENV=/opt/venv
RUN python3 -m venv $VIRTUAL_ENV
ENV PATH="$VIRTUAL_ENV/bin:$PATH"
# Install Python packages in the virtual environment
RUN pip install --no-cache-dir \
torch \
sentence-transformers \
pandas \
numpy
# Create directories for model cache and make them writable
RUN mkdir -p /.cache/torch/sentence_transformers \
&& chmod -R 777 /.cache
# Create additional writable directories that sentence-transformers might need
RUN mkdir -p /.cache/huggingface \
&& chmod -R 777 /.cache/huggingface
# Copy your application files
COPY . .
# Make the application directory writable for runtime installations
RUN chmod -R 777 /code
# Enable installation of R packages
RUN chmod -R 777 /usr/local/lib/R/site-library
# Configure R to use the virtual environment's Python
RUN echo "RETICULATE_PYTHON='$VIRTUAL_ENV/bin/python'" >> /usr/local/lib/R/etc/Renviron
CMD ["R", "--quiet", "-e", "shiny::runApp(host='0.0.0.0', port=7860)"]