Sync GitHub main af692537c27175c8410bf57a747be0caf23718e2 (part 3)

research/experiments/EXP-GEN-0048/manifest.json

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+{
+  "experiment_id": "EXP-GEN-0048",
+  "experiment_status": "failed",
+  "ai_exposure": "none",
+  "ai_reproducibility": "R0",
+  "ai_protocol": {
+    "version": 1,
+    "bump_reason": "initial registration"
+  },
+  "causal_taint": "PURE",
+  "ai_interactions": [],
+  "causal_card": {
+    "classification": "PURE",
+    "interaction_ids": [],
+    "roles": []
+  },
+  "timestamp": "2026-09-29T17:37:43.165013",
+  "created_at": "2026-09-29T15:37:43.165020+00:00",
+  "git": {
+    "commit": "a679deb6d5c631294423eea8a208e9ca2b597584",
+    "dirty": true,
+    "branch": "develop"
+  },
+  "software": {
+    "python": "3.13.14",
+    "os": "Windows 11",
+    "brain5d_version": "0.6.0a7"
+  },
+  "simulation": {
+    "ticks": 100,
+    "seed": 42,
+    "seeds": [
+      42
+    ],
+    "protocol": "runtime_ticks_v1"
+  },
+  "artifacts": {
+    "workflow": "experiments/EXP-GEN-0048/workflow.json"
+  },
+  "research_questions": [
+    "RQ-CUDA-DET-001"
+  ],
+  "hypotheses": [
+    "H-CUDA-DET-001-A"
+  ],
+  "config": {},
+  "validity": {
+    "valid": false,
+    "reason": "1 runtime error(s), 1 fatal",
+    "runtime_error_count": 1,
+    "fatal_error_count": 1
+  },
+  "runtime_errors": [
+    {
+      "tick": 99,
+      "phase": "tick_contract",
+      "exception_type": "TickContractViolation",
+      "message": "Requested 100, observed 99 ticks.",
+      "fatal": true,
+      "traceback_hash": ""
+    }
+  ],
+  "research_run_mode": "EXPLORATORY",
+  "data_partitions": [],
+  "network_mode": "OFFLINE",
+  "runtime": {
+    "duration_seconds": 7.373613000032492
+  }
+}

research/experiments/EXP-GEN-0048/workflow.json

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+{
+  "title": "Controlled runtime run",
+  "research_question": "RQ-CUDA-DET-001",
+  "hypothesis": "H-CUDA-DET-001-A",
+  "conditions": "Explicitly document seed, configuration, replicates and stopping criteria.",
+  "ticks": 100,
+  "protocol": "runtime_ticks_v1",
+  "seeds": [
+    42
+  ],
+  "notes": "",
+  "execution": "controller.step",
+  "assistant_policy": "No AI-generated input is executed or used as evidence.",
+  "epistemic_layers": {
+    "ui_state": "operator/dashboard progress only; not a scientific result",
+    "data": "DATA artifacts and deterministic statistics are authoritative run outputs",
+    "evid": "not_created; requires semantic validation, clean freeze and human review",
+    "interpretation": "post-hoc AI or human interpretation; never execution input"
+  }
+}