BREAKING CHANGE: Remove GENERAL and DRUG_REPURPOSING domains
DeepBoner is now a focused Sexual Health Research Specialist, not a
general-purpose research agent.
Changes:
- Remove ResearchDomain.GENERAL and ResearchDomain.DRUG_REPURPOSING
- Remove GENERAL_CONFIG and DRUG_REPURPOSING_CONFIG from domain.py
- Set DEFAULT_DOMAIN = ResearchDomain.SEXUAL_HEALTH
- Update Gradio examples (remove Metformin/Alzheimer's)
- New example: "Testosterone therapy for hypoactive sexual desire disorder?"
- Hide domain dropdown (only one option now)
- Update all domain-related tests
Closes #89
* feat: implement SPEC_10 domain-agnostic refactor
* fix: complete SPEC_10 audit - license + HierarchicalOrchestrator domain
License Fixes:
- LICENSE: Fix copyright "Antibody Training Pipeline ESM" → "DeepBoner Contributors"
- pyproject.toml: Add missing license = "Apache-2.0" field
- README.md: Fix frontmatter license: mit → apache-2.0
Domain Threading Fixes:
- hierarchical.py: Add domain param to __init__ and pass to ResearchTeam
- factory.py: Pass domain to HierarchicalOrchestrator
All 237 tests pass. Domain now properly threaded through all orchestrators.
* test: enhance domain handling in orchestrators and judges
- Updated unit tests for `configure_orchestrator` to include mock mode and free tier scenarios, ensuring the domain is correctly passed to handlers.
- Refactored tests for `JudgeHandler` to mock model retrieval, allowing for domain acceptance without API key requirements.
- Improved `AdvancedOrchestrator` tests to mock API key validation and ensure domain handling i…
