Create app.py
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app.py
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| 1 |
+
import gradio as gr
|
| 2 |
+
import joblib
|
| 3 |
+
import pandas as pd
|
| 4 |
+
import os
|
| 5 |
+
from groq import Groq
|
| 6 |
+
|
| 7 |
+
from reportlab.platypus import (
|
| 8 |
+
SimpleDocTemplate, Paragraph, Spacer,
|
| 9 |
+
Table, TableStyle
|
| 10 |
+
)
|
| 11 |
+
from reportlab.lib.styles import ParagraphStyle, getSampleStyleSheet
|
| 12 |
+
from reportlab.lib import colors
|
| 13 |
+
from reportlab.lib.units import inch
|
| 14 |
+
|
| 15 |
+
# ===============================
|
| 16 |
+
# LOAD MODEL
|
| 17 |
+
# ===============================
|
| 18 |
+
model = joblib.load("typhoidguard_model_reduced.pkl")
|
| 19 |
+
client = Groq(api_key=os.environ.get("GROQ_API_KEY"))
|
| 20 |
+
|
| 21 |
+
last_llm_report = ""
|
| 22 |
+
last_basic_data = {}
|
| 23 |
+
|
| 24 |
+
# ===============================
|
| 25 |
+
# LLM FUNCTION
|
| 26 |
+
# ===============================
|
| 27 |
+
def generate_llm_report(patient_info, prob_pct, risk_label, recommendation, factors):
|
| 28 |
+
|
| 29 |
+
prompt = f"""
|
| 30 |
+
You are a responsible medical AI assistant helping rural healthcare units in Pakistan.
|
| 31 |
+
|
| 32 |
+
Patient Details:
|
| 33 |
+
{patient_info}
|
| 34 |
+
|
| 35 |
+
Predicted Risk: {prob_pct}%
|
| 36 |
+
Risk Category: {risk_label}
|
| 37 |
+
|
| 38 |
+
Clinical Risk Factors:
|
| 39 |
+
{", ".join(factors) if factors else "None"}
|
| 40 |
+
|
| 41 |
+
Agent Recommendation:
|
| 42 |
+
{recommendation}
|
| 43 |
+
|
| 44 |
+
Generate structured sections:
|
| 45 |
+
Clinical Interpretation
|
| 46 |
+
Possible Complications
|
| 47 |
+
Immediate Precautions
|
| 48 |
+
Preventative Measures
|
| 49 |
+
Follow-up Recommendations
|
| 50 |
+
|
| 51 |
+
Keep headings clear.
|
| 52 |
+
End with reminder to consult qualified doctor.
|
| 53 |
+
"""
|
| 54 |
+
|
| 55 |
+
response = client.chat.completions.create(
|
| 56 |
+
model="llama-3.3-70b-versatile",
|
| 57 |
+
messages=[{"role": "user", "content": prompt}],
|
| 58 |
+
temperature=0.4,
|
| 59 |
+
)
|
| 60 |
+
|
| 61 |
+
return response.choices[0].message.content
|
| 62 |
+
|
| 63 |
+
|
| 64 |
+
# ===============================
|
| 65 |
+
# BASIC PREDICTION
|
| 66 |
+
# ===============================
|
| 67 |
+
def predict_basic(name, age, gender, platelets, hb, duration,
|
| 68 |
+
blood_bacteria, severity, medication):
|
| 69 |
+
|
| 70 |
+
global last_basic_data, last_llm_report
|
| 71 |
+
last_llm_report = ""
|
| 72 |
+
|
| 73 |
+
data = pd.DataFrame([{
|
| 74 |
+
"Age": age,
|
| 75 |
+
"Platelet Count": platelets,
|
| 76 |
+
"Hemoglobin (g/dL)": hb,
|
| 77 |
+
"Treatment Duration": duration,
|
| 78 |
+
"Gender": gender,
|
| 79 |
+
"Blood Culture Bacteria": blood_bacteria,
|
| 80 |
+
"Symptoms Severity": severity,
|
| 81 |
+
"Current Medication": medication
|
| 82 |
+
}])
|
| 83 |
+
|
| 84 |
+
prob = model.predict_proba(data)[0][1]
|
| 85 |
+
prob_pct = round(prob * 100, 2)
|
| 86 |
+
|
| 87 |
+
low_platelets = platelets < 150000
|
| 88 |
+
low_hb = hb < 10
|
| 89 |
+
|
| 90 |
+
if low_platelets or low_hb:
|
| 91 |
+
prob_pct = 90.0
|
| 92 |
+
risk_label = "HIGH RISK"
|
| 93 |
+
color = "#b00020"
|
| 94 |
+
recommendation = "Immediate referral to secondary care facility recommended."
|
| 95 |
+
elif prob >= 0.65:
|
| 96 |
+
risk_label = "HIGH RISK"
|
| 97 |
+
color = "#b00020"
|
| 98 |
+
recommendation = "Urgent clinical evaluation required."
|
| 99 |
+
elif prob >= 0.35:
|
| 100 |
+
risk_label = "MODERATE RISK"
|
| 101 |
+
color = "#f57c00"
|
| 102 |
+
recommendation = "Close monitoring advised."
|
| 103 |
+
else:
|
| 104 |
+
risk_label = "LOW RISK"
|
| 105 |
+
color = "#2e7d32"
|
| 106 |
+
recommendation = "Continue standard treatment protocol."
|
| 107 |
+
|
| 108 |
+
factors = []
|
| 109 |
+
if low_platelets:
|
| 110 |
+
factors.append("Low Platelet Count")
|
| 111 |
+
if low_hb:
|
| 112 |
+
factors.append("Low Hemoglobin")
|
| 113 |
+
|
| 114 |
+
last_basic_data = {
|
| 115 |
+
"name": name,
|
| 116 |
+
"age": age,
|
| 117 |
+
"gender": gender,
|
| 118 |
+
"platelets": platelets,
|
| 119 |
+
"hb": hb,
|
| 120 |
+
"duration": duration,
|
| 121 |
+
"bacteria": blood_bacteria,
|
| 122 |
+
"severity": severity,
|
| 123 |
+
"medication": medication,
|
| 124 |
+
"prob_pct": prob_pct,
|
| 125 |
+
"risk_label": risk_label,
|
| 126 |
+
"recommendation": recommendation,
|
| 127 |
+
"factors": factors
|
| 128 |
+
}
|
| 129 |
+
|
| 130 |
+
urdu = f"""
|
| 131 |
+
<div style='background:#eef3fb;padding:10px;border-radius:8px;'>
|
| 132 |
+
<b>اردو خلاصہ:</b><br>
|
| 133 |
+
علاج ناکامی کا خطرہ <b>{prob_pct}%</b> ہے۔ درجہ: <b>{risk_label}</b>۔<br>
|
| 134 |
+
ڈاکٹر سے مشورہ ضرور کریں۔
|
| 135 |
+
</div>
|
| 136 |
+
"""
|
| 137 |
+
|
| 138 |
+
return f"""
|
| 139 |
+
<div style="font-family:Arial;padding:15px;">
|
| 140 |
+
<h2 style="color:{color};">Patient: {name}</h2>
|
| 141 |
+
<h3>Risk of Treatment Failure: {prob_pct}%</h3>
|
| 142 |
+
<h3>Status: {risk_label}</h3>
|
| 143 |
+
|
| 144 |
+
<h4>Clinical Risk Factors:</h4>
|
| 145 |
+
<ul>
|
| 146 |
+
{''.join([f"<li>{f}</li>" for f in factors]) if factors else "<li>None</li>"}
|
| 147 |
+
</ul>
|
| 148 |
+
|
| 149 |
+
<h4>Agent Recommendation:</h4>
|
| 150 |
+
<p><b>{recommendation}</b></p>
|
| 151 |
+
|
| 152 |
+
{urdu}
|
| 153 |
+
</div>
|
| 154 |
+
"""
|
| 155 |
+
|
| 156 |
+
|
| 157 |
+
# ===============================
|
| 158 |
+
# DETAILED BUTTON
|
| 159 |
+
# ===============================
|
| 160 |
+
def generate_detailed(*inputs):
|
| 161 |
+
global last_basic_data, last_llm_report
|
| 162 |
+
|
| 163 |
+
basic_html = predict_basic(*inputs)
|
| 164 |
+
|
| 165 |
+
d = last_basic_data
|
| 166 |
+
|
| 167 |
+
patient_info = f"""
|
| 168 |
+
Age: {d['age']}
|
| 169 |
+
Gender: {d['gender']}
|
| 170 |
+
Platelets: {d['platelets']}
|
| 171 |
+
Hemoglobin: {d['hb']}
|
| 172 |
+
Duration: {d['duration']}
|
| 173 |
+
Bacteria: {d['bacteria']}
|
| 174 |
+
Severity: {d['severity']}
|
| 175 |
+
Medication: {d['medication']}
|
| 176 |
+
"""
|
| 177 |
+
|
| 178 |
+
last_llm_report = generate_llm_report(
|
| 179 |
+
patient_info,
|
| 180 |
+
d["prob_pct"],
|
| 181 |
+
d["risk_label"],
|
| 182 |
+
d["recommendation"],
|
| 183 |
+
d["factors"]
|
| 184 |
+
)
|
| 185 |
+
|
| 186 |
+
formatted = last_llm_report.replace("\n", "<br>")
|
| 187 |
+
|
| 188 |
+
return basic_html + f"""
|
| 189 |
+
<hr>
|
| 190 |
+
<h3 style="color:#003366;">Detailed AI Report & Recommendations</h3>
|
| 191 |
+
<div style="background:#f9f9f9;padding:15px;border-radius:8px;">
|
| 192 |
+
{formatted}
|
| 193 |
+
</div>
|
| 194 |
+
"""
|
| 195 |
+
|
| 196 |
+
|
| 197 |
+
# ===============================
|
| 198 |
+
# PDF GENERATION (PROFESSIONAL)
|
| 199 |
+
# ===============================
|
| 200 |
+
def generate_pdf(*inputs):
|
| 201 |
+
|
| 202 |
+
global last_basic_data, last_llm_report
|
| 203 |
+
|
| 204 |
+
d = last_basic_data
|
| 205 |
+
file_path = f"{d['name']}_Typhoid_Report.pdf"
|
| 206 |
+
doc = SimpleDocTemplate(file_path)
|
| 207 |
+
elements = []
|
| 208 |
+
styles = getSampleStyleSheet()
|
| 209 |
+
|
| 210 |
+
# Title
|
| 211 |
+
elements.append(Paragraph("<b>TyphoidGuard AI Clinical Report</b>", styles["Title"]))
|
| 212 |
+
elements.append(Spacer(1, 0.3 * inch))
|
| 213 |
+
|
| 214 |
+
# ---- TABLE ----
|
| 215 |
+
table_data = [
|
| 216 |
+
["Patient Name", d["name"]],
|
| 217 |
+
["Age", d["age"]],
|
| 218 |
+
["Gender", d["gender"]],
|
| 219 |
+
["Platelet Count", d["platelets"]],
|
| 220 |
+
["Hemoglobin", d["hb"]],
|
| 221 |
+
["Treatment Duration", d["duration"]],
|
| 222 |
+
["Bacteria", d["bacteria"]],
|
| 223 |
+
["Severity", d["severity"]],
|
| 224 |
+
["Medication", d["medication"]],
|
| 225 |
+
["Predicted Risk %", d["prob_pct"]],
|
| 226 |
+
["Risk Level", d["risk_label"]],
|
| 227 |
+
]
|
| 228 |
+
|
| 229 |
+
table = Table(table_data, colWidths=[2.5*inch, 3*inch])
|
| 230 |
+
table.setStyle(TableStyle([
|
| 231 |
+
('BACKGROUND',(0,0),(-1,0),colors.lightgrey),
|
| 232 |
+
('GRID',(0,0),(-1,-1),1,colors.grey),
|
| 233 |
+
('FONTNAME',(0,0),(-1,-1),'Helvetica')
|
| 234 |
+
]))
|
| 235 |
+
|
| 236 |
+
elements.append(table)
|
| 237 |
+
elements.append(Spacer(1,0.4*inch))
|
| 238 |
+
|
| 239 |
+
# ---- BASIC RECOMMENDATION ----
|
| 240 |
+
elements.append(Paragraph("<b>Agent Recommendation</b>", styles["Heading2"]))
|
| 241 |
+
elements.append(Spacer(1,0.2*inch))
|
| 242 |
+
elements.append(Paragraph(d["recommendation"], styles["Normal"]))
|
| 243 |
+
elements.append(Spacer(1,0.4*inch))
|
| 244 |
+
|
| 245 |
+
# ---- LLM SECTION ----
|
| 246 |
+
if last_llm_report:
|
| 247 |
+
elements.append(Paragraph("<b>Detailed AI Report & Recommendations</b>", styles["Heading2"]))
|
| 248 |
+
elements.append(Spacer(1,0.2*inch))
|
| 249 |
+
elements.append(Paragraph(last_llm_report.replace("\n","<br/>"), styles["Normal"]))
|
| 250 |
+
elements.append(Spacer(1,0.4*inch))
|
| 251 |
+
|
| 252 |
+
# Disclaimer
|
| 253 |
+
elements.append(Paragraph(
|
| 254 |
+
"<i>This report is AI-generated. Final medical decisions must be made by a qualified doctor.</i>",
|
| 255 |
+
styles["Normal"]
|
| 256 |
+
))
|
| 257 |
+
|
| 258 |
+
# Team Footer
|
| 259 |
+
elements.append(Spacer(1,0.5*inch))
|
| 260 |
+
elements.append(Paragraph("<b>Team Chinar AI (AJK)</b>", styles["Normal"]))
|
| 261 |
+
elements.append(Paragraph(
|
| 262 |
+
"Anees Qumar Abbasi | Sharafat Hussain | Salma Asghar | "
|
| 263 |
+
"Kaleem Hussain | Munazza Zahra | Kokub Khurishid",
|
| 264 |
+
styles["Normal"]
|
| 265 |
+
))
|
| 266 |
+
|
| 267 |
+
doc.build(elements)
|
| 268 |
+
return file_path
|
| 269 |
+
|
| 270 |
+
|
| 271 |
+
# ===============================
|
| 272 |
+
# INTERFACE
|
| 273 |
+
# ===============================
|
| 274 |
+
with gr.Blocks(theme=gr.themes.Soft()) as demo:
|
| 275 |
+
|
| 276 |
+
gr.Markdown("""
|
| 277 |
+
# 🏥 TyphoidGuard AI
|
| 278 |
+
### HEC Generative AI Hackathon – Pakistan
|
| 279 |
+
#### Team Chinar AI (AJK)
|
| 280 |
+
""")
|
| 281 |
+
|
| 282 |
+
with gr.Row():
|
| 283 |
+
name = gr.Textbox(label="Patient Name")
|
| 284 |
+
age = gr.Number(label="Age")
|
| 285 |
+
gender = gr.Radio(["Male", "Female"], label="Gender")
|
| 286 |
+
|
| 287 |
+
with gr.Row():
|
| 288 |
+
platelets = gr.Number(label="Platelet Count")
|
| 289 |
+
hb = gr.Number(label="Hemoglobin (g/dL)")
|
| 290 |
+
duration = gr.Number(label="Treatment Duration (Days)")
|
| 291 |
+
|
| 292 |
+
with gr.Row():
|
| 293 |
+
blood_bacteria = gr.Dropdown(
|
| 294 |
+
["Escherichia coli","Salmonella typhi","Unknown","Staphylococcus"],
|
| 295 |
+
label="Blood Culture Bacteria"
|
| 296 |
+
)
|
| 297 |
+
severity = gr.Dropdown(
|
| 298 |
+
["Low","Moderate","High","Unknown"],
|
| 299 |
+
label="Symptoms Severity"
|
| 300 |
+
)
|
| 301 |
+
medication = gr.Dropdown(
|
| 302 |
+
["Amoxicillin","Ceftriaxone","Azithromycin"],
|
| 303 |
+
label="Current Medication"
|
| 304 |
+
)
|
| 305 |
+
|
| 306 |
+
# ---- BUTTONS ABOVE OUTPUT ----
|
| 307 |
+
with gr.Row():
|
| 308 |
+
predict_btn = gr.Button("Basic Risk Assessment", variant="primary")
|
| 309 |
+
detailed_btn = gr.Button("Detailed Report & Recommendations", variant="secondary")
|
| 310 |
+
pdf_btn = gr.Button("Generate PDF Report")
|
| 311 |
+
|
| 312 |
+
output = gr.HTML()
|
| 313 |
+
|
| 314 |
+
predict_btn.click(predict_basic,
|
| 315 |
+
inputs=[name,age,gender,platelets,hb,duration,
|
| 316 |
+
blood_bacteria,severity,medication],
|
| 317 |
+
outputs=output)
|
| 318 |
+
|
| 319 |
+
detailed_btn.click(generate_detailed,
|
| 320 |
+
inputs=[name,age,gender,platelets,hb,duration,
|
| 321 |
+
blood_bacteria,severity,medication],
|
| 322 |
+
outputs=output)
|
| 323 |
+
|
| 324 |
+
pdf_btn.click(generate_pdf,
|
| 325 |
+
inputs=[name,age,gender,platelets,hb,duration,
|
| 326 |
+
blood_bacteria,severity,medication],
|
| 327 |
+
outputs=gr.File())
|
| 328 |
+
|
| 329 |
+
demo.launch()
|