Merge pull request #15 from r0m4k/docs/field-notes-and-traces
Dimitris
Unverified signature
db77748
Field Notes article, model card, charts, and traces publisher
docs: Field Notes article, model card, charts; add traces publisher
Codex
6a8cb57
Adds the Field Notes write-up + two model-improvement charts + the model card, and the build_traces/traces entrypoint that publishes the agent-traces dataset (Sharing badge). Additive.
Add field guide and few-shot examples to extraction prompt.
Codex+1: Codex
11adb6c
Clarify how markers, values, units, and flags should be formatted so the vision model produces consistent structured lab rows.
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Default extraction to the fine-tuned MiniCPM-V Hub checkpoint.
Codex+1: Codex
c1a5fb4
Point DEFAULT_HF_REPO at build-small-hackathon/blood-test-minicpmv-4_6-medreason so local runs and the Space use our MedReason SFT model without extra env vars.
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Add handoff docs, commit author rules, and fix Field Notes badge.
Codex+1: Codex
3072bfd
Publish remaining-work checklist and message for Dimitris. Document that all agent commits must be authored by Codex.
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Remove dead chat code and obsolete planning docs.
Drop unwired results chat, hosted API extractor, experimental medreason script, and stale markdown. Trim interpretation rendering to patterns_html only and make model path tests cache-independent.
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Expand lab knowledge graph to 107 markers with curated YouTube videos.
Codex
797f2cf
Add marker video catalog and expansion script so all canonical markers resolve in the graph; improve trace panel interactions and llama.cpp vision extraction paths; update deployment docs and tests.
Lock trace steps until extraction completes and simplify step headers.
Steps stay title-only and non-interactive during upload/processing, then become expandable after analysis. Remove status badges from headers and fix trace body padding.
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Polish trace steps and add marker video embeds to reports.
Simplify collapsed step headers, expand steps on hover, embed related
YouTube videos in marker cards, and extend the CBC knowledge graph with
video_url metadata. Codex collaborated on the trace UX and report UI.
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Make agent pipeline steps easier to understand in plain language.
Lead each trace step with a short explanation and run summary, and move
status metrics, prompts, and previews into collapsible technical sections.
Codex collaborated on the trace UX copy and layout.
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Fix HF Space title corners and step row wrapper styling.
Codex
c03a054
Restore rounded title banner edges and remove the shared background block around the numbered workflow steps on Gradio Space.
Align hero title columns and polish badge expand layout.
Codex
8d7de16
Bottom-align the title copy, hackathon badges, and attribution cards; move report-panel styles into CUSTOM_CSS; let expanded badge details wrap under logos and emojis.
Polish section 3 trace panel and Space startup reliability.
Show pending pipeline steps before analysis starts, simplify the trace
header copy, suppress Gradio asyncio log noise, and extend ZeroGPU time
for first model download plus inference. Codex collaborated on these UI
and deployment updates.
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Add agent trace panel, vision extraction, and local Transformers backend.
Replace chat preview with a scrollable pipeline trace, restore PDF/image
vision intake, default to local Transformers extraction, expand the marker
knowledge base, and track hackathon logo assets for deployment. Codex
collaborated on the trace UI, vision pipeline, and deployment workflow.
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Co-authored-by: Codex <chatgpt-codex-connector[bot]@users.noreply.github.com>
Merge pull request #14 from r0m4k/feat/cross-marker-patterns-ui
Dimitris
552fac8
Cross-marker patterns in the report UI
feat: surface cross-marker patterns in the report UI
Codex
5645fc6
Adds patterns_html() (anemia picture, liver cluster, lipid risk, kidney, thyroid, glycemic) and appends it below the per-marker knowledge-graph report, adding cross-marker reasoning without duplicating the existing per-marker insights. Renders nothing when no pattern applies.
