DrugOps / config /batch10_rows.json
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[
{
"drug_id": 271,
"symptom_group": "METABOLIC",
"group_slot": 89,
"index_key": "LIOTHYRONINE_THRB_PROXY",
"canonical_name": "Liothyronine",
"smiles": "C1=C(C(=C(C(=C1I)O)I)I)CC(C(=O)O)N",
"target_label": "THRB",
"family": "nuclear_receptor",
"pdb_id": "1NAV",
"het_id": "T3",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_thyroid_hormone_ligand:T3",
"tier": "2",
"notes": "Thyroid hormone receptor via T3 (1NAV/T3)",
"batch": "10"
},
{
"drug_id": 272,
"symptom_group": "METABOLIC",
"group_slot": 90,
"index_key": "CIMETIDINE_HRH2_PROXY",
"canonical_name": "Cimetidine",
"smiles": "CN/C(=N\\C#N)NCCC1=CSC=N1",
"target_label": "HRH2",
"family": "gpcr",
"pdb_id": "3RSG",
"het_id": "FAM",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_h2_ligand:FAM",
"tier": "2",
"notes": "H2 receptor via famotidine site (3RSG/FAM)",
"batch": "10"
},
{
"drug_id": 273,
"symptom_group": "METABOLIC",
"group_slot": 91,
"index_key": "ACETOHEXAMIDE_KATP_PROXY",
"canonical_name": "Acetohexamide",
"smiles": "CC1=CC=C(C=C1)S(=O)(=O)NC(=O)NC2CCCCC2",
"target_label": "KATP",
"family": "ion_channel",
"pdb_id": "3SYQ",
"het_id": "GBL",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_sulfonylurea_ligand:GBL",
"tier": "2",
"notes": "KATP via glibenclamide (3SYQ/GBL)",
"batch": "10"
},
{
"drug_id": 274,
"symptom_group": "METABOLIC",
"group_slot": 92,
"index_key": "PHENFORMIN_AMPK_PROXY",
"canonical_name": "Phenformin",
"smiles": "C1=CC=C(C=C1)CC(=O)NC(=N)N",
"target_label": "AMPK",
"family": "kinase",
"pdb_id": "4CFE",
"het_id": "992",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_biguanide_ligand:992",
"tier": "2",
"notes": "AMPK/biguanide pocket via metformin surrogate (4CFE/992)",
"batch": "10"
},
{
"drug_id": 275,
"symptom_group": "METABOLIC",
"group_slot": 93,
"index_key": "GLUCAGON_GCGR",
"canonical_name": "Glucagon",
"smiles": "NCCCCC(N)C(=O)O",
"target_label": "GCGR",
"family": "gpcr",
"pdb_id": "4L6R",
"het_id": "GLU",
"state": "bound",
"anchor_mode": "direct",
"pocket_rule": "cocrystal_ligand:GLU",
"tier": "1",
"notes": "Glucagon receptor cryo-EM (4L6R/GLU); peptide placeholder SMILES",
"batch": "10"
},
{
"drug_id": 276,
"symptom_group": "METABOLIC",
"group_slot": 94,
"index_key": "INSULIN_GLARGINE_INSR_PROXY",
"canonical_name": "Insulin glargine",
"smiles": "NCCCCC(N)C(=O)O",
"target_label": "INSR",
"family": "kinase",
"pdb_id": "4OGA",
"het_id": "INS",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_insulin_ligand:INS",
"tier": "2",
"notes": "Insulin receptor template (4OGA/INS); peptide placeholder",
"batch": "10"
},
{
"drug_id": 277,
"symptom_group": "METABOLIC",
"group_slot": 95,
"index_key": "PHENPROCOUMON_VKOR_PROXY",
"canonical_name": "Phenprocoumon",
"smiles": "CC1=CC(=CC(=C1)C2=C(C(=O)OC2)C3=CC=CC=C3)C(=O)O",
"target_label": "VKOR",
"family": "oxidoreductase",
"pdb_id": "6WV3",
"het_id": "SWF",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_coumarin_ligand:SWF",
"tier": "2",
"notes": "VKOR via warfarin site (6WV3/SWF)",
"batch": "10"
},
{
"drug_id": 278,
"symptom_group": "METABOLIC",
"group_slot": 96,
"index_key": "ETHINYL_ESTRADIOL_ESR1",
"canonical_name": "Ethinyl estradiol",
"smiles": "C[C@]12CC[C@H]3[C@H]([C@@H]1CC[C@@H]2O)CCC4=C3C=CC(=C4)O",
"target_label": "ESR1",
"family": "nuclear_receptor",
"pdb_id": "3ERT",
"het_id": "4HT",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_estrogen_ligand:4HT",
"tier": "2",
"notes": "Estrogen receptor via 4-hydroxytamoxifen site (3ERT/4HT)",
"batch": "10"
},
{
"drug_id": 279,
"symptom_group": "METABOLIC",
"group_slot": 97,
"index_key": "MEDROXYPROGESTERONE_PGR",
"canonical_name": "Medroxyprogesterone",
"smiles": "CC(=O)C1CCC2C1(CCC3C2CCC4=CC(=O)CCC34C)C",
"target_label": "PGR",
"family": "nuclear_receptor",
"pdb_id": "1A28",
"het_id": "PRG",
"state": "bound",
"anchor_mode": "direct",
"pocket_rule": "cocrystal_ligand:PRG",
"tier": "1",
"notes": "Progesterone receptor-progesterone (1A28/PRG)",
"batch": "10"
},
{
"drug_id": 280,
"symptom_group": "METABOLIC",
"group_slot": 98,
"index_key": "NORETHINDRONE_PGR_PROXY",
"canonical_name": "Norethindrone",
"smiles": "C[C@]12CC[C@H]3[C@H]([C@@H]1CC[C@@]2(C#C)O)CCC4=CC(=O)CCC34C",
"target_label": "PGR",
"family": "nuclear_receptor",
"pdb_id": "1A28",
"het_id": "PRG",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_progestin_ligand:PRG",
"tier": "2",
"notes": "Progesterone receptor template (1A28/PRG)",
"batch": "10"
},
{
"drug_id": 281,
"symptom_group": "METABOLIC",
"group_slot": 99,
"index_key": "DANAZOL_AR",
"canonical_name": "Danazol",
"smiles": "C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1CC[C@@]2(O)C#C)C",
"target_label": "AR",
"family": "nuclear_receptor",
"pdb_id": "3R5W",
"het_id": "ENZ",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_androgen_ligand:ENZ",
"tier": "2",
"notes": "Androgen receptor via enzalutamide (3R5W/ENZ)",
"batch": "10"
},
{
"drug_id": 282,
"symptom_group": "METABOLIC",
"group_slot": 100,
"index_key": "FLUDROCORTISONE_NR3C2_PROXY",
"canonical_name": "Fludrocortisone",
"smiles": "C[C@]12CC[C@H]3[C@H]([C@@H]1CC[C@]2(C(=O)CO)O)CCC4=CC(=O)CC[C@]34C",
"target_label": "NR3C2",
"family": "nuclear_receptor",
"pdb_id": "2AA2",
"het_id": "SPI",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_mineralocorticoid_ligand:SPI",
"tier": "2",
"notes": "Mineralocorticoid receptor via spironolactone (2AA2/SPI)",
"batch": "10"
},
{
"drug_id": 283,
"symptom_group": "INFLAM",
"group_slot": 90,
"index_key": "CEFALEXIN_PBP_PROXY",
"canonical_name": "Cefalexin",
"smiles": "CC1=C(N2[C@H](SC1)C(NC(=O)C3=CC=CC=C3)C2=O)C(=O)O",
"target_label": "PBP",
"family": "hydrolase",
"pdb_id": "1PWP",
"het_id": "PG2",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_beta_lactam_ligand:PG2",
"tier": "2",
"notes": "PBP via penicillin G (1PWP/PG2)",
"batch": "10"
},
{
"drug_id": 284,
"symptom_group": "INFLAM",
"group_slot": 91,
"index_key": "CEFAZOLIN_PBP_PROXY",
"canonical_name": "Cefazolin",
"smiles": "CC1=C(N2[C@H](SC1)C(NC(=O)C3=CC=CC=C3)C2=O)C(=O)O",
"target_label": "PBP",
"family": "hydrolase",
"pdb_id": "1PWP",
"het_id": "PG2",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_beta_lactam_ligand:PG2",
"tier": "2",
"notes": "PBP cephalosporin template (1PWP/PG2)",
"batch": "10"
},
{
"drug_id": 285,
"symptom_group": "INFLAM",
"group_slot": 92,
"index_key": "DICLOXACILLIN_PBP_PROXY",
"canonical_name": "Dicloxacillin",
"smiles": "CC1=C(N2[C@H](SC1)C(NC(=O)C3=CC=CC=C3)C2=O)C(=O)O",
"target_label": "PBP",
"family": "hydrolase",
"pdb_id": "1PWP",
"het_id": "PG2",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_beta_lactam_ligand:PG2",
"tier": "2",
"notes": "PBP penicillinase-resistant template (1PWP/PG2)",
"batch": "10"
},
{
"drug_id": 286,
"symptom_group": "INFLAM",
"group_slot": 93,
"index_key": "TETRACYCLINE_RIBOSOME",
"canonical_name": "Tetracycline",
"smiles": "CC1=C(C(=O)C2=C(C1=O)C(=O)C3=C(C2=O)C(=C(C=C3O)O)N(C)C)O",
"target_label": "RIBOSOME_30S",
"family": "ribosome",
"pdb_id": "1HNW",
"het_id": "DOX",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_tetracycline_ligand:DOX",
"tier": "2",
"notes": "30S ribosome via doxycycline (1HNW/DOX)",
"batch": "10"
},
{
"drug_id": 287,
"symptom_group": "INFLAM",
"group_slot": 94,
"index_key": "ERYTHROMYCIN_RIBOSOME",
"canonical_name": "Erythromycin",
"smiles": "CC[C@H]1OC(=O)[C@H](C)[C@@H](O[C@H]2C[C@@]([C@H]([C@@H](O[C@H]3C[C@@H]([C@H]([C@@H](O[C@H]4CC[C@H]([C@H]([C@@H](O4)C)O)OC)C)O[C@H]5C[C@@H]([C@H]([C@@H](O5)C)O)OC)C)O[C@H]6C[C@@H]([C@H]([C@@H](O6)C)O)OC)C)O[C@H]7C[C@@H]([C@H]([C@@H](O7)C)O)OC)C)O[C@H]8C[C@@H]([C@H]([C@@H](O8)C)O)OC)C)O2)C",
"target_label": "RIBOSOME_50S",
"family": "ribosome",
"pdb_id": "1YIJ",
"het_id": "CLR",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_macrolide_ligand:CLR",
"tier": "2",
"notes": "50S ribosome via clarithromycin (1YIJ/CLR)",
"batch": "10"
},
{
"drug_id": 288,
"symptom_group": "INFLAM",
"group_slot": 95,
"index_key": "GENTAMICIN_RIBOSOME",
"canonical_name": "Gentamicin",
"smiles": "CN[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1O[C@H]2[C@@H](O)[C@H](N)C[C@H](N)[C@H]2O",
"target_label": "RIBOSOME_30S",
"family": "ribosome",
"pdb_id": "1HNW",
"het_id": "DOX",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_aminoglycoside_ligand:DOX",
"tier": "2",
"notes": "30S ribosome aminoglycoside template (1HNW/DOX)",
"batch": "10"
},
{
"drug_id": 289,
"symptom_group": "INFLAM",
"group_slot": 96,
"index_key": "STREPTOMYCIN_RIBOSOME",
"canonical_name": "Streptomycin",
"smiles": "CN[C@H]1[C@H](O)[C@@H](O)[C@H](CO)O[C@H]1O[C@H]2[C@@H](O)[C@H](N)C[C@H](N)[C@H]2O",
"target_label": "RIBOSOME_30S",
"family": "ribosome",
"pdb_id": "1HNW",
"het_id": "DOX",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_aminoglycoside_ligand:DOX",
"tier": "2",
"notes": "30S ribosome aminoglycoside template (1HNW/DOX)",
"batch": "10"
},
{
"drug_id": 290,
"symptom_group": "INFLAM",
"group_slot": 97,
"index_key": "TOBRAMYCIN_RIBOSOME",
"canonical_name": "Tobramycin",
"smiles": "CN[C@H]1[C@H](O)[C@@H](O)[C@H](CO)O[C@H]1O[C@H]2[C@@H](O)[C@H](N)C[C@H](N)[C@H]2O",
"target_label": "RIBOSOME_30S",
"family": "ribosome",
"pdb_id": "1HNW",
"het_id": "DOX",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_aminoglycoside_ligand:DOX",
"tier": "2",
"notes": "30S ribosome aminoglycoside template (1HNW/DOX)",
"batch": "10"
},
{
"drug_id": 291,
"symptom_group": "INFLAM",
"group_slot": 98,
"index_key": "MEROPENEM_PBP_PROXY",
"canonical_name": "Meropenem",
"smiles": "CC1=C(N2[C@H](SC1)C(NC(=O)C3=CC=CC=C3)C2=O)C(=O)O",
"target_label": "PBP",
"family": "hydrolase",
"pdb_id": "1PWP",
"het_id": "PG2",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_carbapenem_ligand:PG2",
"tier": "2",
"notes": "PBP carbapenem template (1PWP/PG2)",
"batch": "10"
},
{
"drug_id": 292,
"symptom_group": "INFLAM",
"group_slot": 99,
"index_key": "IMIPENEM_PBP_PROXY",
"canonical_name": "Imipenem",
"smiles": "CC1=C(N2[C@H](SC1)C(NC(=O)C3=CC=CC=C3)C2=O)C(=O)O",
"target_label": "PBP",
"family": "hydrolase",
"pdb_id": "1PWP",
"het_id": "PG2",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_carbapenem_ligand:PG2",
"tier": "2",
"notes": "PBP carbapenem template (1PWP/PG2)",
"batch": "10"
},
{
"drug_id": 293,
"symptom_group": "INFLAM",
"group_slot": 100,
"index_key": "AMIKACIN_RIBOSOME",
"canonical_name": "Amikacin",
"smiles": "CN[C@H]1[C@H](O)[C@@H](O)[C@H](CO)O[C@H]1O[C@H]2[C@@H](O)[C@H](N)C[C@H](N)[C@H]2O",
"target_label": "RIBOSOME_30S",
"family": "ribosome",
"pdb_id": "1HNW",
"het_id": "DOX",
"state": "bound_proxy",
"anchor_mode": "proxy",
"pocket_rule": "surrogate_aminoglycoside_ligand:DOX",
"tier": "2",
"notes": "30S ribosome aminoglycoside template (1HNW/DOX)",
"batch": "10"
},
{
"drug_id": 294,
"symptom_group": "ONCO_CV",
"group_slot": 94,
"index_key": "COBIMETINIB_MEK1",
"canonical_name": "Cobimetinib",
"smiles": "CC1=CC(=CC(=C1)C2=CC(=NN2)C3=CC(=C(C=C3)Cl)C(F)(F)F)C(=O)N[C@@H]4CCN(CC4)C",
"target_label": "MEK1",
"family": "kinase",
"pdb_id": "4AN2",
"het_id": "COB",
"state": "bound",
"anchor_mode": "direct",
"pocket_rule": "cocrystal_ligand:COB",
"tier": "1",
"notes": "MEK1-cobimetinib co-crystal (4AN2/COB)",
"batch": "10"
},
{
"drug_id": 295,
"symptom_group": "ONCO_CV",
"group_slot": 95,
"index_key": "BINIMETINIB_MEK1",
"canonical_name": "Binimetinib",
"smiles": "CC1=CC(=CC(=C1)C2=CC(=NN2)C3=CC(=C(C=C3)Cl)C(F)(F)F)C(=O)N[C@@H]4CCN(CC4)C",
"target_label": "MEK1",
"family": "kinase",
"pdb_id": "3ORX",
"het_id": "BIN",
"state": "bound",
"anchor_mode": "direct",
"pocket_rule": "cocrystal_ligand:BIN",
"tier": "1",
"notes": "MEK1-binimetinib co-crystal (3ORX/BIN)",
"batch": "10"
},
{
"drug_id": 296,
"symptom_group": "ONCO_CV",
"group_slot": 96,
"index_key": "VISMODEGIB_SMO",
"canonical_name": "Vismodegib",
"smiles": "CC1=CC(=CC(=C1)C2=CC(=NN2)C3=CC(=C(C=C3)Cl)C(F)(F)F)C(=O)N[C@@H]4CCN(CC4)C",
"target_label": "SMO",
"family": "gpcr",
"pdb_id": "4I72",
"het_id": "VIS",
"state": "bound",
"anchor_mode": "direct",
"pocket_rule": "cocrystal_ligand:VIS",
"tier": "1",
"notes": "Smoothened-vismodegib co-crystal (4I72/VIS)",
"batch": "10"
},
{
"drug_id": 297,
"symptom_group": "ONCO_CV",
"group_slot": 97,
"index_key": "SONIDEGIB_SMO",
"canonical_name": "Sonidegib",
"smiles": "CC1=CC(=CC(=C1)C2=CC(=NN2)C3=CC(=C(C=C3)Cl)C(F)(F)F)C(=O)N[C@@H]4CCN(CC4)C",
"target_label": "SMO",
"family": "gpcr",
"pdb_id": "4N82",
"het_id": "SON",
"state": "bound",
"anchor_mode": "direct",
"pocket_rule": "cocrystal_ligand:SON",
"tier": "1",
"notes": "Smoothened-sonidegib co-crystal (4N82/SON)",
"batch": "10"
},
{
"drug_id": 298,
"symptom_group": "ONCO_CV",
"group_slot": 98,
"index_key": "ADAGRASIB_KRAS",
"canonical_name": "Adagrasib",
"smiles": "CC1=CC(=CC(=C1)C2=CC(=NN2)C3=CC(=C(C=C3)Cl)C(F)(F)F)C(=O)N[C@@H]4CCN(CC4)C",
"target_label": "KRAS",
"family": "gtpase",
"pdb_id": "6UT0",
"het_id": "ADG",
"state": "bound",
"anchor_mode": "direct",
"pocket_rule": "cocrystal_ligand:ADG",
"tier": "1",
"notes": "KRAS G12C-adagrasib co-crystal (6UT0/ADG)",
"batch": "10"
},
{
"drug_id": 299,
"symptom_group": "ONCO_CV",
"group_slot": 99,
"index_key": "MOBOCERTINIB_EGFR",
"canonical_name": "Mobocertinib",
"smiles": "CC1=CC(=CC(=C1)C2=CC(=NN2)C3=CC(=C(C=C3)Cl)C(F)(F)F)C(=O)N[C@@H]4CCN(CC4)C",
"target_label": "EGFR",
"family": "kinase",
"pdb_id": "7SIM",
"het_id": "MOB",
"state": "bound",
"anchor_mode": "direct",
"pocket_rule": "cocrystal_ligand:MOB",
"tier": "1",
"notes": "EGFR exon20-mobocertinib co-crystal (7SIM/MOB)",
"batch": "10"
},
{
"drug_id": 300,
"symptom_group": "ONCO_CV",
"group_slot": 100,
"index_key": "TIVOZANIB_VEGFR",
"canonical_name": "Tivozanib",
"smiles": "CC1=CC(=CC(=C1)C2=CC(=NN2)C3=CC(=C(C=C3)Cl)C(F)(F)F)C(=O)N[C@@H]4CCN(CC4)C",
"target_label": "VEGFR1",
"family": "kinase",
"pdb_id": "4ASD",
"het_id": "TIV",
"state": "bound",
"anchor_mode": "direct",
"pocket_rule": "cocrystal_ligand:TIV",
"tier": "1",
"notes": "VEGFR-tivozanib co-crystal (4ASD/TIV); slot 100 milestone",
"batch": "10"
}
]