ENCODE / src /frontend /styles.css
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Search defaults, LLM search count and grading, links panel clicks and card under the graph; asset version label9
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:root {
--dark: #141c25; --blue: #3b8bbf; --blue-d: #357aa8; --line: #e2e6ea;
--text: #2c3744; --muted: #8a97a4; --ok: #2e7d52; --warn: #8a5a00;
}
* { box-sizing: border-box; }
body { margin: 0; color: var(--text); background: #f7f9fb;
font: 15px/1.5 system-ui, -apple-system, Segoe UI, Roboto, sans-serif; }
/* body only: overflow hidden on <html> turns the root into the scroll
container and the sticky top bar stops tracking the viewport. */
body.panel-open { overflow: hidden; }
/* Keep the scrollbar's space when an overlay locks page scroll, so the layout
does not jump 15px sideways each time a detail page or panel opens. */
html { scrollbar-gutter: stable; }
/* Sticky, not in flow: the detail page is a fixed overlay that starts 56px
down, and it must always sit under this bar, not under wherever the page
was scrolled to when a row was clicked. z-index sits above .detail-page (8)
and below every drawer, overlay and modal. */
.topbar { position: sticky; top: 0; z-index: 9; display: flex; align-items: center; min-width: 0; background: var(--dark); color: #fff; height: 56px; padding: 0 18px; }
/* auto margin keeps the buttons right-aligned when the title is hidden. */
.brand { margin-right: auto; font-weight: 800; letter-spacing: 1px; font-size: 19px; }
/* The bar has a fixed height, so the title must never wrap; it clips with an
ellipsis and goes away on narrow windows (zoomed laptops, half screens). */
.topbar-title { flex: 1; min-width: 0; padding: 0 12px; text-align: center; font-weight: 700; font-size: 18px; white-space: nowrap; overflow: hidden; text-overflow: ellipsis; }
@media (max-width: 720px) { .topbar-title { display: none; } }
.basket-btn { display: inline-flex; align-items: center; gap: 7px; margin-right: 10px; background: transparent; color: #dbe5ec; border: 1px solid #43515f; border-radius: 6px; padding: 6px 10px; font: inherit; font-size: 13px; cursor: pointer; }
.basket-btn:hover { color: #fff; background: #1d2a36; border-color: #667786; }
.basket-btn:focus-visible { outline: 2px solid #8bc7ed; outline-offset: 2px; }
.basket-count { display: inline-flex; align-items: center; justify-content: center; min-width: 20px; height: 20px; color: #fff; background: var(--blue); border-radius: 10px; padding: 0 6px; font-size: 11px; font-weight: 700; font-variant-numeric: tabular-nums; }
.category-select { width: 100%; padding: 10px 12px; border-radius: 7px; border: 1px solid #33424f; background: #1d2731; color: #fff; font-size: 15px; cursor: pointer; }
.category-select:focus { outline: none; border-color: var(--blue); }
.category-select option:disabled { color: #7d8b98; }
/* The search bar in code-lookup mode: monospace, because what goes in it is a
code. The placeholder stays proportional so the hint reads as prose. */
.query-code { font-family: ui-monospace, SFMono-Regular, Menlo, monospace; }
.query-code::placeholder { font-family: system-ui, -apple-system, "Segoe UI", Roboto, sans-serif; }
.layout { display: flex; min-height: calc(100vh - 56px); }
.sidebar { width: 270px; flex-shrink: 0; background: var(--dark); color: #cdd6df; padding: 22px 20px; }
.side-label { display: block; font-size: 12px; font-weight: 700; letter-spacing: .6px; text-transform: uppercase; margin: 22px 0 8px; color: #fff; }
.side-label:first-child { margin-top: 0; }
#system-filters, #code-lookup { margin-top: 26px; border-top: 1px solid #2a3742; padding-top: 14px; }
/* The count box doubles as a vertical scrubber. The chevrons and the
ns-resize cursor are the whole affordance; clicking without dragging
focuses it for typing as usual. */
.k-input { width: 100%; padding: 10px 30px 10px 12px; border-radius: 7px; border: 1px solid #33424f; background: #1d2731; color: #fff; font-size: 15px;
cursor: ns-resize; touch-action: none; appearance: textfield; -moz-appearance: textfield;
background-image: url('data:image/svg+xml,<svg xmlns="http://www.w3.org/2000/svg" width="10" height="18" viewBox="0 0 10 18"><path d="M2 6.5 5 3.5 8 6.5 M2 11.5 5 14.5 8 11.5" fill="none" stroke="%238fa1b0" stroke-width="1.5" stroke-linecap="round" stroke-linejoin="round"/></svg>');
background-repeat: no-repeat; background-position: right 10px center; }
.k-input::-webkit-outer-spin-button, .k-input::-webkit-inner-spin-button { -webkit-appearance: none; margin: 0; }
.k-input:focus { outline: none; border-color: var(--blue); cursor: text; }
.k-input:disabled { opacity: .4; cursor: not-allowed; }
.side-label-off { color: #6b7b88; }
.filters { margin: 4px 0; }
.filter-opt { display: flex; align-items: center; gap: 9px; padding: 4px 0; font-size: 14px; cursor: pointer; }
.filter-opt input { accent-color: var(--blue); width: 15px; height: 15px; }
/* The last selected code system: it stays checked and cannot be cleared, since
a search over no code system has nothing to return. Dimmed rather than
hidden so it still reads as a choice that exists; the row's title says why. */
.filter-opt-locked { cursor: not-allowed; opacity: .55; }
.filter-opt-locked input { cursor: not-allowed; }
/* Collapsed Advanced group: search model + result count live here. */
.advanced { margin-top: 26px; border-top: 1px solid #2a3742; padding-top: 14px; }
.advanced > summary { font-size: 12px; font-weight: 700; letter-spacing: .6px; text-transform: uppercase; color: #8fa1b0; cursor: pointer; }
.advanced > summary:hover, .advanced[open] > summary { color: #fff; }
.advanced .side-label { margin-top: 16px; }
.export { width: 100%; margin-top: 30px; background: var(--blue); color: #fff; border: 0; border-radius: 6px; padding: 11px; font-size: 14px; cursor: pointer; }
.export:hover { background: var(--blue-d); }
.content { flex: 1; min-width: 0; max-width: 1080px; margin: 0 auto; padding: 30px 24px 70px; width: 100%; overflow-x: clip; }
.search-for { text-align: center; font-size: 12px; letter-spacing: 1px; color: var(--muted); text-transform: uppercase; margin: 6px 0 14px; }
/* The caption retires once there are results, but it keeps its space rather
than collapsing: display:none would pull the search bar upward and the whole
page would jump under the user's cursor mid-task. */
.caption-off { visibility: hidden; }
.search-row { display: flex; gap: 8px; }
.query-wrap { position: relative; flex: 1; min-width: 0; display: flex; }
/* Recent searches for the current category. Opens on click with the full list;
a <datalist> only opens while typing and paints a caret inside the field. */
.recent-panel { position: absolute; z-index: 30; top: calc(100% + 6px); left: 0; right: 0; margin: 0; padding: 4px; list-style: none; max-height: 280px; overflow-y: auto; background: #fff; border: 1px solid var(--line); border-radius: 9px; box-shadow: 0 10px 28px rgba(20, 28, 37, .13); }
.recent-item { padding: 8px 12px; border-radius: 6px; font-size: 15px; color: var(--text); cursor: pointer; display: flex; align-items: center; gap: 10px; }
.recent-item:hover, .recent-item.active { background: #eaf3fb; }
.recent-item .recent-when { margin-left: auto; font-size: 12px; color: var(--muted); }
.recent-empty { padding: 8px 12px; font-size: 14px; color: var(--muted); }
/* min-width 0 lets the input shrink below its intrinsic width, so the Search
button is never clipped off the right edge of a narrow window. */
.query { flex: 1; min-width: 0; width: 100%; padding: 13px 16px; border: 1px solid var(--line); border-radius: 9px; background: #fff; font-size: 16px; }
.query:focus { outline: none; border-color: var(--blue); }
.search-btn { flex-shrink: 0; background: var(--blue); color: #fff; border: 0; border-radius: 9px; padding: 0 26px; font-size: 15px; font-weight: 600; cursor: pointer; }
.search-btn:hover { background: var(--blue-d); }
/* -- query planner -------------------------------------------------------- */
/* Sidebar mode switch: a segmented control, not a dropdown, so both modes are
visible at once and the tool never looks like it only does one thing. */
.mode-switch { display: flex; gap: 4px; background: #1d2731; border: 1px solid #33424f; border-radius: 8px; padding: 3px; margin-bottom: 22px; }
.mode-btn { flex: 1; background: transparent; color: #9dabb8; border: 0; border-radius: 6px; padding: 9px 4px; font: inherit; font-size: 13px; font-weight: 600; white-space: nowrap; cursor: pointer; }
.mode-btn:hover { color: #fff; }
.mode-btn.on { background: var(--blue); color: #fff; }
.mode-btn:focus-visible { outline: 2px solid #8bc7ed; outline-offset: 1px; }
/* resize:none removes the drag handle the browser draws in the bottom-right
corner of a textarea, which read as stray "//" glyphs against the border. */
.plan-query { resize: none; min-height: 52px; font-family: inherit; line-height: 1.45; }
/* Streamed reasoning. Fixed height with its own scroll so a 16,000-character
monologue never pushes the plan off the screen; muted and monospaced so it
reads as the model's working notes rather than as a result. */
/* One complete sentence of the model's reasoning at a time, at reading pace.
The full text stays available underneath, verbatim. */
.cot { margin-top: 8px; border: 1px solid var(--line); border-radius: 8px; background: #fbfcfd; }
.cot > summary { padding: 8px 12px; font-size: 12px; font-weight: 700; letter-spacing: .4px; text-transform: uppercase; color: var(--muted); cursor: pointer; }
.cot > summary:hover { color: var(--text); }
.cot-text { max-height: 190px; overflow-y: auto; margin: 0; padding: 0 12px 12px; font: 12px/1.6 ui-monospace, SFMono-Regular, Menlo, monospace; color: #6b7885; white-space: pre-wrap; word-break: break-word; }
/* Add-a-model dialog. The element is its own backdrop so it never collides
with the drawer's #overlay. */
.modal { position: fixed; inset: 0; z-index: 60; display: flex; align-items: center; justify-content: center; background: rgba(20, 28, 37, .55); padding: 20px; }
.modal-card { width: 100%; max-width: 460px; max-height: 90vh; overflow-y: auto; background: #fff; border-radius: 12px; padding: 22px 24px; box-shadow: 0 18px 50px rgba(20, 28, 37, .3); }
.modal-card h3 { margin: 0 0 14px; font-size: 17px; }
/* Announced by screen readers, never painted: the visible counter next to it
updates 4x a second and would be unbearable in a live region. */
.sr-only { position: absolute; width: 1px; height: 1px; margin: -1px; padding: 0; overflow: hidden; clip: rect(0 0 0 0); white-space: nowrap; border: 0; }
.modal-text { font-size: 14px; color: var(--text); margin: 0; line-height: 1.5; }
.modal-actions { display: flex; align-items: center; justify-content: flex-end; gap: 14px; margin-top: 16px; }
.modal-actions .search-btn { padding: 9px 20px; border-radius: 8px; }
/* The plan bar persists across searches, so it reads as a standing worklist
rather than as the result of the last action. */
.plan-bar { border: 1px solid #c7dcf1; background: #f5faff; border-radius: 10px; padding: 12px 14px; margin-top: 18px; }
.plan-head { display: flex; align-items: baseline; gap: 10px; margin-bottom: 10px; }
.plan-head-q { flex: 1; font-weight: 600; color: #24486e; font-size: 14px; }
.plan-note { color: #5a6773; font-size: 14px; margin: 0 0 8px; }
.plan-chips { margin-bottom: 0; align-items: center; }
/* The chip shell carries the border; the label and the pencil are separate
controls inside it (nested <button>s would be invalid markup). */
.plan-chip { display: inline-flex; align-items: stretch; background: #fff; border: 1px solid #bcdcec; border-radius: 14px; overflow: hidden; font-size: 13px; }
.plan-chip-go { display: inline-flex; align-items: center; gap: 6px; background: none; border: 0; color: #1f6f9e; font: inherit; padding: 3px 8px 3px 11px; cursor: pointer; }
.plan-chip-go:hover { background: var(--blue); color: #fff; }
.plan-chip-go:hover .mention-cat { color: #dbe9f3; }
.plan-chip-edit { background: none; border: 0; border-left: 1px solid #dcecf4; color: var(--muted); font: inherit; font-size: 11px; padding: 0 8px; cursor: pointer; }
.plan-chip-edit:hover { background: var(--blue); color: #fff; }
/* Green marks the chip currently being looked at. Exactly one at a time, so
it reads as focus rather than as an accumulating tally. */
.plan-chip.current { background: #e8f3ea; border-color: #7fb894; box-shadow: 0 0 0 2px rgba(46,125,82,.14); }
.plan-chip.current .plan-chip-go { color: var(--ok); font-weight: 600; }
.plan-chip.current .plan-chip-go .mention-cat { color: #5d9575; }
.plan-chip.current .plan-chip-edit { border-left-color: #cfe3d5; }
.plan-chip.editing { border-color: var(--blue); box-shadow: 0 0 0 2px rgba(59,139,191,.18); }
.plan-chip-input { border: 0; outline: none; font: inherit; font-size: 13px; color: var(--text); padding: 3px 4px 3px 11px; min-width: 70px; background: transparent; }
.plan-chip-ok, .plan-chip-cancel { background: none; border: 0; border-left: 1px solid #dcecf4; font: inherit; font-size: 12px; padding: 0 8px; cursor: pointer; }
.plan-chip-ok { color: var(--ok); }
.plan-chip-ok:hover { background: var(--ok); color: #fff; }
.plan-chip-cancel { color: var(--muted); }
.plan-chip-cancel:hover { background: #d9534f; color: #fff; }
.status { color: #5a6773; font-size: 14px; margin: 22px 0 10px; min-height: 20px; }
.results { display: flex; flex-direction: column; gap: 14px; }
/* empty state */
.empty { text-align: center; color: var(--muted); padding: 48px 10px; }
.empty-title { font-size: 26px; font-weight: 400; color: #6b7885; margin: 0 0 10px; }
.empty-sub { font-size: 15px; margin: 0 0 18px; }
.example-chip { background: #fff; border: 1px solid var(--line); color: var(--blue); border-radius: 16px; padding: 6px 14px; font-size: 13px; cursor: pointer; }
.example-chip:hover { background: var(--blue); color: #fff; border-color: var(--blue); }
/* code-result filter chips (narrow the table by code type) */
.filter-bar { display: flex; flex-wrap: wrap; align-items: center; gap: 8px; margin: 0 0 12px; }
.filter-bar:empty { display: none; }
.fchip { background: #fff; border: 1px solid var(--line); color: #5a6773; border-radius: 14px; padding: 4px 12px; font-size: 12px; cursor: pointer; font-variant-numeric: tabular-nums; }
.fchip:hover { border-color: var(--blue); color: var(--blue); }
.fchip.on { background: var(--blue); border-color: var(--blue); color: #fff; }
.fchip-all { font-weight: 600; color: var(--blue); border-color: #bcdcec; background: #f8fbfd; }
.fchip-all:hover { background: #eef5fa; }
.fchip-all:disabled { color: var(--muted); border-color: var(--line); background: #f3f6f8; cursor: default; }
.fchip-all:disabled:hover { background: #f3f6f8; border-color: var(--line); }
.fchip:disabled { color: var(--muted); border-color: var(--line); background: #f3f6f8; cursor: default; }
/* Client-side pages over the one fetched result set. */
.pager { display: flex; justify-content: center; align-items: center; gap: 10px; margin-top: 16px; }
.pager-info { font-size: 13px; color: var(--muted); font-variant-numeric: tabular-nums; }
/* code results table */
.table-wrap { border: 1px solid var(--line); border-radius: 10px; overflow-x: auto; background: #fff; }
.code-table { width: 100%; border-collapse: collapse; font-size: 14px; }
.code-table th { text-align: left; font-weight: 600; color: #6b7885; background: #f6f8fa; border-bottom: 1px solid var(--line); padding: 12px 14px; white-space: nowrap; }
.code-table td { border-bottom: 1px solid #eef1f4; padding: 11px 14px; vertical-align: top; }
.code-table tbody tr:last-child td { border-bottom: 0; }
.code-table tbody tr { transition: background-color .12s; }
.code-table tbody tr:hover { background: #f9fbfc; }
.code-table tbody tr.row-click:hover { background: #e7f1f9; box-shadow: inset 3px 0 0 var(--blue); }
.ann-cell { text-align: center; width: 62px; }
.ann-cell input { accent-color: var(--blue); width: 15px; height: 15px; cursor: pointer; }
.col-rank { color: var(--muted); font-variant-numeric: tabular-nums; width: 54px; }
.col-type { color: #5a6773; white-space: nowrap; }
/* Phenotype code-evidence summary: wraps, so the table fits and the
Relevance column stays on screen. */
.col-codes { white-space: normal; min-width: 110px; max-width: 210px; }
.col-code { font-family: ui-monospace, SFMono-Regular, Menlo, monospace; color: #2c5e7e; word-break: break-all; max-width: 280px; }
.col-rel { text-align: right; font-variant-numeric: tabular-nums; color: var(--text); width: 84px; white-space: nowrap; }
.col-desc { color: var(--text); min-width: 160px; }
.col-code span { font-family: inherit; }
/* Rows open the code detail drawer; the chevron is the visible affordance. */
.code-table tbody tr.row-click { cursor: pointer; }
.code-table tbody tr.row-click:focus-visible { outline: 2px solid var(--blue); outline-offset: -2px; }
.derived-map { color: #a06a00; }
.code-detail-title { font-family: ui-monospace, SFMono-Regular, Menlo, monospace; }
.tag { font-size: 11px; text-transform: uppercase; letter-spacing: .4px; color: var(--muted); border: 1px solid var(--line); border-radius: 5px; padding: 2px 7px; }
.tag-kind { color: #1f6f9e; border-color: #bcdcec; background: #f5faff; }
.tag-warn { color: var(--warn); border-color: #e8d9a8; background: #fdf6e3; }
/* Single-select grade: one segmented control, click the active grade to clear. */
.grade-seg { display: inline-flex; border: 1px solid var(--line); border-radius: 7px; overflow: hidden; background: #fff; }
.grade-opt { background: none; border: 0; border-left: 1px solid var(--line); padding: 4px 10px; font: inherit; font-size: 12px; color: #5a6773; cursor: pointer; white-space: nowrap; }
.grade-opt:first-child { border-left: 0; }
.grade-opt:hover { background: #f2f6f9; color: var(--blue); }
.grade-opt.on { background: var(--blue); color: #fff; }
.grade-opt:focus-visible { outline: 2px solid #8bc7ed; outline-offset: -2px; }
.grade-seg-compact .grade-opt { padding: 3px 8px; font-size: 11px; }
.ann-cell-grade { width: auto; text-align: left; white-space: nowrap; }
.summary { color: #5a6773; margin: 10px 0 12px; }
.chips { display: flex; flex-wrap: wrap; gap: 6px; margin-bottom: 8px; }
.chip-static { font-size: 11px; color: #5a6773; background: #f1f5f8; border: 1px solid var(--line); border-radius: 5px; padding: 2px 8px; }
.notice { border-radius: 7px; padding: 8px 12px; font-size: 14px; margin: 0 0 12px; }
.notice-suggest { background: #eef4fb; border: 1px solid #c7dcf1; color: #24486e; }
.mention-cat { font-size: 11px; text-transform: uppercase; letter-spacing: .4px; color: var(--muted); }
.notice-low { background: #fdf6e3; border: 1px solid #e8d9a8; color: var(--warn); }
.suggest-link { background: none; border: 0; padding: 0; font: inherit; font-weight: 700; color: var(--blue); cursor: pointer; }
.suggest-link:hover { text-decoration: underline; }
.link { background: none; border: 0; color: var(--blue); cursor: pointer; font-size: 14px; padding: 0; }
.link:hover { text-decoration: underline; }
.pid { color: var(--muted); font-size: 12px; }
.submit-row { display: flex; justify-content: center; align-items: center; gap: 12px; margin-top: 26px; }
.annotator { padding: 10px 14px; border: 1px solid var(--line); border-radius: 7px; font-size: 14px; min-width: 220px; }
.submit-btn { background: var(--blue); color: #fff; border: 0; border-radius: 7px; padding: 11px 22px; font-size: 14px; cursor: pointer; }
.submit-btn:hover { background: var(--blue-d); }
.submit-msg { color: var(--ok); font-size: 13px; }
/* Result grading is opt-in (sidebar → Advanced → Validation & Feedback). The
controls are hidden by CSS from one class on <body> rather than by skipping
their construction, so the grade column header and its cells can never fall
out of step with each other, and a grade already picked survives a toggle. */
.ann-col-grade, .ann-cell-grade, .grade-seg, .submit-row { display: none; }
body.review-mode .ann-col-grade, body.review-mode .ann-cell-grade { display: table-cell; }
body.review-mode .grade-seg { display: inline-flex; }
body.review-mode .submit-row:not(.hidden) { display: flex; }
/* Absence marker, e.g. a VA lab test with no LOINC. Reads as an aside next to
the code, not as a warning: an unmapped code is a fact, not an error. */
.tag-muted { background: #eef1f4; color: #6b7a87; border: 1px solid var(--line); margin-left: 8px;
white-space: nowrap; }
/* Ignored-words panel under the toolbar while Merge duplicates is on: one
chip per word (click removes), an add box, Reset once the list is edited. */
.merge-rules { margin: 2px 0 10px; }
.merge-rules .chips { margin-bottom: 4px; align-items: center; }
.chip-word { font-family: inherit; cursor: pointer; }
.chip-word:hover { text-decoration: line-through; border-color: #b3403c; color: #b3403c; }
.chip-add { font: inherit; font-size: 11px; color: var(--text); background: #fff;
border: 1px dashed var(--line); border-radius: 5px; padding: 2px 8px; width: 84px; }
.chip-add:focus { outline: none; border-color: var(--blue); }
.chip-reset { font-size: 11px; }
/* Merged duplicate names. The face row's tag folds its hidden members out. */
button.tag { cursor: pointer; font-family: inherit; }
button.tag:hover, button.tag.on { color: var(--blue); border-color: var(--blue); }
.dupe-hidden { display: none; }
.dupe-member td { background: #fafcfe; }
.hidden { display: none; }
/* Fast tooltip. Fixed so it escapes any scroll container, pointer-events off
so it can never sit between the cursor and what it explains. */
.tip { position: fixed; z-index: 60; max-width: 320px; background: #1d2731; color: #fff;
border-radius: 6px; padding: 7px 10px; font-size: 12.5px; line-height: 1.45;
box-shadow: 0 6px 20px rgba(20, 28, 37, .28); pointer-events: none;
white-space: pre-line; } /* titles carry \n bullet lists (merge rules) */
.drawer { position: fixed; top: 0; right: 0; height: 100dvh; width: min(640px, 94vw); background: #fff; border-left: 1px solid var(--line); padding: 24px 26px; overflow-y: auto; overscroll-behavior: contain; scrollbar-gutter: stable; z-index: 20; box-shadow: -8px 0 30px rgba(0,0,0,.15); }
.gen-note { color: var(--muted); font-size: 12px; margin: 4px 0 0; }
.chips-label { font-size: 11px; font-weight: 700; letter-spacing: .4px; text-transform: uppercase; color: var(--muted); align-self: center; margin-right: 4px; }
.drawer.hidden, .overlay.hidden { display: none; }
.drawer-close { position: sticky; top: 2px; float: right; margin: -12px -10px 0 0; z-index: 4; background: none; border: 0; color: var(--muted); font-size: 26px; cursor: pointer; line-height: 1; }
.drawer h2 { margin: 0 36px 8px 0; }
.drawer h4 { margin: 18px 0 6px; font-size: 13px; text-transform: uppercase; letter-spacing: .4px; color: var(--blue); }
.drawer-meta { display: flex; gap: 8px; align-items: center; flex-wrap: wrap; }
.drawer ul { margin: 6px 0; padding-left: 18px; color: #5a6773; font-size: 13px; }
.help-list { margin: 6px 0; padding-left: 20px; font-size: 14px; }
.help-list li { margin: 5px 0; }
/* Corpus statistics in the About panel. Denser than the results table: it is
read once, in a 640px drawer, and every column but the first is numeric. */
.corpus-table { width: 100%; border-collapse: collapse; font-size: 12.5px; }
.corpus-table th { text-align: left; font-weight: 600; color: #6b7885; background: #f6f8fa; border-bottom: 1px solid var(--line); padding: 8px 10px; white-space: nowrap; }
.corpus-table td { border-bottom: 1px solid #eef1f4; padding: 7px 10px; white-space: nowrap; }
.corpus-table tbody tr:last-child td { border-bottom: 0; }
.corpus-num { text-align: right; font-variant-numeric: tabular-nums; }
.overlay { position: fixed; inset: 0; background: rgba(0,0,0,.35); z-index: 10; }
.codegroup { border: 1px solid var(--line); border-radius: 8px; margin: 6px 0; padding: 4px 10px; }
.codegroup summary { cursor: pointer; font-size: 14px; }
.codegroup-count { float: right; color: #7fa6c9; font-size: 12px; line-height: 20px; }
.codes { margin-top: 8px; }
/* Fixed columns — code, description, source — so the source reads as a column
rather than floating after a description of unpredictable length. Mirrors the
column layout of the code-search results table. */
.code-row {
display: grid; grid-template-columns: 26px 104px 1fr 116px 24px; gap: 9px; align-items: center;
padding: 4px 0; border-top: 1px solid #eef1f4; font-size: 12px;
}
.code-row .collect-icon { width: 24px; height: 24px; min-height: 24px; }
.code-act { display: flex; justify-content: center; }
/* Group-level actions row inside a code group. */
.group-actions { display: flex; justify-content: flex-end; margin: 8px 0 2px; }
.group-add-all { background: #f8fbfd; border: 1px solid #bcdcec; color: var(--blue); border-radius: 6px; padding: 3px 10px; font: inherit; font-size: 11px; font-weight: 600; cursor: pointer; }
.group-add-all:hover { background: #eef5fa; border-color: #7fb4d6; }
.code { color: #2c5e7e; font-family: ui-monospace, monospace; word-break: break-all; }
.code-label { color: var(--text); }
.code-label-gap { color: var(--muted); font-style: italic; }
/* Which vocabulary supplied the label; hover carries release and match detail. */
.code-src {
justify-self: end; text-align: right; font-size: .72rem; letter-spacing: .02em;
color: var(--muted); cursor: help; line-height: 1.3;
}
.code-src:empty { cursor: default; }
.code-src-approximate { font-style: italic; }
/* Algorithm components (professor 1.4) */
.algo-components { border: 1px solid var(--line); border-radius: 8px; padding: 4px 12px; }
.algo-row { display: flex; gap: 12px; padding: 6px 0; border-top: 1px solid #eef1f4; font-size: 13px; }
.algo-row:first-child { border-top: 0; }
.algo-key { flex-shrink: 0; width: 120px; color: var(--muted); font-weight: 600; }
.algo-val { color: #5a6773; }
/* More information -> CIPHER (professor 1.5) */
.drawer-more { margin-top: 18px; }
.cipher-link { display: inline-block; color: var(--blue); font-weight: 600; text-decoration: none; background: none; border: 0; cursor: pointer; padding: 0; font-size: 14px; }
.cipher-link:hover { text-decoration: underline; }
/* knowledge-graph drawer (click a code -> parent/child ontology) */
.code-link { background: none; border: 0; padding: 0; font: inherit; color: #2c5e7e; font-family: ui-monospace, SFMono-Regular, Menlo, monospace; cursor: pointer; text-decoration: underline; text-decoration-style: dotted; text-underline-offset: 2px; }
.code-link:hover { color: var(--blue); text-decoration-style: solid; }
/* phenotype export + "view code hierarchy" triggers next to the code-groups heading */
.cg-head { display: flex; align-items: center; justify-content: space-between; gap: 10px; flex-wrap: wrap; }
.cg-btns { display: flex; align-items: center; gap: 8px; flex-wrap: wrap; }
.graph-btn { background: #eef5fa; color: var(--blue); border: 1px solid #bcdcec; border-radius: 6px; padding: 5px 11px; font-size: 12px; font-weight: 600; cursor: pointer; white-space: nowrap; }
.graph-btn:hover { background: var(--blue); color: #fff; border-color: var(--blue); }
/* collected-codes basket */
.collect-btn { display: inline-flex; align-items: center; justify-content: center; gap: 5px; min-height: 28px; background: #f8fbfd; border: 1px solid #bcdcec; color: var(--blue); border-radius: 6px; padding: 4px 9px; font: inherit; font-size: 12px; font-weight: 600; line-height: 1; cursor: pointer; white-space: nowrap; transition: background-color .15s, border-color .15s, color .15s; }
.collect-btn:hover { background: #eef5fa; border-color: #7fb4d6; }
.collect-btn:focus-visible { outline: 2px solid #8bc7ed; outline-offset: 2px; }
.collect-btn.on { background: #e8f2f9; color: #1f6f9e; border-color: #7fb4d6; }
.collect-mark { display: inline-flex; align-items: center; justify-content: center; width: 12px; height: 12px; font-size: 14px; font-weight: 700; line-height: 1; }
.collect-btn.on .collect-mark { font-size: 12px; }
.collect-icon { width: 30px; height: 30px; min-height: 30px; padding: 0; }
.collect-icon .collect-mark { width: auto; height: auto; }
.basket-actions { display: flex; gap: 18px; align-items: center; margin: 10px 0 16px; }
.basket-list { display: flex; flex-direction: column; gap: 6px; }
.basket-row { display: flex; align-items: center; gap: 10px; border: 1px solid var(--line); border-radius: 8px; padding: 8px 10px; }
.basket-main { display: flex; align-items: center; gap: 10px; flex: 1; min-width: 0; flex-wrap: wrap; }
.basket-desc { color: #5a6773; font-size: 13px; }
.basket-rm { background: none; border: 0; color: var(--muted); font-size: 18px; cursor: pointer; line-height: 1; }
.basket-rm:hover { color: var(--warn); }
/* Family grouping: nested code families in the phenotype Codes tab. */
.codefam { border: 0; margin: 2px 0; padding: 0 0 0 2px; }
.codefam-sum { display: flex; align-items: center; gap: 10px; cursor: pointer; padding: 5px 0; border-top: 1px solid #eef1f4; font-size: 12px; }
.codefam-count { color: var(--muted); }
.codefam-sum .group-add-all { margin-left: auto; }
.codes-nested { margin-left: 22px; }
.codes-nested .code-row { grid-template-columns: 26px 88px 1fr 110px 24px; }
/* Family header rows in the grouped code-search table. */
.fam-row td { background: #f2f6f9; color: #234b65; font-weight: 600; font-size: 13px; cursor: pointer; border-bottom: 1px solid var(--line); }
.fam-row.fam-collapsed td { color: var(--muted); }
.code-table tbody tr.fam-row:hover { background: #eaf3fb; }
/* Unvalidated (ENCODE-derived) mappings: amber code links, dashed graph edges. */
.code-link.derived-map { color: #a06a00; }
.code-link.derived-map:hover { color: #7c5200; }
/* ---- full-page detail view: pushes in over the results (left → right) ---- */
.detail-page {
position: fixed; top: 56px; left: 270px; right: 0; bottom: 0; z-index: 8;
background: #f7f9fb; overflow-y: auto; overscroll-behavior: contain;
transform: translateX(103%); visibility: hidden;
transition: transform .3s cubic-bezier(.2,.7,.3,1), visibility 0s .3s;
box-shadow: -8px 0 30px rgba(0,0,0,.12);
}
/* none, not translateX(0): an open page that keeps a transform stays a layer of its own, and the
links panel inside it draws softer text and solid leaders than it does anywhere else. */
.detail-page.open { transform: none; visibility: visible; transition: transform .3s cubic-bezier(.2,.7,.3,1); }
#main-screen { transition: transform .3s cubic-bezier(.2,.7,.3,1), opacity .3s; }
body.detail-open #main-screen { transform: translateX(-7%); opacity: .35; pointer-events: none; }
body.detail-open { overflow: hidden; }
.detail-topbar { position: sticky; top: 0; z-index: 5; background: #f7f9fb; padding: 12px 24px 10px; border-bottom: 1px solid var(--line); }
.detail-back { background: #fff; border: 1px solid var(--line); border-radius: 8px; color: var(--blue);
font: inherit; font-size: 13px; font-weight: 600; padding: 7px 14px; cursor: pointer; }
.detail-back:hover { border-color: var(--blue); background: #f5faff; }
.detail-body { padding: 18px 26px 70px; max-width: 1500px; }
.detail-body h2 { margin: 0 0 8px; }
.detail-body h4 { margin: 22px 0 8px; font-size: 15px; text-transform: uppercase; letter-spacing: .4px; color: var(--blue); }
.detail-sec { max-width: 900px; }
.detail-cols { display: flex; gap: 34px; flex-wrap: wrap; margin-top: 4px; }
.detail-cols > .detail-col { flex: 1; min-width: 320px; max-width: 640px; }
/* ---- narrow windows (zoomed laptops, half screens, phones) ----
The sidebar stacks above the content, and every overlay that assumed the
270px sidebar or a wide viewport spans the full width instead. */
@media (max-width: 720px) {
.layout { flex-direction: column; }
.sidebar { width: 100%; padding: 16px 16px 20px; }
.content { padding: 20px 16px 60px; }
.detail-page { left: 0; }
.detail-body { padding: 16px 16px 60px; }
.drawer { width: 100vw; border-left: 0; }
}
/* ---- links panel (rings.js): one ring graph per code; every mark encodes one thing ---- */
.lr { --lr-ok: #2e7d52; --lr-derived: #5f6b77; --lr-setline: #b4bec8; --lr-surface: #fff;
--lr-dark: #141c25; --lr-focus: #1f6fa3; --lr-hl: #e7f1f8; --lr-muted: #5f6b77; --lr-line: #e2e6ea; --lr-ink: #2c3744;
background: var(--lr-surface); border: 1px solid var(--lr-line); border-radius: 10px; color: var(--lr-ink); font-size: 14px; line-height: 1.4; margin: 8px 0 4px;
/* the face rings.js measures labels with, whatever the host page uses */
font-family: system-ui, -apple-system, "Segoe UI", Roboto, sans-serif; }
/* The panel sizes its own boxes, so it lays out the same in any host page. */
.lr, .lr *, .lr *::before, .lr *::after { box-sizing: border-box; }
.lr .mono { font-family: ui-monospace, SFMono-Regular, Menlo, Consolas, monospace; }
.lr button { font: inherit; color: inherit; }
.lr :focus-visible { outline: 2px solid var(--lr-focus); outline-offset: 2px; }
.lr-bar { display: flex; align-items: center; gap: 12px; flex-wrap: wrap; padding: 9px 14px; border-bottom: 1px solid var(--lr-line); }
.lr-where { font-weight: 600; font-size: 13px; }
.lr-where:empty { display: none; }
.lr-seg { display: inline-flex; flex-wrap: wrap; border: 1px solid var(--lr-line); border-radius: 7px; overflow: hidden; }
.lr-seg button { border: 0; background: transparent; padding: 4px 10px; cursor: pointer; border-right: 1px solid var(--lr-line); white-space: nowrap; font-size: 13px; }
.lr-seg button:last-child { border-right: 0; }
.lr-seg button[aria-pressed="true"] { background: var(--lr-dark); color: #fff; }
.lr-seg .n { opacity: .8; margin-left: 5px; font-variant-numeric: tabular-nums; }
.lr-legend { display: flex; gap: 16px; flex-wrap: wrap; font-size: 12px; color: var(--lr-muted); margin-left: auto; align-items: center; }
.lr-legend span { display: inline-flex; align-items: center; gap: 6px; }
.lr-btn { border: 1px solid var(--lr-line); background: var(--lr-surface); border-radius: 7px; padding: 5px 11px; cursor: pointer; font-size: 13px; }
.lr-btn:hover { border-color: var(--lr-muted); }
.lr-btn.pri { background: var(--lr-dark); border-color: var(--lr-dark); color: #fff; }
.lr-body { display: flex; align-items: stretch; }
.lr-graph { position: relative; flex: 1; min-width: 0; overflow: hidden; min-height: 120px; }
.lr-graph.loading { opacity: .5; }
.lr.lr-none .lr-graph::before { content: "No links for this code."; position: absolute; left: 16px; top: 16px; color: var(--lr-muted); }
.lr-edges { position: absolute; left: 0; top: 0; overflow: visible; pointer-events: none; }
.lr .e { fill: none; stroke-width: 1.3; opacity: .55; transition: opacity .15s; }
.lr .e.src { stroke: var(--lr-ok); }
.lr .e.no { stroke: var(--lr-derived); stroke-dasharray: 4 3; }
.lr .e.set { stroke: var(--lr-setline); opacity: 1; }
.lr .e.path { opacity: .9; stroke-width: 2; }
.lr .e.hot { opacity: 1; stroke-width: 2.4; }
.lr .e.trunk { stroke: var(--lr-line); stroke-width: 1.4; opacity: 1; }
/* A branch waiting on the left is faint until the pointer or the keyboard is on it. */
.lr .e.wait { opacity: .22; }
.lr .e.wait.hot { opacity: 1; }
.lr-node.stack:not(:hover):not(:focus-visible) { opacity: .4; }
/* Hovering a node that would turn the wheel lights up the waiting branch it would bring to the front. */
.lr .lr-node.stack.peek { opacity: 1; }
.lr .e.wait.peek { opacity: .6; }
.lr-node { position: absolute; left: 0; top: 0; border: 0; background: none; padding: 0; cursor: pointer; display: flex; align-items: center; gap: 6px;
white-space: nowrap; border-radius: 6px; text-align: left; --lr-tbg: rgba(255,255,255,.9); }
/* A node is a layer of its own only while it moves. At rest a layer can sit on a fractional pixel
(the detail page slides in), which blurs its label and turns its dotted leader solid. */
.lr.moving .lr-node { will-change: transform; }
.lr-node .g { flex: none; display: block; line-height: 0; border-radius: 50%; }
/* The label box is clear; only the words cover the lines, each on a backing just wider than itself. */
.lr-node .t { display: inline-flex; align-items: baseline; gap: 6px; border-radius: 4px; padding: 1px 3px; }
.lr-node .t > span { background: var(--lr-tbg); box-shadow: -2px 0 var(--lr-tbg), 2px 0 var(--lr-tbg); border-radius: 2px; }
.lr-node .c { font-family: ui-monospace, SFMono-Regular, Menlo, Consolas, monospace; font-size: 12px; font-weight: 600; }
.lr-node .nm { font-size: 12.5px; }
.lr-node .ct { font-size: 12px; color: var(--lr-muted); font-variant-numeric: tabular-nums; }
.lr-node .inc { font-size: 11px; color: var(--lr-ok); font-weight: 700; }
.lr-node .sys { font-size: 11px; color: var(--lr-muted); }
/* The leader from an outer-ring dot to its label in the label column. */
.lr-node .lead { flex: none; align-self: center; width: var(--pad, 0); height: 0; border-top: 1px dotted var(--lr-setline); margin: 0 -2px; }
.lr-node.lay-r { height: 24px; padding: 0 4px 0 3px; }
.lr-node.lay-b { flex-direction: column; gap: 2px; align-items: center; text-align: center; padding: 2px 3px; }
.lr-node.lay-a { flex-direction: column-reverse; gap: 2px; align-items: center; text-align: center; padding: 2px 3px; }
.lr-node.lay-al { flex-direction: column-reverse; gap: 2px; align-items: flex-end; text-align: right; padding: 2px 3px; }
.lr-node.lay-bl { flex-direction: column; gap: 2px; align-items: flex-end; text-align: right; padding: 2px 3px; }
.lr-node.lay-l { flex-direction: row-reverse; text-align: right; padding: 2px 3px; }
.lr-node.pn { gap: 12px; }
.lr-node.lay-l .t, .lr-node.lay-r.stack .t { flex-direction: column; align-items: flex-end; gap: 0; line-height: 1.25; }
.lr-node.lay-r.stack .t { align-items: flex-start; }
.lr-node.lay-a .nm, .lr-node.lay-b .nm, .lr-node.lay-al .nm, .lr-node.lay-bl .nm, .lr-node.lay-l .nm, .lr-node.lay-r.stack .nm {
white-space: normal; overflow-wrap: break-word; max-width: var(--lw, 150px); display: -webkit-box; -webkit-line-clamp: 2; -webkit-box-orient: vertical; overflow: hidden; }
.lr-node.lay-b .t, .lr-node.lay-a .t, .lr-node.lay-al .t, .lr-node.lay-bl .t { flex-direction: column; align-items: center; gap: 0; line-height: 1.25; }
.lr-node.lay-al .t, .lr-node.lay-bl .t { align-items: flex-end; }
.lr-node:hover, .lr-node.hot, .lr-node.sel { --lr-tbg: var(--lr-hl); }
.lr-node.hot .g, .lr-node.sel .g { box-shadow: 0 0 0 2px var(--lr-surface), 0 0 0 4px var(--lr-focus); }
.lr-node.dim .g { opacity: .4; }
.lr-node.dim .t, .lr-node.dim .c, .lr-node.dim .nm { color: var(--lr-muted); }
.lr-node.anchor { flex-direction: column; gap: 2px; align-items: center; padding: 0; z-index: 2; }
.lr-node.anchor .c { font-size: 13px; font-weight: 700; }
.lr-node.anchor .nm { font-size: 13px; font-weight: 700; }
.lr-node.set .nm b { font-weight: 700; }
.lr-node.more .t { border: 1px dashed var(--lr-muted); border-radius: 999px; padding: 1px 9px; font-size: 12px; background: var(--lr-tbg); }
.lr-node.empty { cursor: default; font-size: 12px; color: var(--lr-muted); }
.lr-node.empty .t { background: var(--lr-tbg); }
.lr-node.enter, .lr .e.enter { animation: lr-fin .28s ease-out both; }
/* A turning node's next label, carried in during the turn; the node's own dot stays the one drawn. */
.lr-node.ghost { pointer-events: none; }
.lr-node.ghost .g { visibility: hidden; }
@keyframes lr-fin { from { opacity: 0; } }
.lr-tip { position: absolute; z-index: 5; pointer-events: none; background: var(--lr-surface); border: 1px solid var(--lr-line); box-shadow: 0 4px 16px rgba(20,28,37,.08);
border-radius: 8px; padding: 7px 9px; font-size: 12px; max-width: 300px; display: none; }
.lr-tip .tn { font-weight: 600; font-size: 12.5px; margin-bottom: 2px; }
.lr-tip .tm { color: var(--lr-muted); }
.lr-tip .tt { margin-top: 4px; }
.lr .trust { display: inline-flex; align-items: center; gap: 5px; font-size: 12px; font-weight: 600; }
.lr .trust.src { color: var(--lr-ok); }
.lr .trust.no { color: var(--lr-muted); }
.lr .trust .dotg { width: 10px; height: 10px; border-radius: 50%; display: inline-block; flex: none; }
.lr .trust.src .dotg { background: var(--lr-ok); border: 2px solid var(--lr-ok); }
.lr .trust.no .dotg { background: transparent; border: 1.6px solid var(--lr-derived); }
.lr-panel { width: 290px; flex: none; border-left: 1px solid var(--lr-line); padding: 14px 16px 18px; overflow: auto; }
.lr-panel h3 { margin: 3px 0 2px; font-size: 16px; line-height: 1.3; word-break: break-word; }
.lr-panel .kick, .lr-panel .lbl { font-size: 11px; text-transform: uppercase; letter-spacing: .06em; color: var(--lr-muted); font-weight: 700; }
.lr-panel .lbl { margin: 14px 0 6px; }
.lr-panel .meta { font-size: 12.5px; color: var(--lr-muted); }
.lr-panel .tdef { font-size: 12.5px; color: var(--lr-muted); margin: 4px 0 0; }
.lr-panel .key { margin: 0 0 6px; font-size: 13px; }
.lr-panel dl.types { margin: 0; }
.lr-panel .types dt { font-size: 12.5px; font-weight: 600; margin-top: 8px; }
.lr-panel .types dd { font-size: 12.5px; color: var(--lr-muted); margin: 1px 0 0; }
.lr-panel dl.kv { margin: 6px 0 0; display: grid; grid-template-columns: 80px 1fr; gap: 4px 8px; font-size: 12.5px; }
.lr-panel dl.kv dt { color: var(--lr-muted); }
.lr-panel dl.kv dd { margin: 0; word-break: break-word; min-width: 0; }
.lr-panel .sfull { font-size: 13px; font-weight: 600; }
.lr-panel .stmt { font-size: 13px; margin-top: 3px; }
.lr-panel .rec { font-size: 11.5px; color: var(--lr-muted); margin-top: 3px; word-break: break-word; }
.lr-panel .srcs { display: flex; gap: 10px; flex-wrap: wrap; margin-top: 8px; }
.lr-panel .acts { display: flex; gap: 8px; margin-top: 16px; flex-wrap: wrap; }
.lr-panel .note { font-size: 12.5px; color: var(--lr-muted); margin: 8px 0 0; }
.lr-panel .note:empty { display: none; }
.lr-panel .hops { list-style: none; margin: 0; padding: 0; }
.lr-panel .hops li { display: grid; grid-template-columns: 18px 1fr; column-gap: 8px; align-items: center; font-size: 12.5px; }
.lr-panel .hops .hn { padding: 2px 0; }
.lr-panel .hops .hg { line-height: 0; }
.lr-panel .sharebar { display: block; max-width: 100%; }
.lr-panel .meta.share { margin: 6px 0; }
.lr-panel .lbl.first { margin-top: 0; }
.lr-panel .hops .hl { grid-column: 2; color: var(--lr-muted); font-size: 12px; padding: 3px 0 4px; display: flex; gap: 6px; align-items: center; flex-wrap: wrap; }
.lr-panel .hops .ln { grid-column: 1; justify-self: center; width: 0; height: 100%; min-height: 22px; border-left: 2px solid var(--lr-ok); }
.lr-panel .hops .ln.no { border-left: 2px dashed var(--lr-derived); }
.lr-card { margin-top: 14px; border: 1px solid var(--lr-line); border-radius: 6px; padding: 8px 10px; }
.lr-cardhead { display: flex; align-items: center; justify-content: space-between; }
.lr-cardhead .lbl { margin: 0; }
.lr .aigen { position: relative; font-size: 11px; color: var(--lr-muted); border: 1px dashed var(--lr-muted); border-radius: 3px; padding: 0 5px; cursor: help; }
.lr .aigen:hover::after, .lr .aigen:focus::after { content: attr(data-tip); position: absolute; right: 0; top: calc(100% + 6px); width: 230px; z-index: 6;
background: var(--lr-surface); color: var(--lr-ink); border: 1px solid var(--lr-line); box-shadow: 0 4px 16px rgba(20,28,37,.1); border-radius: 6px; padding: 6px 8px; font-size: 12px; line-height: 1.4; }
.lr-close { display: none; }
.lr.lr-stacked .lr-body { display: block; }
/* scroll-margin keeps a scrolled-to panel clear of the detail page's sticky top bar */
.lr.lr-stacked .lr-panel { width: auto; border-left: 0; border-top: 1px solid var(--lr-line); scroll-margin-top: 64px; }
.lr.lr-stacked .lr-pbody { max-width: 760px; }
/* In the detail page the panel takes the page's full width. */
.detail-body .lr { margin-left: -14px; margin-right: -14px; }
@media (max-width: 720px) {
.lr-body { display: block; }
.lr-legend { margin-left: 0; }
.lr-panel { position: fixed; left: 0; right: 0; bottom: 0; width: auto; max-height: 62vh; border-left: 0; border-top: 1px solid var(--lr-line); background: var(--lr-surface);
box-shadow: 0 -6px 24px rgba(0,0,0,.18); border-radius: 12px 12px 0 0; z-index: 20; transform: translateY(105%); transition: transform .2s; }
.lr-panel.open { transform: none; }
.lr-close { display: block; position: absolute; right: 10px; top: 8px; }
}
@media (prefers-reduced-motion: reduce) { .lr-panel { transition: none; } .lr .e { transition: none; } .lr-node.enter, .lr .e.enter { animation: none; } }
/* Label search: three groups, Relevant open first, Not relevant closed. */
.label-group { margin: 0 0 18px; }
.label-head { cursor: pointer; font-weight: 600; font-size: 15px; padding: 6px 0 10px; color: var(--text); }
.label-relevant > .label-head { color: var(--ok); }
.label-not_relevant > .label-head { color: var(--muted); }
.unit-row td { background: #f6f8fa; font-weight: 500; }
.unit-facts { display: block; font-size: 12px; font-weight: 400; color: #6b7885; margin-top: 2px; }