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Bidirectional Transformer decoder inspired by CUT3R.
"""
import torch
import torch.nn as nn
import torch.nn.functional as F
from flash_attn import flash_attn_func
from typing import Optional, Tuple, List
import math
import os
import sys
import logging
from pathlib import Path
logger = logging.getLogger(__name__)
from src.models.physformer_rope import PhysFormerRoPE, apply_rotary_emb
class RMSNorm(nn.Module):
"""
Root Mean Square Layer Normalization (RMSNorm).
More efficient than LayerNorm, used in modern transformers like LLaMA.
Reference: Zhang and Sennrich 2019 - "Root Mean Square Layer Normalization"
"""
def __init__(self, dim: int, eps: float = 1e-6):
super().__init__()
self.eps = eps
self.weight = nn.Parameter(torch.ones(dim))
def forward(self, x: torch.Tensor) -> torch.Tensor:
# RMS normalization: x / RMS(x) * weight
# RMS(x) = sqrt(mean(x^2) + eps)
rms = torch.sqrt(torch.mean(x ** 2, dim=-1, keepdim=True) + self.eps)
x_normed = x / rms
return self.weight * x_normed
def get_norm_layer(norm_type: str, dim: int) -> nn.Module:
"""
Factory function to create normalization layer.
Args:
norm_type: 'layer_norm' or 'rms_norm'
dim: Dimension to normalize
Returns:
Normalization module
"""
if norm_type == 'rms_norm':
return RMSNorm(dim)
elif norm_type == 'layer_norm':
return nn.LayerNorm(dim)
else:
raise ValueError(f"Unknown norm_type: {norm_type}. Choose 'layer_norm' or 'rms_norm'.")
class BidirectionalDecoder(nn.Module):
"""
Bidirectional decoder following CUT3R's architecture.
- Returns all layer outputs for multi-scale fusion
- Bidirectional cross-attention between state and object tokens
- RMSNorm and QK-normalization for training stability (configurable)
- Optional elementwise gated attention (Qwen3 style)
"""
def __init__(
self,
state_dim: int = 768,
num_layers: int = 12,
num_heads: int = 12,
feedforward_dim: int = None, # None: 2.5x state_dim (SwiGLU)
dropout: float = 0.1,
activation: str = 'swiglu',
return_all_layers: bool = True, # For multi-scale fusion
use_learnable_pe: bool = False,
use_rope: bool = True,
max_state_tokens: int = 1024,
max_obs_tokens: int = 256,
use_self_attention: bool = False, # Optional state self-attention
norm_type: str = 'rms_norm', # 'layer_norm' or 'rms_norm'
qk_norm: bool = True, # QK-normalization for training stability
num_register_tokens: int = 16, # Learnable register tokens (RenderFormer)
center_rope_positions: bool = False, # Subtract the valid-object anchor centroid before RoPE (registers sit at the centroid)
rope_set_aggregation: bool = False, # Set aggregation for multi-point RoPE
rope_dim: int = None, # Custom RoPE dimension (None = auto-compute as head_dim//6*6)
dim_per_coord_3d: int = None, # Dim per coordinate for single-point (3D) RoPE
dim_per_coord_multi: int = None, # Dim per coordinate for multi-point RoPE
layer_indices_to_save: set = None, # Save only these layer outputs to reduce memory
elementwise_gate: bool = False, # Elementwise gated attention (Qwen3 style)
state_update_enabled: bool = True, # False: state is fixed learnable embeddings
objects_self_attention: bool = False, # Objects self-attention for object-object interaction
use_se3: bool = False, # SE(3) pairwise bias for object self-attention
# Block Attention Residuals (Kimi 2026, arXiv:2603.15031)
block_attn_res: bool = False, # Enable Block AttnRes for inter-layer residuals
block_attn_res_block_size: int = 4, # Layers per block (S in the paper)
block_attn_res_final_aggregate: bool = False, # Return the final depth aggregation as the last layer's features
film_conditioning: bool = False, # Per-layer FiLM conditioning on step size
):
super().__init__()
self.state_dim = state_dim
self.num_layers = num_layers
self.return_all_layers = return_all_layers
# Optionally save only selected layer outputs to reduce memory
if layer_indices_to_save is not None:
for idx in layer_indices_to_save:
assert 0 <= idx <= num_layers, \
f"Invalid layer index {idx} to save. Valid range: [0, {num_layers}]"
self.layer_indices_to_save = layer_indices_to_save
else:
# Default: save all layers if return_all_layers is True
self.layer_indices_to_save = set(range(num_layers + 1)) if return_all_layers else set()
self.use_rope = bool(use_rope)
self.rope_set_aggregation = rope_set_aggregation
# If RoPE is enabled, disable learnable positional embeddings in decoder inputs
self.use_learnable_pe = bool(use_learnable_pe and (not self.use_rope))
assert self.use_rope, "RoPE must be enabled for decoder"
if feedforward_dim is None:
feedforward_dim = int(2.5 * state_dim)
# Register tokens (RenderFormer): learnable tokens that provide scratch
# space for global information and reduce embedding noise.
self.num_register_tokens = num_register_tokens
self.center_rope_positions = bool(center_rope_positions)
if num_register_tokens > 0:
self.register_tokens = nn.Parameter(torch.randn(1, num_register_tokens, state_dim) * 0.02)
# Register positions are created in forward() to match the dimensionality
# of obj_anchor_pos (3D single-point or Nq*3 D multi-point RoPE).
else:
self.register_tokens = None
# Transformer decoder layers
self.state_update_enabled = state_update_enabled
self.objects_self_attention = objects_self_attention
if not state_update_enabled:
print(f"[Decoder] State update disabled: state acts as learnable embeddings (objects attend to state only)")
if objects_self_attention:
print(f"[Decoder] Objects self-attention enabled: direct object-to-object interaction")
self.layers = nn.ModuleList([
TransformerDecoderLayer(
state_dim,
num_heads,
feedforward_dim,
dropout,
activation,
use_self_attention=use_self_attention,
use_rope=self.use_rope,
norm_type=norm_type,
qk_norm=qk_norm,
rope_set_aggregation=self.rope_set_aggregation,
rope_dim=rope_dim,
dim_per_coord_3d=dim_per_coord_3d,
dim_per_coord_multi=dim_per_coord_multi,
elementwise_gate=elementwise_gate,
state_update_enabled=state_update_enabled,
objects_self_attention=objects_self_attention,
use_se3=use_se3,
film_conditioning=film_conditioning
) for _ in range(num_layers)
])
# Final layer normalization
self.state_norm = get_norm_layer(norm_type, state_dim)
self.obs_norm = get_norm_layer(norm_type, state_dim)
# Block Attention Residuals (Kimi 2026, arXiv:2603.15031)
# Replaces standard inter-layer residuals with softmax attention over block representations
# h_l = sum_i alpha_{i->l} * v_i (attention over depth) instead of h_l = h_{l-1} + f_l(h_{l-1})
self.block_attn_res = block_attn_res
self.block_attn_res_block_size = block_attn_res_block_size
# With return_all_layers the last returned features are the last layer's own output;
# block_attn_res_final_aggregate returns the final depth aggregation instead (off by default).
self.block_attn_res_final_aggregate = bool(block_attn_res_final_aggregate)
if self.block_attn_res_final_aggregate and not block_attn_res:
raise ValueError('block_attn_res_final_aggregate requires block_attn_res')
if self.block_attn_res_final_aggregate:
print("[Decoder] Block AttnRes final aggregation returned as the last layer's features")
if block_attn_res:
N_blocks = max(1, num_layers // block_attn_res_block_size)
print(f"[Decoder] Block AttnRes enabled: {num_layers} layers, block_size={block_attn_res_block_size}, N_blocks={N_blocks}")
# Per-layer pseudo-query w_l (d-dimensional learnable vector) for depth attention
self.attn_res_queries = nn.ParameterList([
nn.Parameter(torch.zeros(state_dim)) for _ in range(num_layers)
])
# Shared RMSNorm for keys in depth attention (prevents magnitude bias)
self.attn_res_key_norm = RMSNorm(state_dim)
def forward(
self,
state: Optional[torch.Tensor],
obj_features: torch.Tensor,
state_pos: Optional[torch.Tensor] = None,
obj_anchor_pos: Optional[torch.Tensor] = None,
mask: Optional[torch.Tensor] = None,
se3_bias: Optional[torch.Tensor] = None, # (B, H, Nobj, Nobj) pairwise SE(3) bias
time_features: Optional[torch.Tensor] = None # (B, 2) [s, s^2] for per-layer FiLM
) -> Tuple[List[torch.Tensor], List[torch.Tensor]]:
"""
Process state and per-object features through bidirectional interaction.
Register tokens (RenderFormer) are prepended to object features.
When state=None (no_global_state mode):
- Skips all state cross-attention
- Runs objects self-attention + objects FFN only
- Returns dummy state entries
Args:
state: State tokens (B, N_state, D) or None for no-state mode
obj_features: Per-object encoder features (B, N_obj, D)
state_pos: State positions for RoPE (B, N_state, 3) or None
obj_anchor_pos: Object anchor positions for multi-point RoPE (B, N_obj, Nq*3)
mask: Optional attention mask
time_features: (B, 2) [s, s^2] for per-layer FiLM conditioning
Returns:
If return_all_layers: (all_state_layers, all_obj_layers)
Else: (final_state, final_obj_features)
Register tokens are stripped from obj_features before returning.
"""
no_state = state is None
# Store selected layer outputs for memory efficiency
all_states = [] if self.return_all_layers else None
all_obj_features = [] if self.return_all_layers else None
# Rope-only: expect explicit obj_anchor_pos; state_pos only needed when state is used
if obj_anchor_pos is None:
raise ValueError("decoder.forward expects obj_anchor_pos for rope-only mode")
if not no_state and state_pos is None:
raise ValueError("decoder.forward expects state_pos when state is provided")
if self.center_rope_positions:
# Rotary angles of register tokens are zero, so register<->object attention would otherwise
# depend on absolute object positions. Expressing every position relative to the centroid of
# the valid objects' anchors makes the whole decoder exactly translation invariant.
Bc, Nc, Pc = obj_anchor_pos.shape
pos = obj_anchor_pos.view(Bc, Nc, Pc // 3, 3)
if mask is not None:
valid = (mask.reshape(Bc, -1)[:, -Nc:] == 0).to(pos.dtype) # (B, Nobj): additive mask 0 = valid
else:
valid = torch.ones(Bc, Nc, dtype=pos.dtype, device=pos.device)
w = valid.view(Bc, Nc, 1, 1)
centroid = (pos * w).sum(dim=(1, 2)) / (w.sum(dim=(1, 2)) * pos.shape[2]).clamp_min(1.0) # (B, 3)
obj_anchor_pos = (pos - centroid.view(Bc, 1, 1, 3)).reshape(Bc, Nc, Pc)
if not getattr(self, '_center_logged', False):
self._center_logged = True
print(f"[Decoder] RoPE positions centred at the valid-object anchor centroid ACTIVE "
f"(|centroid| max={centroid.abs().max().item():.2f} m; registers at the centroid)", flush=True)
# Prepend register tokens to object features (RenderFormer)
if self.num_register_tokens > 0:
B = obj_features.shape[0]
register_tokens_expanded = self.register_tokens.expand(B, -1, -1) # (B, N_reg, D)
obj_features_with_reg = torch.cat([register_tokens_expanded, obj_features], dim=1)
# Register positions match the dimensionality of obj_anchor_pos (3 or Nq*3)
pos_dim = obj_anchor_pos.shape[-1] # Either 3 or Nq*3
register_positions = torch.zeros(B, self.num_register_tokens, pos_dim,
device=obj_anchor_pos.device, dtype=obj_anchor_pos.dtype)
obj_anchor_pos_with_reg = torch.cat([register_positions, obj_anchor_pos], dim=1)
# Extend mask to cover register tokens (always valid)
if mask is not None:
# mask: (B, 1, 1, Nobj) SDPA additive -> (B, 1, 1, Nreg+Nobj);
# register entries are 0.0 (attend normally)
register_mask = torch.zeros(B, 1, 1, self.num_register_tokens,
device=mask.device, dtype=mask.dtype)
mask_with_reg = torch.cat([register_mask, mask], dim=-1)
else:
mask_with_reg = None
# Extend SE(3) bias to include register tokens (zero bias = attend freely)
if se3_bias is not None and self.num_register_tokens > 0:
N_reg = self.num_register_tokens
N_obj = se3_bias.shape[-1] # original Nobj
H = se3_bias.shape[1]
# Pad: (B, H, Nobj, Nobj) -> (B, H, Nreg+Nobj, Nreg+Nobj)
# Register tokens have zero bias (vanilla attention)
se3_bias = F.pad(se3_bias, (N_reg, 0, N_reg, 0), value=0.0)
else:
obj_features_with_reg = obj_features
obj_anchor_pos_with_reg = obj_anchor_pos
mask_with_reg = mask
# Process through each layer with register tokens
state_current = state
obj_current = obj_features_with_reg
# Create a dummy state placeholder for no-state mode (used in returned lists)
if no_state:
B = obj_features.shape[0]
_dummy_state = torch.zeros(B, 1, self.state_dim, device=obj_features.device, dtype=obj_features.dtype)
# Add initial layer (layer 0) if needed
if self.return_all_layers and 0 in self.layer_indices_to_save:
all_states.append(_dummy_state if no_state else state)
all_obj_features.append(obj_features) # Store original without register tokens
# Block Attention Residuals path
if self.block_attn_res:
# Block AttnRes (Kimi 2026): replace inter-layer residuals with
# softmax attention over completed block sums + partial block sum
S = self.block_attn_res_block_size
completed_blocks = [obj_current] # b_0 = initial obj features (embedding)
partial_block = None # Running intra-block sum
layer_in_block = 0
for layer_idx, layer in enumerate(self.layers):
# Block boundary: commit partial sum
if layer_in_block == S:
completed_blocks.append(partial_block)
partial_block = None
layer_in_block = 0
# Compute input via depth attention over block representations
obj_current = self._block_attn_res_aggregate(
completed_blocks, partial_block, self.attn_res_queries[layer_idx]
)
# Run layer (layer uses internal residuals for sublayers)
state_current, obj_output = layer(
state_current, obj_current,
state_pos, obj_anchor_pos_with_reg,
mask_with_reg,
se3_bias=se3_bias,
time_features=time_features
)
# Compute layer delta: f_l(h_l) = output - input
# The layer output includes internal residuals, so
# delta = obj_output - obj_current is the "function output" for AttnRes
layer_delta = obj_output - obj_current
# Accumulate delta into partial block sum
partial_block = layer_delta if partial_block is None else partial_block + layer_delta
layer_in_block += 1
# Save layer outputs if needed
if self.return_all_layers and (layer_idx + 1) in self.layer_indices_to_save:
# For output, use the full obj_output (input + delta)
if self.num_register_tokens > 0:
obj_out_no_reg = obj_output[:, self.num_register_tokens:, :]
else:
obj_out_no_reg = obj_output
all_states.append(_dummy_state if no_state else state_current)
all_obj_features.append(obj_out_no_reg)
# Final aggregation: attend over all blocks (including last partial)
if partial_block is not None:
completed_blocks.append(partial_block)
# Reuse the last layer's query for the final aggregation
obj_current = self._block_attn_res_aggregate(
completed_blocks, None, self.attn_res_queries[-1]
)
if self.return_all_layers and self.block_attn_res_final_aggregate:
if self.num_layers not in self.layer_indices_to_save:
raise ValueError('block_attn_res_final_aggregate needs the last layer among the saved layers')
all_obj_features[-1] = (obj_current[:, self.num_register_tokens:, :] if self.num_register_tokens > 0
else obj_current)
else:
# Standard residual path
for layer_idx, layer in enumerate(self.layers):
state_current, obj_current = layer(
state_current, obj_current,
state_pos, obj_anchor_pos_with_reg,
mask_with_reg,
se3_bias=se3_bias,
time_features=time_features
)
if self.return_all_layers and (layer_idx + 1) in self.layer_indices_to_save:
if self.num_register_tokens > 0:
obj_current_no_reg = obj_current[:, self.num_register_tokens:, :]
else:
obj_current_no_reg = obj_current
all_states.append(_dummy_state if no_state else state_current)
all_obj_features.append(obj_current_no_reg)
# Apply final normalization
if self.return_all_layers:
if not no_state:
all_states[-1] = self.state_norm(all_states[-1])
all_obj_features[-1] = self.obs_norm(all_obj_features[-1])
return all_states, all_obj_features
else:
if self.num_register_tokens > 0:
obj_current_no_reg = obj_current[:, self.num_register_tokens:, :]
else:
obj_current_no_reg = obj_current
state_final = self.state_norm(state_current) if not no_state else _dummy_state
obj_final = self.obs_norm(obj_current_no_reg)
return state_final, obj_final
def _block_attn_res_aggregate(
self,
completed_blocks: list,
partial_block: Optional[torch.Tensor],
w_l: nn.Parameter,
) -> torch.Tensor:
"""
Block AttnRes aggregation (Eq. 6 from Kimi 2026).
Computes softmax attention over completed block representations + optional
partial block sum, using per-layer pseudo-query w_l.
phi(q, k) = exp(q^T RMSNorm(k))
alpha_{i->l} = phi(w_l, k_i) / sum_j phi(w_l, k_j)
h_l = sum_i alpha_{i->l} * v_i
Args:
completed_blocks: List of block representations [b_0, b_1, ...]
partial_block: Current intra-block partial sum (None if at block boundary)
w_l: Learnable pseudo-query vector (d,)
Returns:
Aggregated input for next layer (B, N_tokens, D)
"""
if partial_block is not None:
sources = completed_blocks + [partial_block]
else:
sources = completed_blocks
# Stack: (num_sources, B, N_tokens, D)
V = torch.stack(sources, dim=0)
# RMSNorm on keys prevents magnitude bias between complete blocks and partial sums
K = self.attn_res_key_norm(V)
# Compute attention logits: w_l^T RMSNorm(k_i) for each source
# w_l: (D,), K: (num_sources, B, N_tokens, D) -> logits: (num_sources, B, N_tokens)
logits = torch.einsum('d, n b t d -> n b t', w_l, K)
alpha = logits.softmax(dim=0)
# Weighted sum: (num_sources, B, N_tokens) x (num_sources, B, N_tokens, D) -> (B, N_tokens, D)
return torch.einsum('n b t, n b t d -> b t d', alpha, V)
class TransformerDecoderLayer(nn.Module):
"""
Single decoder layer of bidirectional cross-attention, following CUT3R and
RenderFormer (RMSNorm, QK-normalization, optional gated attention).
When state_update_enabled=False:
- State is treated as fixed learnable embeddings (never updated)
- Only the Objects <- State cross-attention runs
- State self-attention and State <- Objects are skipped, saving roughly
half the computation
When objects_self_attention=True:
- Objects self-attention runs before Objects <- State, enabling direct
object-to-object interaction
"""
def __init__(
self,
d_model: int,
num_heads: int,
feedforward_dim: int,
dropout: float = 0.1,
activation: str = 'swiglu',
use_self_attention: bool = False,
drop_path_prob: float = 0.1,
use_rope: bool = True,
norm_type: str = 'rms_norm', # 'layer_norm' or 'rms_norm'
qk_norm: bool = True,
rope_set_aggregation: bool = False, # Set aggregation for multi-point RoPE
rope_dim: int = None, # Custom RoPE dimension
dim_per_coord_3d: int = None, # Dim per coordinate for single-point (3D) RoPE
dim_per_coord_multi: int = None, # Dim per coordinate for multi-point RoPE
elementwise_gate: bool = False, # Elementwise gated attention (Qwen3 style)
state_update_enabled: bool = True, # False: state is fixed learnable embeddings
objects_self_attention: bool = False, # Objects self-attention for object-object interaction
use_se3: bool = False, # SE(3) pairwise bias replaces RoPE in object self-attention
film_conditioning: bool = False # Per-layer FiLM conditioning on step size
):
super().__init__()
self.use_self_attention = use_self_attention
self.use_rope = bool(use_rope)
self.state_update_enabled = state_update_enabled
self.objects_self_attention = objects_self_attention
self._objects_self_attention_logged = False # One-time log flag
# Cross-attention with optional RoPE and QK-normalization
self.state_cross_attn = CrossAttentionWithRoPE(
d_model=d_model,
num_heads=num_heads,
dropout=dropout,
use_rope=self.use_rope,
qk_norm=qk_norm,
rope_set_aggregation=rope_set_aggregation,
rope_dim=rope_dim,
dim_per_coord_3d=dim_per_coord_3d,
dim_per_coord_multi=dim_per_coord_multi,
elementwise_gate=elementwise_gate
)
self.obs_cross_attn = CrossAttentionWithRoPE(
d_model=d_model,
num_heads=num_heads,
dropout=dropout,
use_rope=self.use_rope,
qk_norm=qk_norm,
rope_set_aggregation=rope_set_aggregation,
rope_dim=rope_dim,
dim_per_coord_3d=dim_per_coord_3d,
dim_per_coord_multi=dim_per_coord_multi,
elementwise_gate=elementwise_gate
)
# Optional state self-attention (disabled by default)
if use_self_attention:
self.state_self_attention = SelfAttentionWithRoPE(
d_model=d_model,
num_heads=num_heads,
dropout=dropout,
use_rope=self.use_rope,
qk_norm=qk_norm,
rope_set_aggregation=rope_set_aggregation,
rope_dim=rope_dim,
dim_per_coord_3d=dim_per_coord_3d,
dim_per_coord_multi=dim_per_coord_multi,
elementwise_gate=elementwise_gate
)
self.state_norm0 = get_norm_layer(norm_type, d_model) # Norm for state self-attention
# Objects self-attention for object-to-object interaction. Spatial encoding
# uses multi-point RoPE over anchor positions, or an SE(3) pairwise bias
# when use_se3=True.
if objects_self_attention:
if use_se3:
from src.models.se3_attention import SelfAttentionWithSE3Bias
self.obj_self_attn = SelfAttentionWithSE3Bias(
d_model=d_model,
num_heads=num_heads,
dropout=dropout,
qk_norm=qk_norm,
elementwise_gate=elementwise_gate
)
logger.info(f"[Decoder Init] obj_self_attn = SelfAttentionWithSE3Bias (no RoPE, pairwise bias)")
else:
self.obj_self_attn = SelfAttentionWithRoPE(
d_model=d_model,
num_heads=num_heads,
dropout=dropout,
use_rope=self.use_rope,
qk_norm=qk_norm,
rope_set_aggregation=rope_set_aggregation,
rope_dim=rope_dim,
dim_per_coord_3d=dim_per_coord_3d,
dim_per_coord_multi=dim_per_coord_multi,
elementwise_gate=elementwise_gate
)
self.obj_norm0 = get_norm_layer(norm_type, d_model) # Norm for objects self-attention
# Feedforward networks
self.state_ffn = FeedForward(d_model, feedforward_dim, dropout, activation)
self.obs_ffn = FeedForward(d_model, feedforward_dim, dropout, activation)
# Layer normalization (pre-norm)
self.state_norm1 = get_norm_layer(norm_type, d_model)
self.state_norm2 = get_norm_layer(norm_type, d_model)
self.obs_norm1 = get_norm_layer(norm_type, d_model)
self.obs_norm2 = get_norm_layer(norm_type, d_model)
# Per-layer FiLM conditioning on step size
self.layer_film = None
if film_conditioning:
from src.models.encoder import StepSizeFiLM
self.layer_film = StepSizeFiLM(time_dim=2, feature_dim=d_model)
# Dropout
self.dropout = nn.Dropout(dropout)
self.drop_path = DropPath(drop_path_prob) if drop_path_prob and drop_path_prob > 0.0 else nn.Identity()
def forward(
self,
state: torch.Tensor,
obj_features: torch.Tensor,
state_pos: Optional[torch.Tensor] = None,
obj_anchor_pos: Optional[torch.Tensor] = None,
mask: Optional[torch.Tensor] = None,
se3_bias: Optional[torch.Tensor] = None, # (B, H, Nobj, Nobj) pairwise SE(3) bias
time_features: Optional[torch.Tensor] = None # (B, 2) [s, s^2] for per-layer FiLM
) -> tuple:
"""
Bidirectional or unidirectional cross-attention.
When state_update_enabled=True (default):
- Full bidirectional interaction: state and objects attend to each other
- Optional state self-attention
- Both state and objects are updated
When state_update_enabled=False:
- Unidirectional: Objects <- State only
- State remains fixed learnable embeddings
Args:
state: State tokens (B, N_state, D)
obj_features: Per-object encoder features (B, N_obj, D)
state_pos: State 3D positions for RoPE (B, N_state, 3)
obj_anchor_pos: Object anchor positions for RoPE (B, N_obj, Nq*3)
mask: Optional attention mask
Returns:
Updated state and obj_features
"""
no_state = state is None
if self.state_update_enabled and not no_state:
# Full bidirectional mode
# Optional state self-attention with RoPE. The object mask does not
# apply to state tokens; pass None.
if self.use_self_attention:
state_sa = self.state_norm0(state)
state_sa = self.state_self_attention(
query=state_sa,
key_value=state_sa,
pos_q=state_pos, # Use 3D grid positions for RoPE
pos_k=state_pos,
attn_mask=None # Object mask does not apply to state tokens
)
state = state + self.drop_path(self.dropout(state_sa))
# Bidirectional cross-attention
# State <- Objects: state queries per-object features
state_normed = self.state_norm1(state)
obj_normed = self.obs_norm1(obj_features)
state2 = self.state_cross_attn(
query=state_normed,
key_value=obj_normed,
pos_q=state_pos,
pos_k=obj_anchor_pos,
attn_mask=mask
)
state = state + self.drop_path(self.dropout(state2))
# Objects <- State: per-object features query state
obj2 = self.obs_cross_attn(
query=obj_normed,
key_value=state_normed,
pos_q=obj_anchor_pos,
pos_k=state_pos,
attn_mask=None # State keys are all valid, no need to mask
)
obj_features = obj_features + self.drop_path(self.dropout(obj2))
# Per-layer FiLM conditioning on step size
if self.layer_film is not None and time_features is not None:
obj_features = self.layer_film(obj_features, time_features)
# Feedforward networks with residual connections
state = state + self.drop_path(self.state_ffn(self.state_norm2(state)))
obj_features = obj_features + self.drop_path(self.obs_ffn(self.obs_norm2(obj_features)))
else:
# Unidirectional / no-state mode
# no_state=True: objects self-attention + objects FFN only
# no_state=False: objects self-attention + Objects <- State + objects FFN
# Objects self-attention runs before Objects <- State so objects
# exchange information first
if self.objects_self_attention:
# One-time runtime confirmation log
if not self._objects_self_attention_logged:
mode_str = 'NO-STATE' if no_state else 'UNIDIRECTIONAL'
print(f"[Decoder Runtime] Objects self-attention active ({mode_str}): shape={obj_features.shape}, se3_bias={'yes' if se3_bias is not None else 'no'}")
self._objects_self_attention_logged = True
obj_sa = self.obj_norm0(obj_features)
if se3_bias is not None:
# SE(3) path: use pairwise bias instead of RoPE
obj_sa = self.obj_self_attn(
query=obj_sa,
key_value=obj_sa,
se3_bias=se3_bias,
attn_mask=mask
)
else:
# ARoPE/OBB/PCA path: use RoPE with anchor positions
obj_sa = self.obj_self_attn(
query=obj_sa,
key_value=obj_sa,
pos_q=obj_anchor_pos, # Multi-point anchor positions for RoPE
pos_k=obj_anchor_pos,
attn_mask=mask # Mask padding objects
)
obj_features = obj_features + self.drop_path(self.dropout(obj_sa))
# Objects <- State cross-attention (skipped when no_state=True)
if not no_state:
state_normed = self.state_norm1(state)
obj_normed = self.obs_norm1(obj_features)
# Objects <- State: per-object features query state (learnable context)
obj2 = self.obs_cross_attn(
query=obj_normed,
key_value=state_normed,
pos_q=obj_anchor_pos,
pos_k=state_pos,
attn_mask=None # State keys are all valid, no need to mask
)
obj_features = obj_features + self.drop_path(self.dropout(obj2))
# Per-layer FiLM conditioning on step size
# Applied after attention, before the FFN. Padding objects may receive
# non-zero features from the FiLM beta bias; the SDPA -inf mask keeps
# valid objects from attending to them.
if self.layer_film is not None and time_features is not None:
obj_features = self.layer_film(obj_features, time_features)
# Objects FFN
obj_features = obj_features + self.drop_path(self.obs_ffn(self.obs_norm2(obj_features)))
return state, obj_features
class SelfAttentionWithRoPE(nn.Module):
"""
Self-attention that applies RoPE using 3D positions.
QK-normalization (RenderFormer) improves training stability; elementwise
gated attention (Qwen3) adds non-linearity and sparsity.
"""
def __init__(
self,
d_model: int,
num_heads: int,
dropout: float = 0.1,
use_rope: bool = True,
qk_norm: bool = True, # QK-normalization (RenderFormer)
rope_set_aggregation: bool = False,
rope_dim: int = None, # Custom RoPE dimension (None = auto-compute)
dim_per_coord_3d: int = None, # Dim per coordinate for single-point (3D) RoPE
dim_per_coord_multi: int = None, # Dim per coordinate for multi-point RoPE
elementwise_gate: bool = False # Elementwise gated attention (Qwen3 style)
):
super().__init__()
assert d_model % num_heads == 0, "d_model must be divisible by num_heads"
self.d_model = d_model
self.num_heads = num_heads
self.head_dim = d_model // num_heads
self.scale = self.head_dim ** -0.5
self.use_rope = bool(use_rope)
self.qk_norm = qk_norm
self.elementwise_gate = elementwise_gate
# Projections; with elementwise_gate, q_proj outputs 2x dims (Q and gate scores)
if self.elementwise_gate:
self.q_proj = nn.Linear(d_model, d_model * 2, bias=True)
else:
self.q_proj = nn.Linear(d_model, d_model, bias=True)
self.k_proj = nn.Linear(d_model, d_model, bias=True)
self.v_proj = nn.Linear(d_model, d_model, bias=True)
self.out_proj = nn.Linear(d_model, d_model, bias=True)
self.dropout = nn.Dropout(dropout)
self._attn_dispatch_logged = False # One-time attention dispatch log
# QK-normalization: per-head RMSNorm (RenderFormer)
if self.qk_norm:
self.q_norm = RMSNorm(self.head_dim)
self.k_norm = RMSNorm(self.head_dim)
# 3D rotary embedding; only the first rope_dim dims are rotated
if rope_dim is None:
# Auto-compute: multiple of 6, capped at head_dim
self.rope_dim = max(6, (self.head_dim // 6) * 6)
self.rope_dim = min(self.rope_dim, self.head_dim)
else:
# Custom rope_dim (must be a multiple of 6 for 3D RoPE)
assert rope_dim % 6 == 0, f"rope_dim must be multiple of 6 for 3D RoPE, got {rope_dim}"
assert rope_dim <= self.head_dim, f"rope_dim {rope_dim} exceeds head_dim {self.head_dim}"
self.rope_dim = rope_dim
self.rope3d = PhysFormerRoPE(
dim=self.rope_dim,
max_freq=10.0,
use_3d=True,
learnable_freqs=False,
use_set_aggregation=rope_set_aggregation,
dim_per_coord_3d=dim_per_coord_3d, # Pass to PhysFormerRoPE
dim_per_coord_multi=dim_per_coord_multi # Pass to PhysFormerRoPE
)
def _reshape_to_heads(self, x: torch.Tensor) -> torch.Tensor:
B, N, D = x.shape
x = x.view(B, N, self.num_heads, self.head_dim).permute(0, 2, 1, 3) # (B,H,N,Hd)
return x
def _merge_heads(self, x: torch.Tensor) -> torch.Tensor:
B, H, N, Hd = x.shape
return x.permute(0, 2, 1, 3).contiguous().view(B, N, H * Hd)
def forward(
self,
query: torch.Tensor,
key_value: torch.Tensor,
pos_q: torch.Tensor,
pos_k: torch.Tensor,
attn_mask: Optional[torch.Tensor] = None
) -> torch.Tensor:
"""
Self-attention using Flash Attention, or SDPA when a mask is provided.
Args:
query: Input tokens (B, N, D)
key_value: Same as query for self-attention (B, N, D)
pos_q: 3D positions (B, N, 3) or multi-point positions (B, N, Nq*3)
pos_k: Same as pos_q for self-attention
attn_mask: Optional additive mask; when present, attention runs
through SDPA since Flash does not support masks
Returns:
Output tokens (B, N, D)
"""
B, N, _ = query.shape
# Q projection with optional elementwise gate
if self.elementwise_gate:
q_gate = self.q_proj(query) # (B, N, d_model * 2)
q_states, gate_score = torch.split(q_gate, self.d_model, dim=-1)
q = q_states.view(B, N, self.num_heads, self.head_dim) # (B, N, H, D) - Flash expects (B, S, H, D)
gate_score = gate_score.view(B, N, self.num_heads, self.head_dim) # (B, N, H, D)
else:
q = self.q_proj(query).view(B, N, self.num_heads, self.head_dim) # (B, N, H, D)
gate_score = None
k = self.k_proj(key_value).view(B, N, self.num_heads, self.head_dim) # (B, N, H, D)
v = self.v_proj(key_value).view(B, N, self.num_heads, self.head_dim) # (B, N, H, D)
# QK-normalization (RenderFormer)
if self.qk_norm:
# RMSNorm normalizes the last (per-head) dimension
q = self.q_norm(q)
k = self.k_norm(k)
# RoPE (single-point 3D or multi-point)
if pos_q is None or pos_k is None:
raise ValueError("SelfAttentionWithRoPE expects pos_q and pos_k")
# Single-point (3D) vs multi-point positions
if pos_q.shape[-1] == 3:
rope_q = self.rope3d.forward_3d(pos_q) # (B, N, rope_dim)
else:
rope_q = self.rope3d.forward_sa_rope(pos_q) # SA-RoPE: symmetric anchor pooling
if pos_k is pos_q:
rope_k = rope_q # identical positions -> identical angles (computed once)
elif pos_k.shape[-1] == 3:
rope_k = self.rope3d.forward_3d(pos_k) # (B, N, rope_dim)
else:
rope_k = self.rope3d.forward_sa_rope(pos_k) # SA-RoPE: symmetric anchor pooling
# The angles stay at (B, 1, N, rope_dim) and broadcast over heads inside apply_rotary_emb. cos/sin
# are elementwise, so this equals expanding to (B, H, N, rope_dim) first, at 1/num_heads of the work.
rope_q_T = rope_q.unsqueeze(1)
rope_k_T = rope_k.unsqueeze(1) if rope_k is not rope_q else rope_q_T
# Apply rotation
q_rot = q[..., :self.rope_dim]
k_rot = k[..., :self.rope_dim]
q_pass = q[..., self.rope_dim:]
k_pass = k[..., self.rope_dim:]
# apply_rotary_emb operates on (B, H, N, D): transpose for the rotation,
# then transpose back to the (B, N, H, D) layout Flash expects.
q_rot = q_rot.transpose(1, 2) # (B, H, N, D)
k_rot = k_rot.transpose(1, 2)
q_rot = apply_rotary_emb(rope_q_T, q_rot)
k_rot = apply_rotary_emb(rope_k_T, k_rot)
# Permute back to (B, N, H, D)
q_rot = q_rot.transpose(1, 2)
k_rot = k_rot.transpose(1, 2)
q = torch.cat([q_rot, q_pass], dim=-1)
k = torch.cat([k_rot, k_pass], dim=-1)
# flash_attn_func does not support additive masks: dispatch to SDPA when a
# mask is provided, Flash Attention otherwise.
if attn_mask is not None:
if not self._attn_dispatch_logged:
print(f"[SelfAttentionWithRoPE] SDPA path (mask active): Q={q.shape}, K={k.shape}, mask={attn_mask.shape}, "
f"mask_min={attn_mask.min().item():.0f}, n_masked={(attn_mask == float('-inf')).sum().item()}")
self._attn_dispatch_logged = True
# SDPA expects (B, H, N, D) layout
q_sdpa = q.transpose(1, 2) # (B, H, N, D)
k_sdpa = k.transpose(1, 2)
v_sdpa = v.transpose(1, 2)
out = F.scaled_dot_product_attention(
q_sdpa, k_sdpa, v_sdpa,
attn_mask=attn_mask,
dropout_p=self.dropout.p if self.training else 0.0,
scale=self.scale
) # (B, H, N, D)
out = out.transpose(1, 2) # Back to (B, N, H, D)
else:
if not self._attn_dispatch_logged:
print(f"[SelfAttentionWithRoPE] Flash path (no mask): Q={q.shape}")
self._attn_dispatch_logged = True
# Flash Attention runs in bf16/fp16; the output is cast back to the
# original dtype immediately.
original_dtype = query.dtype
attn_dtype = torch.bfloat16 if torch.cuda.is_bf16_supported() else torch.float16
q_half = q.to(attn_dtype)
k_half = k.to(attn_dtype)
v_half = v.to(attn_dtype)
out = flash_attn_func(q_half, k_half, v_half, dropout_p=self.dropout.p if self.training else 0.0, softmax_scale=self.scale)
out = out.to(original_dtype)
if self.elementwise_gate:
out = out * torch.sigmoid(gate_score)
# Merge heads: (B, N, H, D) -> (B, N, H*D)
out = out.reshape(B, N, self.num_heads * self.head_dim)
out = self.out_proj(out)
return out
class CrossAttentionWithRoPE(nn.Module):
"""
Cross-attention that applies RoPE to queries and keys.
QK-normalization (RenderFormer) improves training stability; elementwise
gated attention (Qwen3) adds non-linearity and sparsity.
"""
def __init__(
self,
d_model: int,
num_heads: int,
dropout: float = 0.1,
use_rope: bool = True,
qk_norm: bool = True, # QK-normalization (RenderFormer)
rope_set_aggregation: bool = False,
rope_dim: int = None, # Custom RoPE dimension (None = auto-compute)
dim_per_coord_3d: int = None, # Dim per coordinate for single-point (3D) RoPE
dim_per_coord_multi: int = None, # Dim per coordinate for multi-point RoPE
elementwise_gate: bool = False # Elementwise gated attention (Qwen3 style)
):
super().__init__()
assert d_model % num_heads == 0, "d_model must be divisible by num_heads"
self.d_model = d_model
self.num_heads = num_heads
self.head_dim = d_model // num_heads
self.scale = self.head_dim ** -0.5
self.use_rope = bool(use_rope)
self.qk_norm = qk_norm
self.elementwise_gate = elementwise_gate
# Projections; with elementwise_gate, q_proj outputs 2x dims (Q and gate scores)
if self.elementwise_gate:
self.q_proj = nn.Linear(d_model, d_model * 2, bias=True)
else:
self.q_proj = nn.Linear(d_model, d_model, bias=True)
self.k_proj = nn.Linear(d_model, d_model, bias=True)
self.v_proj = nn.Linear(d_model, d_model, bias=True)
self.out_proj = nn.Linear(d_model, d_model, bias=True)
self.dropout = nn.Dropout(dropout)
self._attn_dispatch_logged = False # One-time attention dispatch log
# QK-normalization: per-head RMSNorm (RenderFormer)
if self.qk_norm:
self.q_norm = RMSNorm(self.head_dim)
self.k_norm = RMSNorm(self.head_dim)
# 3D rotary embedding; only the first rope_dim dims are rotated
if rope_dim is None:
# Auto-compute: multiple of 6, capped at head_dim
self.rope_dim = max(6, (self.head_dim // 6) * 6)
self.rope_dim = min(self.rope_dim, self.head_dim)
else:
# Custom rope_dim (must be a multiple of 6 for 3D RoPE)
assert rope_dim % 6 == 0, f"rope_dim must be multiple of 6 for 3D RoPE, got {rope_dim}"
assert rope_dim <= self.head_dim, f"rope_dim {rope_dim} exceeds head_dim {self.head_dim}"
self.rope_dim = rope_dim
self.rope3d = PhysFormerRoPE(
dim=self.rope_dim,
max_freq=10.0,
use_3d=True,
learnable_freqs=False,
use_set_aggregation=rope_set_aggregation,
dim_per_coord_3d=dim_per_coord_3d, # Pass to PhysFormerRoPE
dim_per_coord_multi=dim_per_coord_multi # Pass to PhysFormerRoPE
)
def _reshape_to_heads(self, x: torch.Tensor) -> torch.Tensor:
B, N, D = x.shape
x = x.view(B, N, self.num_heads, self.head_dim).permute(0, 2, 1, 3) # (B,H,N,Hd)
return x
def _merge_heads(self, x: torch.Tensor) -> torch.Tensor:
B, H, N, Hd = x.shape
return x.permute(0, 2, 1, 3).contiguous().view(B, N, H * Hd)
def forward(
self,
query: torch.Tensor,
key_value: torch.Tensor,
pos_q: torch.Tensor,
pos_k: torch.Tensor,
attn_mask: Optional[torch.Tensor] = None
) -> torch.Tensor:
"""
Cross-attention using Flash Attention v2.
"""
B, Nq, _ = query.shape
_, Nk, _ = key_value.shape
# Projections => (B, N, H, D) for Flash
if self.elementwise_gate:
q_gate = self.q_proj(query)
q_states, gate_score = torch.split(q_gate, self.d_model, dim=-1)
q = q_states.view(B, Nq, self.num_heads, self.head_dim)
gate_score = gate_score.view(B, Nq, self.num_heads, self.head_dim)
else:
q = self.q_proj(query).view(B, Nq, self.num_heads, self.head_dim)
gate_score = None
k = self.k_proj(key_value).view(B, Nk, self.num_heads, self.head_dim)
v = self.v_proj(key_value).view(B, Nk, self.num_heads, self.head_dim)
# QK Norm
if self.qk_norm:
q = self.q_norm(q)
k = self.k_norm(k)
# RoPE
if pos_q is None or pos_k is None:
raise ValueError("CrossAttentionWithRoPE expects pos_q and pos_k")
# Single-point (3D) vs multi-point positions
if pos_q.shape[-1] == 3:
rope_q = self.rope3d.forward_3d(pos_q)
else:
rope_q = self.rope3d.forward_sa_rope(pos_q) # SA-RoPE: symmetric anchor pooling
if pos_k is pos_q:
rope_k = rope_q # identical positions -> identical angles (computed once)
elif pos_k.shape[-1] == 3:
rope_k = self.rope3d.forward_3d(pos_k)
else:
rope_k = self.rope3d.forward_sa_rope(pos_k) # SA-RoPE: symmetric anchor pooling
# (B, 1, N, rope_dim) angles broadcast over heads (see SelfAttentionWithRoPE)
rope_q_T = rope_q.unsqueeze(1)
rope_k_T = rope_k.unsqueeze(1) if rope_k is not rope_q else rope_q_T
# apply_rotary_emb operates on (B, H, N, D): transpose for the rotation and back
q_rot = q[..., :self.rope_dim].transpose(1, 2)
k_rot = k[..., :self.rope_dim].transpose(1, 2)
q_rot = apply_rotary_emb(rope_q_T, q_rot)
k_rot = apply_rotary_emb(rope_k_T, k_rot)
q_rot = q_rot.transpose(1, 2)
k_rot = k_rot.transpose(1, 2)
q_pass = q[..., self.rope_dim:]
k_pass = k[..., self.rope_dim:]
q = torch.cat([q_rot, q_pass], dim=-1)
k = torch.cat([k_rot, k_pass], dim=-1)
# flash_attn_func does not support additive masks: dispatch to SDPA when a
# mask is provided, Flash Attention otherwise.
if attn_mask is not None:
if not self._attn_dispatch_logged:
n_inf = (attn_mask == float('-inf')).sum().item()
n_total = attn_mask.numel()
print(f"[CrossAttentionWithRoPE] SDPA path (mask active): Q={q.shape}, K={k.shape}, "
f"mask={attn_mask.shape}, masked={n_inf}/{n_total} ({100*n_inf/max(n_total,1):.1f}%)")
self._attn_dispatch_logged = True
# SDPA expects (B, H, N, D) layout
q_sdpa = q.transpose(1, 2) # (B, H, Nq, D)
k_sdpa = k.transpose(1, 2) # (B, H, Nk, D)
v_sdpa = v.transpose(1, 2) # (B, H, Nk, D)
out = F.scaled_dot_product_attention(
q_sdpa, k_sdpa, v_sdpa,
attn_mask=attn_mask,
dropout_p=self.dropout.p if self.training else 0.0,
scale=self.scale
) # (B, H, Nq, D)
out = out.transpose(1, 2) # Back to (B, Nq, H, D)
else:
if not self._attn_dispatch_logged:
print(f"[CrossAttentionWithRoPE] Flash path (no mask): Q={q.shape}, K={k.shape}")
self._attn_dispatch_logged = True
# Flash Attention runs in bf16/fp16; the output is cast back to the
# original dtype immediately.
original_dtype = query.dtype
attn_dtype = torch.bfloat16 if torch.cuda.is_bf16_supported() else torch.float16
q_half = q.to(attn_dtype)
k_half = k.to(attn_dtype)
v_half = v.to(attn_dtype)
out = flash_attn_func(q_half, k_half, v_half, dropout_p=self.dropout.p if self.training else 0.0, softmax_scale=self.scale)
out = out.to(original_dtype)
if self.elementwise_gate:
out = out * torch.sigmoid(gate_score)
out = out.reshape(B, Nq, self.num_heads * self.head_dim)
out = self.out_proj(out)
return out
class FeedForward(nn.Module):
"""Feedforward network with activation and dropout.
Supports GELU/RELU and SwiGLU (default). For SwiGLU, hidden_dim is the inner dimension.
"""
def __init__(
self,
d_model: int,
hidden_dim: int,
dropout: float = 0.1,
activation: str = 'swiglu'
):
super().__init__()
self.activation_name = activation
self.dropout = nn.Dropout(dropout)
if activation == 'swiglu':
self.fc1 = nn.Linear(d_model, hidden_dim)
self.fc1_gate = nn.Linear(d_model, hidden_dim)
self.fc2 = nn.Linear(hidden_dim, d_model)
else:
self.fc1 = nn.Linear(d_model, hidden_dim)
self.fc2 = nn.Linear(hidden_dim, d_model)
if activation == 'gelu':
self.act = nn.GELU()
elif activation == 'relu':
self.act = nn.ReLU()
elif activation == 'silu':
self.act = nn.SiLU()
else:
raise ValueError(f"Unknown activation: {activation}")
def forward(self, x):
if self.activation_name == 'swiglu':
a = self.fc1(x)
b = torch.nn.functional.silu(self.fc1_gate(x))
y = a * b
y = self.dropout(y)
y = self.fc2(y)
y = self.dropout(y)
return y
else:
y = self.fc1(x)
y = self.act(y)
y = self.dropout(y)
y = self.fc2(y)
y = self.dropout(y)
return y
class DropPath(nn.Module):
"""Stochastic Depth per sample (DropPath).
"""
def __init__(self, drop_prob: float = 0.0):
super().__init__()
self.drop_prob = drop_prob
def forward(self, x: torch.Tensor) -> torch.Tensor:
if self.drop_prob == 0.0 or not self.training:
return x
keep_prob = 1 - self.drop_prob
shape = (x.shape[0],) + (1,) * (x.ndim - 1)
random_tensor = keep_prob + torch.rand(shape, dtype=x.dtype, device=x.device)
random_tensor.floor_()
return x.div(keep_prob) * random_tensor
if __name__ == "__main__":
"""Test the decoder module."""
print("Testing BidirectionalDecoder...")
decoder = BidirectionalDecoder(
state_dim=512,
num_layers=4,
num_heads=8,
feedforward_dim=2048
)
# Create dummy inputs
batch_size = 2
state = torch.randn(batch_size, 256, 512) # 256 state tokens
observation = torch.randn(batch_size, 10, 512) # 10 observation tokens
# Forward pass
output = decoder(state, observation)
print(f"Output shape: {output.shape}") # Should be (2, 10, 512)
print("\nDecoder test successful!")
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