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Upload 5 files
Browse files- DEPLOYMENT_GUIDE.md +132 -0
- app.py +595 -0
- best.pt +3 -0
- model.pkl +3 -0
- requirements.txt +7 -0
DEPLOYMENT_GUIDE.md
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# 🚀 DEPLOYMENT GUIDE
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## Deploy to Hugging Face Spaces (FREE)
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### Step 1: Create Hugging Face Account
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1. Go to https://huggingface.co
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2. Sign up (free)
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3. Verify email
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### Step 2: Create New Space
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1. Click your profile → "New Space"
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2. Settings:
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- **Name:** `anemia-screening` (or your choice)
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- **License:** MIT
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- **SDK:** Gradio
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- **Hardware:** CPU Basic (free) — upgrade to GPU if slow
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- **Visibility:** Public (or Private)
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3. Click "Create Space"
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### Step 3: Upload Files
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Upload these files to your Space:
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```
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your-space/
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├── app.py # Main application (provided)
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├── requirements.txt # Dependencies (provided)
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├── README.md # Space config (provided)
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├── model.pkl # YOUR trained model from Colab
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└── best.pt # YOUR YOLO weights
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```
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**Option A: Via Web Interface**
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- Click "Files" tab → "Add file" → Upload each file
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**Option B: Via Git**
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```bash
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git clone https://huggingface.co/spaces/YOUR_USERNAME/anemia-screening
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cd anemia-screening
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# Copy your files here
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git add .
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git commit -m "Initial deployment"
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git push
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```
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### Step 4: Wait for Build
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- Space will automatically install dependencies and start
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- Takes 2-5 minutes
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- Check "Logs" tab if errors occur
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### Step 5: Test
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- Once running, test with a sample image
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- Share the URL with others
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---
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## Files You Need from Colab
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After Colab finishes, download from your GDrive `outputs/` folder:
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| File | What it is |
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|------|------------|
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| `model.pkl` | Trained ML model |
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You already have:
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| File | What it is |
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|------|------------|
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| `best.pt` | YOLO segmentation weights |
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---
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## Common Issues
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### "Model not found"
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- Ensure `model.pkl` and `best.pt` are in the root of your Space (not in a subfolder)
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### "Out of memory"
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- Upgrade to GPU hardware (still free tier available)
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- Or reduce image size in `app.py`
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### "Module not found"
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- Check `requirements.txt` has all dependencies
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- Restart the Space
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### YOLO errors
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- Ensure `best.pt` is a segmentation model (not detection-only)
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- Check ultralytics version compatibility
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---
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## Custom Domain (Optional)
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Hugging Face provides URL like:
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`https://huggingface.co/spaces/YOUR_USERNAME/anemia-screening`
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For custom domain (e.g., `anemia.yourdomain.com`):
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1. Go to Space Settings
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2. Add custom domain
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3. Configure DNS CNAME record
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---
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## Data Collection
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Collected data saves to `collected_data.csv` in the Space.
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To download:
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1. Go to "Files" tab
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2. Click `collected_data.csv`
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3. Download
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For production, connect to Google Sheets or a database instead.
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---
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## Updating the Model
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When you retrain with more data:
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1. Download new `model.pkl` from Colab
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2. Upload to Space (replace old file)
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3. Space auto-restarts
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---
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## Cost
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| Tier | Cost | Specs |
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|------|------|-------|
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| CPU Basic | FREE | 2 vCPU, 16GB RAM |
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| CPU Upgrade | $0.03/hr | 8 vCPU, 32GB RAM |
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| GPU T4 | $0.40/hr | Good for heavy YOLO usage |
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For most use cases, **FREE tier is sufficient**.
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app.py
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|
| 1 |
+
"""
|
| 2 |
+
NON-INVASIVE ANEMIA SCREENING WEBAPP
|
| 3 |
+
=====================================
|
| 4 |
+
Estimates hemoglobin from palpebral conjunctiva image + standardized form inputs.
|
| 5 |
+
|
| 6 |
+
Deploy on Hugging Face Spaces (free).
|
| 7 |
+
Collects anonymized data for model improvement.
|
| 8 |
+
|
| 9 |
+
Author: JIPMER Anemia Screening Study
|
| 10 |
+
"""
|
| 11 |
+
|
| 12 |
+
import gradio as gr
|
| 13 |
+
import numpy as np
|
| 14 |
+
import pandas as pd
|
| 15 |
+
import pickle
|
| 16 |
+
import cv2
|
| 17 |
+
import uuid
|
| 18 |
+
from datetime import datetime
|
| 19 |
+
from pathlib import Path
|
| 20 |
+
|
| 21 |
+
# ============================================================
|
| 22 |
+
# CONFIGURATION
|
| 23 |
+
# ============================================================
|
| 24 |
+
MODEL_PATH = "model.pkl"
|
| 25 |
+
YOLO_PATH = "best.pt"
|
| 26 |
+
DATA_LOG_PATH = "collected_data.csv" # Local fallback; use Google Sheets in production
|
| 27 |
+
|
| 28 |
+
# ============================================================
|
| 29 |
+
# LOAD MODELS (done once at startup)
|
| 30 |
+
# ============================================================
|
| 31 |
+
def load_models():
|
| 32 |
+
"""Load ML model and YOLO segmentation model."""
|
| 33 |
+
global ml_model, feature_names, yolo_model
|
| 34 |
+
|
| 35 |
+
# Load ML model
|
| 36 |
+
with open(MODEL_PATH, 'rb') as f:
|
| 37 |
+
model_data = pickle.load(f)
|
| 38 |
+
ml_model = model_data['model']
|
| 39 |
+
feature_names = model_data['features']
|
| 40 |
+
print(f"✅ Loaded ML model: {model_data.get('name', 'Unknown')}")
|
| 41 |
+
print(f" Features: {len(feature_names)}")
|
| 42 |
+
|
| 43 |
+
# Load YOLO
|
| 44 |
+
from ultralytics import YOLO
|
| 45 |
+
yolo_model = YOLO(YOLO_PATH)
|
| 46 |
+
print(f"✅ Loaded YOLO model")
|
| 47 |
+
|
| 48 |
+
return True
|
| 49 |
+
|
| 50 |
+
# ============================================================
|
| 51 |
+
# IMAGE PROCESSING
|
| 52 |
+
# ============================================================
|
| 53 |
+
def calibrate_image(img):
|
| 54 |
+
"""White balance calibration using grey card."""
|
| 55 |
+
try:
|
| 56 |
+
if img is None:
|
| 57 |
+
return None
|
| 58 |
+
|
| 59 |
+
# Convert to RGB if needed
|
| 60 |
+
if len(img.shape) == 2:
|
| 61 |
+
img_rgb = cv2.cvtColor(img, cv2.COLOR_GRAY2RGB)
|
| 62 |
+
elif img.shape[2] == 4:
|
| 63 |
+
img_rgb = cv2.cvtColor(img, cv2.COLOR_RGBA2RGB)
|
| 64 |
+
else:
|
| 65 |
+
img_rgb = img.copy()
|
| 66 |
+
|
| 67 |
+
gray = cv2.cvtColor(img_rgb, cv2.COLOR_RGB2GRAY)
|
| 68 |
+
_, thresh = cv2.threshold(gray, 180, 255, cv2.THRESH_BINARY)
|
| 69 |
+
contours, _ = cv2.findContours(thresh, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE)
|
| 70 |
+
|
| 71 |
+
if not contours:
|
| 72 |
+
_, thresh = cv2.threshold(gray, 150, 255, cv2.THRESH_BINARY)
|
| 73 |
+
contours, _ = cv2.findContours(thresh, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE)
|
| 74 |
+
|
| 75 |
+
if not contours:
|
| 76 |
+
return img_rgb
|
| 77 |
+
|
| 78 |
+
c = max(contours, key=cv2.contourArea)
|
| 79 |
+
x, y, w, h = cv2.boundingRect(c)
|
| 80 |
+
|
| 81 |
+
if w * h < 1000:
|
| 82 |
+
return img_rgb
|
| 83 |
+
|
| 84 |
+
patch = img_rgb[y+h//4:y+3*h//4, x+w//4:x+3*w//4]
|
| 85 |
+
if patch.size == 0:
|
| 86 |
+
return img_rgb
|
| 87 |
+
|
| 88 |
+
avg = np.mean(patch, axis=(0, 1))
|
| 89 |
+
if any(v < 10 for v in avg):
|
| 90 |
+
return img_rgb
|
| 91 |
+
|
| 92 |
+
scale = np.array([128, 128, 128]) / avg
|
| 93 |
+
return np.clip(img_rgb * scale, 0, 255).astype(np.uint8)
|
| 94 |
+
except Exception as e:
|
| 95 |
+
print(f"Calibration error: {e}")
|
| 96 |
+
return img
|
| 97 |
+
|
| 98 |
+
|
| 99 |
+
def extract_image_features(img):
|
| 100 |
+
"""Run YOLO segmentation and extract color features."""
|
| 101 |
+
try:
|
| 102 |
+
# Calibrate
|
| 103 |
+
img_cal = calibrate_image(img)
|
| 104 |
+
if img_cal is None:
|
| 105 |
+
return None
|
| 106 |
+
|
| 107 |
+
# YOLO segmentation
|
| 108 |
+
results = yolo_model(img_cal, verbose=False)
|
| 109 |
+
|
| 110 |
+
if len(results) > 0 and results[0].masks is not None:
|
| 111 |
+
masks = results[0].masks.data.cpu().numpy()
|
| 112 |
+
confs = results[0].boxes.conf.cpu().numpy()
|
| 113 |
+
if len(confs) > 0:
|
| 114 |
+
m = masks[np.argmax(confs)]
|
| 115 |
+
m = cv2.resize(m, (img_cal.shape[1], img_cal.shape[0]))
|
| 116 |
+
roi_mask = (m > 0.5).astype(np.uint8) * 255
|
| 117 |
+
else:
|
| 118 |
+
# Fallback to center crop
|
| 119 |
+
h, w = img_cal.shape[:2]
|
| 120 |
+
roi_mask = np.zeros((h, w), dtype=np.uint8)
|
| 121 |
+
roi_mask[h//4:3*h//4, w//4:3*w//4] = 255
|
| 122 |
+
else:
|
| 123 |
+
h, w = img_cal.shape[:2]
|
| 124 |
+
roi_mask = np.zeros((h, w), dtype=np.uint8)
|
| 125 |
+
roi_mask[h//4:3*h//4, w//4:3*w//4] = 255
|
| 126 |
+
|
| 127 |
+
# Extract color features from ROI
|
| 128 |
+
px = img_cal[roi_mask > 0]
|
| 129 |
+
if len(px) == 0:
|
| 130 |
+
return None
|
| 131 |
+
|
| 132 |
+
R, G, B = [np.mean(px[:, i]) for i in range(3)]
|
| 133 |
+
|
| 134 |
+
hsv = cv2.cvtColor(img_cal, cv2.COLOR_RGB2HSV)
|
| 135 |
+
hpx = hsv[roi_mask > 0]
|
| 136 |
+
H, S, V = [np.mean(hpx[:, i]) for i in range(3)]
|
| 137 |
+
|
| 138 |
+
lab = cv2.cvtColor(img_cal, cv2.COLOR_RGB2LAB)
|
| 139 |
+
lpx = lab[roi_mask > 0]
|
| 140 |
+
L, A, Bc = [np.mean(lpx[:, i]) for i in range(3)]
|
| 141 |
+
|
| 142 |
+
return {
|
| 143 |
+
'R': R, 'G': G, 'B': B,
|
| 144 |
+
'H': H, 'S': S, 'V': V,
|
| 145 |
+
'L_color': L, 'A_color': A, 'B_color': Bc
|
| 146 |
+
}
|
| 147 |
+
except Exception as e:
|
| 148 |
+
print(f"Image processing error: {e}")
|
| 149 |
+
return None
|
| 150 |
+
|
| 151 |
+
|
| 152 |
+
# ============================================================
|
| 153 |
+
# FORM INPUT → FEATURE VECTOR MAPPING
|
| 154 |
+
# ============================================================
|
| 155 |
+
def form_to_features(
|
| 156 |
+
age, income_range, family_size, diet,
|
| 157 |
+
food_grains, food_leafy, food_cereals, food_pulses,
|
| 158 |
+
food_fish, food_eggs, food_meat, food_jaggery, food_nuts,
|
| 159 |
+
fruit_freq, veg_freq, tea_coffee,
|
| 160 |
+
comorb_dm, comorb_htn, comorb_thyroid,
|
| 161 |
+
prev_anemia, family_anemia, hookworm, bleeding_disorder, deworming,
|
| 162 |
+
menstrual, pads_per_day,
|
| 163 |
+
gravida, para, live_births, abortions, stillbirths,
|
| 164 |
+
family_dm, family_htn
|
| 165 |
+
):
|
| 166 |
+
"""Convert standardized form inputs to feature vector."""
|
| 167 |
+
|
| 168 |
+
# Income mapping
|
| 169 |
+
income_map = {
|
| 170 |
+
"Below ₹5,000": 2500,
|
| 171 |
+
"₹5,000 - ₹10,000": 7500,
|
| 172 |
+
"₹10,000 - ₹15,000": 12500,
|
| 173 |
+
"₹15,000 - ₹25,000": 20000,
|
| 174 |
+
"₹25,000 - ₹50,000": 37500,
|
| 175 |
+
"Above ₹50,000": 75000
|
| 176 |
+
}
|
| 177 |
+
income = income_map.get(income_range, 20000)
|
| 178 |
+
income_per_capita = income / max(family_size, 1)
|
| 179 |
+
|
| 180 |
+
# Diet one-hot
|
| 181 |
+
diet_veg = 1 if diet == "Vegetarian" else 0
|
| 182 |
+
diet_nonveg = 1 if diet == "Non-vegetarian" else 0
|
| 183 |
+
diet_mixed = 1 if diet == "Mixed" else 0
|
| 184 |
+
|
| 185 |
+
# Iron foods
|
| 186 |
+
food_iron_count = sum([food_grains, food_leafy, food_cereals, food_pulses,
|
| 187 |
+
food_fish, food_eggs, food_meat, food_jaggery, food_nuts])
|
| 188 |
+
|
| 189 |
+
# Frequency mapping
|
| 190 |
+
freq_map = {"Daily": 4, "Twice a week": 3, "Once a week": 2, "Rarely": 1, "Never": 0}
|
| 191 |
+
fruit_freq_val = freq_map.get(fruit_freq, 2)
|
| 192 |
+
veg_freq_val = freq_map.get(veg_freq, 2)
|
| 193 |
+
|
| 194 |
+
# Binary mappings
|
| 195 |
+
tea_coffee_val = 1 if tea_coffee == "Yes" else 0
|
| 196 |
+
comorb_dm_val = 1 if comorb_dm else 0
|
| 197 |
+
comorb_htn_val = 1 if comorb_htn else 0
|
| 198 |
+
comorb_thyroid_val = 1 if comorb_thyroid else 0
|
| 199 |
+
comorb_none = 1 if not any([comorb_dm, comorb_htn, comorb_thyroid]) else 0
|
| 200 |
+
comorb_count = comorb_dm_val + comorb_htn_val + comorb_thyroid_val
|
| 201 |
+
|
| 202 |
+
prev_anemia_val = 1 if prev_anemia == "Yes" else 0
|
| 203 |
+
family_anemia_val = 1 if family_anemia == "Yes" else 0
|
| 204 |
+
hookworm_val = 1 if hookworm == "Yes" else 0
|
| 205 |
+
bleeding_val = 1 if bleeding_disorder == "Yes" else 0
|
| 206 |
+
deworming_val = 1 if deworming == "Yes" else 0
|
| 207 |
+
|
| 208 |
+
# Menstrual
|
| 209 |
+
menstrual_regular = 1 if menstrual == "Regular" else 0
|
| 210 |
+
menstrual_irregular = 1 if menstrual == "Irregular" else 0
|
| 211 |
+
|
| 212 |
+
# Pads mapping
|
| 213 |
+
pads_map = {"1-2": 1.5, "2-3": 2.5, "3-4": 3.5, "4-5": 4.5, "More than 5": 6, "Not applicable": 2.5}
|
| 214 |
+
pads_val = pads_map.get(pads_per_day, 2.5)
|
| 215 |
+
|
| 216 |
+
# Obstetric
|
| 217 |
+
has_obstetric = 1 if gravida > 0 else 0
|
| 218 |
+
pregnancy_loss = abortions + stillbirths
|
| 219 |
+
parity_ratio = para / gravida if gravida > 0 else 0
|
| 220 |
+
|
| 221 |
+
family_dm_val = 1 if family_dm == "Yes" else 0
|
| 222 |
+
family_htn_val = 1 if family_htn == "Yes" else 0
|
| 223 |
+
|
| 224 |
+
# Build feature dict (order must match training!)
|
| 225 |
+
features = {
|
| 226 |
+
'age': age,
|
| 227 |
+
'income': income,
|
| 228 |
+
'family_size': family_size,
|
| 229 |
+
'income_per_capita': income_per_capita,
|
| 230 |
+
'diet_veg': diet_veg,
|
| 231 |
+
'diet_nonveg': diet_nonveg,
|
| 232 |
+
'diet_mixed': diet_mixed,
|
| 233 |
+
'food_whole_grains': 1 if food_grains else 0,
|
| 234 |
+
'food_green_leafy_vegetables': 1 if food_leafy else 0,
|
| 235 |
+
'food_cereals': 1 if food_cereals else 0,
|
| 236 |
+
'food_pulses': 1 if food_pulses else 0,
|
| 237 |
+
'food_fish': 1 if food_fish else 0,
|
| 238 |
+
'food_eggs': 1 if food_eggs else 0,
|
| 239 |
+
'food_meat': 1 if food_meat else 0,
|
| 240 |
+
'food_jaggery': 1 if food_jaggery else 0,
|
| 241 |
+
'food_nuts': 1 if food_nuts else 0,
|
| 242 |
+
'food_iron_count': food_iron_count,
|
| 243 |
+
'fruit_freq': fruit_freq_val,
|
| 244 |
+
'veg_freq': veg_freq_val,
|
| 245 |
+
'tea_coffee_daily': tea_coffee_val,
|
| 246 |
+
'tea_coffee_daily_missing': 0,
|
| 247 |
+
'comorb_dm': comorb_dm_val,
|
| 248 |
+
'comorb_htn': comorb_htn_val,
|
| 249 |
+
'comorb_thyroid': comorb_thyroid_val,
|
| 250 |
+
'comorb_none': comorb_none,
|
| 251 |
+
'comorb_count': comorb_count,
|
| 252 |
+
'prev_anemia': prev_anemia_val,
|
| 253 |
+
'prev_anemia_missing': 0,
|
| 254 |
+
'family_anemia': family_anemia_val,
|
| 255 |
+
'family_anemia_missing': 0,
|
| 256 |
+
'hookworm_history': hookworm_val,
|
| 257 |
+
'hookworm_history_missing': 0,
|
| 258 |
+
'bleeding_disorder': bleeding_val,
|
| 259 |
+
'bleeding_disorder_missing': 0,
|
| 260 |
+
'deworming_done': deworming_val,
|
| 261 |
+
'deworming_done_missing': 0,
|
| 262 |
+
'menstrual_regular': menstrual_regular,
|
| 263 |
+
'menstrual_irregular': menstrual_irregular,
|
| 264 |
+
'pads_per_day': pads_val,
|
| 265 |
+
'pads_missing': 0,
|
| 266 |
+
'gravida': gravida,
|
| 267 |
+
'para': para,
|
| 268 |
+
'live_births': live_births,
|
| 269 |
+
'abortions': abortions,
|
| 270 |
+
'stillbirths': stillbirths,
|
| 271 |
+
'has_obstetric_history': has_obstetric,
|
| 272 |
+
'pregnancy_loss': pregnancy_loss,
|
| 273 |
+
'parity_ratio': parity_ratio,
|
| 274 |
+
'family_dm': family_dm_val,
|
| 275 |
+
'family_dm_missing': 0,
|
| 276 |
+
'family_htn': family_htn_val,
|
| 277 |
+
'family_htn_missing': 0,
|
| 278 |
+
}
|
| 279 |
+
|
| 280 |
+
return features
|
| 281 |
+
|
| 282 |
+
|
| 283 |
+
# ============================================================
|
| 284 |
+
# DATA LOGGING
|
| 285 |
+
# ============================================================
|
| 286 |
+
def log_data(session_id, features, image_features, predicted_hb, actual_hb=None):
|
| 287 |
+
"""Log anonymized data for model improvement."""
|
| 288 |
+
try:
|
| 289 |
+
record = {
|
| 290 |
+
'session_id': session_id,
|
| 291 |
+
'timestamp': datetime.now().isoformat(),
|
| 292 |
+
'predicted_hb': predicted_hb,
|
| 293 |
+
'actual_hb': actual_hb,
|
| 294 |
+
**features,
|
| 295 |
+
**image_features
|
| 296 |
+
}
|
| 297 |
+
|
| 298 |
+
df = pd.DataFrame([record])
|
| 299 |
+
|
| 300 |
+
# Append to CSV (or send to Google Sheets in production)
|
| 301 |
+
if Path(DATA_LOG_PATH).exists():
|
| 302 |
+
df.to_csv(DATA_LOG_PATH, mode='a', header=False, index=False)
|
| 303 |
+
else:
|
| 304 |
+
df.to_csv(DATA_LOG_PATH, index=False)
|
| 305 |
+
|
| 306 |
+
return True
|
| 307 |
+
except Exception as e:
|
| 308 |
+
print(f"Logging error: {e}")
|
| 309 |
+
return False
|
| 310 |
+
|
| 311 |
+
|
| 312 |
+
# ============================================================
|
| 313 |
+
# MAIN PREDICTION FUNCTION
|
| 314 |
+
# ============================================================
|
| 315 |
+
def predict_hb(
|
| 316 |
+
image,
|
| 317 |
+
age, income_range, family_size, diet,
|
| 318 |
+
food_grains, food_leafy, food_cereals, food_pulses,
|
| 319 |
+
food_fish, food_eggs, food_meat, food_jaggery, food_nuts,
|
| 320 |
+
fruit_freq, veg_freq, tea_coffee,
|
| 321 |
+
comorb_dm, comorb_htn, comorb_thyroid,
|
| 322 |
+
prev_anemia, family_anemia, hookworm, bleeding_disorder, deworming,
|
| 323 |
+
menstrual, pads_per_day,
|
| 324 |
+
gravida, para, live_births, abortions, stillbirths,
|
| 325 |
+
family_dm, family_htn,
|
| 326 |
+
actual_hb_input
|
| 327 |
+
):
|
| 328 |
+
"""Main prediction function."""
|
| 329 |
+
|
| 330 |
+
# Generate session ID
|
| 331 |
+
session_id = str(uuid.uuid4())[:8]
|
| 332 |
+
|
| 333 |
+
# Validate image
|
| 334 |
+
if image is None:
|
| 335 |
+
return "❌ Please upload an image of the palpebral conjunctiva with color card.", "", ""
|
| 336 |
+
|
| 337 |
+
# Extract image features
|
| 338 |
+
image_features = extract_image_features(image)
|
| 339 |
+
if image_features is None:
|
| 340 |
+
return "❌ Could not process image. Please ensure the palpebral conjunctiva is clearly visible.", "", ""
|
| 341 |
+
|
| 342 |
+
# Convert form to features
|
| 343 |
+
tabular_features = form_to_features(
|
| 344 |
+
age, income_range, family_size, diet,
|
| 345 |
+
food_grains, food_leafy, food_cereals, food_pulses,
|
| 346 |
+
food_fish, food_eggs, food_meat, food_jaggery, food_nuts,
|
| 347 |
+
fruit_freq, veg_freq, tea_coffee,
|
| 348 |
+
comorb_dm, comorb_htn, comorb_thyroid,
|
| 349 |
+
prev_anemia, family_anemia, hookworm, bleeding_disorder, deworming,
|
| 350 |
+
menstrual, pads_per_day,
|
| 351 |
+
gravida, para, live_births, abortions, stillbirths,
|
| 352 |
+
family_dm, family_htn
|
| 353 |
+
)
|
| 354 |
+
|
| 355 |
+
# Combine features
|
| 356 |
+
all_features = {**tabular_features, **image_features}
|
| 357 |
+
|
| 358 |
+
# Create feature vector in correct order
|
| 359 |
+
X = pd.DataFrame([all_features])[feature_names]
|
| 360 |
+
|
| 361 |
+
# Predict
|
| 362 |
+
hb_pred = ml_model.predict(X)[0]
|
| 363 |
+
hb_pred = round(float(hb_pred), 1)
|
| 364 |
+
|
| 365 |
+
# Classify severity
|
| 366 |
+
if hb_pred >= 12:
|
| 367 |
+
severity = "Normal"
|
| 368 |
+
color = "🟢"
|
| 369 |
+
recommendation = "No signs of anemia detected. Maintain a balanced diet."
|
| 370 |
+
elif hb_pred >= 11:
|
| 371 |
+
severity = "Mild Anemia"
|
| 372 |
+
color = "🟡"
|
| 373 |
+
recommendation = "Mild anemia indicated. Consider iron-rich foods and consult a healthcare provider."
|
| 374 |
+
elif hb_pred >= 8:
|
| 375 |
+
severity = "Moderate Anemia"
|
| 376 |
+
color = "🟠"
|
| 377 |
+
recommendation = "Moderate anemia detected. Please consult a healthcare provider for a confirmatory blood test."
|
| 378 |
+
else:
|
| 379 |
+
severity = "Severe Anemia"
|
| 380 |
+
color = "🔴"
|
| 381 |
+
recommendation = "Severe anemia indicated. Please seek immediate medical attention."
|
| 382 |
+
|
| 383 |
+
# Log data
|
| 384 |
+
actual_hb = float(actual_hb_input) if actual_hb_input and actual_hb_input > 0 else None
|
| 385 |
+
log_data(session_id, tabular_features, image_features, hb_pred, actual_hb)
|
| 386 |
+
|
| 387 |
+
# Format result
|
| 388 |
+
result = f"""
|
| 389 |
+
## {color} Estimated Hemoglobin: {hb_pred} g/dL
|
| 390 |
+
|
| 391 |
+
### Status: {severity}
|
| 392 |
+
|
| 393 |
+
{recommendation}
|
| 394 |
+
|
| 395 |
+
---
|
| 396 |
+
*Session ID: {session_id}*
|
| 397 |
+
*Save this ID if you want to provide actual Hb value later.*
|
| 398 |
+
"""
|
| 399 |
+
|
| 400 |
+
return result, session_id, f"{hb_pred} g/dL"
|
| 401 |
+
|
| 402 |
+
|
| 403 |
+
# ============================================================
|
| 404 |
+
# GRADIO INTERFACE
|
| 405 |
+
# ============================================================
|
| 406 |
+
def create_interface():
|
| 407 |
+
"""Build the Gradio UI."""
|
| 408 |
+
|
| 409 |
+
with gr.Blocks(title="Anemia Screening Tool", theme=gr.themes.Soft()) as app:
|
| 410 |
+
|
| 411 |
+
gr.Markdown("""
|
| 412 |
+
# 🩺 Non-Invasive Anemia Screening Tool
|
| 413 |
+
|
| 414 |
+
Estimate hemoglobin levels from a photo of the palpebral conjunctiva (inner eyelid).
|
| 415 |
+
|
| 416 |
+
**Instructions:**
|
| 417 |
+
1. Upload a clear photo of the lower inner eyelid WITH the color calibration card visible
|
| 418 |
+
2. Fill in the health information form
|
| 419 |
+
3. Click "Estimate Hemoglobin"
|
| 420 |
+
|
| 421 |
+
⚠️ *This is a screening tool, not a diagnosis. Please consult a healthcare provider for confirmation.*
|
| 422 |
+
|
| 423 |
+
---
|
| 424 |
+
""")
|
| 425 |
+
|
| 426 |
+
with gr.Row():
|
| 427 |
+
# Left column - Image upload
|
| 428 |
+
with gr.Column(scale=1):
|
| 429 |
+
gr.Markdown("### 📷 Image Upload")
|
| 430 |
+
image_input = gr.Image(
|
| 431 |
+
label="Palpebral Conjunctiva Image (with color card)",
|
| 432 |
+
type="numpy"
|
| 433 |
+
)
|
| 434 |
+
gr.Markdown("*Ensure the grey/white color card is visible in the image for accurate calibration.*")
|
| 435 |
+
|
| 436 |
+
# Right column - Form
|
| 437 |
+
with gr.Column(scale=2):
|
| 438 |
+
gr.Markdown("### 📋 Health Information")
|
| 439 |
+
|
| 440 |
+
with gr.Accordion("Demographics", open=True):
|
| 441 |
+
with gr.Row():
|
| 442 |
+
age = gr.Slider(minimum=10, maximum=80, value=25, step=1, label="Age (years)")
|
| 443 |
+
family_size = gr.Slider(minimum=1, maximum=15, value=4, step=1, label="Family Size")
|
| 444 |
+
income_range = gr.Dropdown(
|
| 445 |
+
choices=["Below ₹5,000", "₹5,000 - ₹10,000", "₹10,000 - ₹15,000",
|
| 446 |
+
"₹15,000 - ₹25,000", "₹25,000 - ₹50,000", "Above ₹50,000"],
|
| 447 |
+
value="₹10,000 - ₹15,000",
|
| 448 |
+
label="Monthly Family Income"
|
| 449 |
+
)
|
| 450 |
+
|
| 451 |
+
with gr.Accordion("Diet & Nutrition", open=True):
|
| 452 |
+
diet = gr.Radio(
|
| 453 |
+
choices=["Vegetarian", "Non-vegetarian", "Mixed"],
|
| 454 |
+
value="Mixed",
|
| 455 |
+
label="Dietary Habit"
|
| 456 |
+
)
|
| 457 |
+
gr.Markdown("**Iron-rich foods consumed regularly:**")
|
| 458 |
+
with gr.Row():
|
| 459 |
+
food_grains = gr.Checkbox(label="Whole Grains", value=True)
|
| 460 |
+
food_leafy = gr.Checkbox(label="Leafy Vegetables", value=True)
|
| 461 |
+
food_cereals = gr.Checkbox(label="Cereals", value=True)
|
| 462 |
+
with gr.Row():
|
| 463 |
+
food_pulses = gr.Checkbox(label="Pulses/Lentils", value=True)
|
| 464 |
+
food_fish = gr.Checkbox(label="Fish", value=False)
|
| 465 |
+
food_eggs = gr.Checkbox(label="Eggs", value=False)
|
| 466 |
+
with gr.Row():
|
| 467 |
+
food_meat = gr.Checkbox(label="Meat", value=False)
|
| 468 |
+
food_jaggery = gr.Checkbox(label="Jaggery", value=False)
|
| 469 |
+
food_nuts = gr.Checkbox(label="Nuts", value=False)
|
| 470 |
+
with gr.Row():
|
| 471 |
+
fruit_freq = gr.Dropdown(
|
| 472 |
+
choices=["Daily", "Twice a week", "Once a week", "Rarely", "Never"],
|
| 473 |
+
value="Twice a week",
|
| 474 |
+
label="Fruit Consumption"
|
| 475 |
+
)
|
| 476 |
+
veg_freq = gr.Dropdown(
|
| 477 |
+
choices=["Daily", "Twice a week", "Once a week", "Rarely", "Never"],
|
| 478 |
+
value="Daily",
|
| 479 |
+
label="Vegetable Consumption"
|
| 480 |
+
)
|
| 481 |
+
tea_coffee = gr.Radio(
|
| 482 |
+
choices=["Yes", "No"],
|
| 483 |
+
value="Yes",
|
| 484 |
+
label="Daily Tea/Coffee Consumption"
|
| 485 |
+
)
|
| 486 |
+
|
| 487 |
+
with gr.Accordion("Medical History", open=False):
|
| 488 |
+
gr.Markdown("**Current Conditions:**")
|
| 489 |
+
with gr.Row():
|
| 490 |
+
comorb_dm = gr.Checkbox(label="Diabetes", value=False)
|
| 491 |
+
comorb_htn = gr.Checkbox(label="Hypertension", value=False)
|
| 492 |
+
comorb_thyroid = gr.Checkbox(label="Thyroid Disorder", value=False)
|
| 493 |
+
with gr.Row():
|
| 494 |
+
prev_anemia = gr.Radio(choices=["Yes", "No"], value="No", label="Anemia in past 12 months")
|
| 495 |
+
family_anemia = gr.Radio(choices=["Yes", "No"], value="No", label="Family history of anemia")
|
| 496 |
+
with gr.Row():
|
| 497 |
+
hookworm = gr.Radio(choices=["Yes", "No"], value="No", label="History of hookworm")
|
| 498 |
+
bleeding_disorder = gr.Radio(choices=["Yes", "No"], value="No", label="Bleeding disorder")
|
| 499 |
+
with gr.Row():
|
| 500 |
+
deworming = gr.Radio(choices=["Yes", "No"], value="Yes", label="Deworming done")
|
| 501 |
+
with gr.Row():
|
| 502 |
+
family_dm = gr.Radio(choices=["Yes", "No"], value="No", label="Family history: Diabetes")
|
| 503 |
+
family_htn = gr.Radio(choices=["Yes", "No"], value="No", label="Family history: Hypertension")
|
| 504 |
+
|
| 505 |
+
with gr.Accordion("Menstrual & Obstetric History", open=False):
|
| 506 |
+
with gr.Row():
|
| 507 |
+
menstrual = gr.Radio(
|
| 508 |
+
choices=["Regular", "Irregular", "Not applicable"],
|
| 509 |
+
value="Regular",
|
| 510 |
+
label="Menstrual Cycle"
|
| 511 |
+
)
|
| 512 |
+
pads_per_day = gr.Dropdown(
|
| 513 |
+
choices=["1-2", "2-3", "3-4", "4-5", "More than 5", "Not applicable"],
|
| 514 |
+
value="2-3",
|
| 515 |
+
label="Pads per day (first 2-3 days)"
|
| 516 |
+
)
|
| 517 |
+
gr.Markdown("**Obstetric History (enter 0 if not applicable):**")
|
| 518 |
+
with gr.Row():
|
| 519 |
+
gravida = gr.Slider(minimum=0, maximum=10, value=0, step=1, label="Gravida (pregnancies)")
|
| 520 |
+
para = gr.Slider(minimum=0, maximum=10, value=0, step=1, label="Para (deliveries)")
|
| 521 |
+
live_births = gr.Slider(minimum=0, maximum=10, value=0, step=1, label="Live Births")
|
| 522 |
+
with gr.Row():
|
| 523 |
+
abortions = gr.Slider(minimum=0, maximum=5, value=0, step=1, label="Abortions")
|
| 524 |
+
stillbirths = gr.Slider(minimum=0, maximum=5, value=0, step=1, label="Stillbirths")
|
| 525 |
+
|
| 526 |
+
gr.Markdown("---")
|
| 527 |
+
|
| 528 |
+
with gr.Row():
|
| 529 |
+
with gr.Column():
|
| 530 |
+
actual_hb_input = gr.Number(
|
| 531 |
+
label="Already have a blood test result? Enter actual Hb (g/dL) — Optional",
|
| 532 |
+
value=0,
|
| 533 |
+
minimum=0,
|
| 534 |
+
maximum=25
|
| 535 |
+
)
|
| 536 |
+
with gr.Column():
|
| 537 |
+
submit_btn = gr.Button("🔬 Estimate Hemoglobin", variant="primary", size="lg")
|
| 538 |
+
|
| 539 |
+
gr.Markdown("---")
|
| 540 |
+
|
| 541 |
+
# Results
|
| 542 |
+
with gr.Row():
|
| 543 |
+
result_output = gr.Markdown(label="Result")
|
| 544 |
+
with gr.Row():
|
| 545 |
+
session_output = gr.Textbox(label="Session ID", interactive=False)
|
| 546 |
+
hb_output = gr.Textbox(label="Estimated Hb", interactive=False)
|
| 547 |
+
|
| 548 |
+
# Privacy notice
|
| 549 |
+
gr.Markdown("""
|
| 550 |
+
---
|
| 551 |
+
### 🔒 Privacy Notice
|
| 552 |
+
|
| 553 |
+
Your data is collected **anonymously** to improve this screening tool. We do NOT collect:
|
| 554 |
+
- Name, address, phone number, or email
|
| 555 |
+
- Raw images (only extracted color features are stored)
|
| 556 |
+
- Any personally identifiable information
|
| 557 |
+
|
| 558 |
+
By using this tool, you consent to anonymous data collection for research purposes.
|
| 559 |
+
|
| 560 |
+
---
|
| 561 |
+
*Developed by JIPMER Anemia Screening Study | For research use only*
|
| 562 |
+
""")
|
| 563 |
+
|
| 564 |
+
# Connect button
|
| 565 |
+
submit_btn.click(
|
| 566 |
+
fn=predict_hb,
|
| 567 |
+
inputs=[
|
| 568 |
+
image_input,
|
| 569 |
+
age, income_range, family_size, diet,
|
| 570 |
+
food_grains, food_leafy, food_cereals, food_pulses,
|
| 571 |
+
food_fish, food_eggs, food_meat, food_jaggery, food_nuts,
|
| 572 |
+
fruit_freq, veg_freq, tea_coffee,
|
| 573 |
+
comorb_dm, comorb_htn, comorb_thyroid,
|
| 574 |
+
prev_anemia, family_anemia, hookworm, bleeding_disorder, deworming,
|
| 575 |
+
menstrual, pads_per_day,
|
| 576 |
+
gravida, para, live_births, abortions, stillbirths,
|
| 577 |
+
family_dm, family_htn,
|
| 578 |
+
actual_hb_input
|
| 579 |
+
],
|
| 580 |
+
outputs=[result_output, session_output, hb_output]
|
| 581 |
+
)
|
| 582 |
+
|
| 583 |
+
return app
|
| 584 |
+
|
| 585 |
+
|
| 586 |
+
# ============================================================
|
| 587 |
+
# MAIN
|
| 588 |
+
# ============================================================
|
| 589 |
+
if __name__ == "__main__":
|
| 590 |
+
print("Loading models...")
|
| 591 |
+
load_models()
|
| 592 |
+
|
| 593 |
+
print("Starting app...")
|
| 594 |
+
app = create_interface()
|
| 595 |
+
app.launch()
|
best.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:855d25f15fdb3c145219cdb418c6686aa74a43aa85b493f2d1b5c98bb909bc17
|
| 3 |
+
size 6779380
|
model.pkl
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:09c7c101f7a5788273dcde5063d5eddda26c80e76142bd5b3935c824d7165634
|
| 3 |
+
size 1351178
|
requirements.txt
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gradio>=4.0.0
|
| 2 |
+
numpy>=1.24.0
|
| 3 |
+
pandas>=2.0.0
|
| 4 |
+
opencv-python-headless>=4.8.0
|
| 5 |
+
ultralytics>=8.0.0
|
| 6 |
+
scikit-learn>=1.3.0
|
| 7 |
+
xgboost>=2.0.0
|