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Commit History

May 2

15:14
fix(demo): wire every showcase path end-to-end with auto-resolved artifacts⁠

mekosotto +1: Claude Opus 4.7 (1M context)

cc1c9fc
15:00
feat(researcher): DCE-MRI BBB permeability bridge + drug-dose adjuster⁠

mekosotto +1: Claude Opus 4.7 (1M context)

327b23d
14:41
feat(eeg,frontend): EEG fusion-flow test + Streamlit EEG form + real-artifact sanity⁠

mekosotto

e8e922d
14:40
feat(api): add POST /predict/eeg route (stub-able for demo)

mekosotto

a2a375c
14:40
feat(models): EEG classifier loader + predict (stub-able for hackathon demo)

mekosotto

a3f2882
14:38
feat(agents): retrieve_context corpus dispatch (reference vs clinical)

mekosotto

91dde0d
14:37
feat(rag): TF-IDF clinical retrieval with Turkish/English query expansion

mekosotto

8eff23e
14:36
feat(rag): clinical TF-IDF index loader with __main__.Chunk routing

mekosotto

6b2c154
14:34
test(models): real-artifact sanity for MRI DL 2D (skips when absent)

mekosotto

29faa9d
14:33
feat(api): dispatch /predict/mri via MRI_MODEL_KIND env var

mekosotto

10ed38c
14:32
feat(models): selector dispatch for volumetric vs 2D MRI models

mekosotto

621cb25
14:32
feat(models): add 2D resnet18 4-class Alzheimer's MRI inference module

mekosotto

11f62d8
13:54
fix(fusion): correct logit-scale comment; top_disease=None on empty input⁠

mekosotto +1: Claude Sonnet 4.6

ac781dd
13:49
test(fusion): end-to-end smoke + README section⁠

mekosotto +1: Claude Sonnet 4.6

f45c02a
13:46
feat(agents): register run_fusion tool for multi-modal disease confidence⁠

mekosotto +1: Claude Sonnet 4.6

4fff9d2
13:43
feat(api): add POST /fusion/predict route for multi-modal fusion⁠

mekosotto +1: Claude Sonnet 4.6

5d4dc71
13:37
feat(fusion): add core multi-modal fuse() with per-disease attribution⁠

mekosotto +1: Claude Sonnet 4.6

2134339
13:29
feat(fusion): map modality predictions to per-disease signals

mekosotto

b91e55e
13:27
feat(fusion): add clinical-test signal normalisers (MMSE/MoCA/UPDRS/gait/age)

mekosotto

dd8acc2
13:23
feat(fusion): add disease/modality weight registry

mekosotto

ccf23d1
13:21
fix(fusion): drop unused protected_namespaces; pin tighter bound tests⁠

mekosotto +1: Claude Sonnet 4.6

1914360
13:16
feat(fusion): add pydantic data contract for multi-modal fusion⁠

mekosotto +1: Claude Sonnet 4.6

a189a33
12:54
test(agents/orchestrator): pin caplog handler to INFO (hardens against pytest variance)

mekosotto

8418e43
12:44
fix(agents/orchestrator): log dropped out-of-stage tool calls (was silent)

mekosotto

a0c0f61
12:30
test(agents/routing): assert sites_csv key on NIfTI route (depth parity with EEG test)

mekosotto

0ccd9ad
12:26
test(agents/routing): regression tests for MRI/EEG/BBB routing heuristic⁠

mekosotto +1: Claude Sonnet 4.6

66d1da2
12:15
test(mri/model): drop redundant caplog.at_level (direct handler attach is the actual mechanism)⁠

mekosotto +1: Claude Sonnet 4.6

a3b6bb6
12:05
fix(mri/model): warn when label_names length != model output dim (was silent override)

mekosotto

9ae5b40
11:32
Add project files

bekir32419

c0a7163
10:43
fix(agents/live): skip on NotFoundError (model availability churns on OpenRouter free-tier)

mekosotto

5af70c3
10:33
fix(agents/live): also gate live test on BBB model artifact (avoids dotenv-loaded key path)

mekosotto

124f0d1
10:23
feat(api): POST /agent/run endpoint (orchestrator + RAG, stub-injectable)⁠

mekosotto +1: Claude Sonnet 4.6

55d9d32
10:20
fix(agents/tools): parameterize processed_dir + translate HTTPException → ValueError⁠

mekosotto +1: Claude Sonnet 4.6

6d2aa47
10:17
feat(agents): orchestrator loop (function-calling + tool trace + max-steps gate)⁠

mekosotto +1: Claude Sonnet 4.6

2091a1b
10:14
feat(agents): Tool dataclass + registry + 4 tool wrappers (3 pipelines + RAG)⁠

mekosotto +1: Claude Sonnet 4.6

460fcc2
10:10
feat(rag): RAGRetriever (load + search → chunks with scores)

mekosotto

978f645
10:08
feat(rag): ingest CLI (markdown/PDF → chunks → FAISS) + sample KB fixtures

mekosotto

cf5c011
10:05
fix(rag/store): copy vectors before in-place normalize_L2 (no caller mutation)

mekosotto

57801de
10:03
feat(rag): FAISS inner-product store with chunk metadata + roundtrip⁠

mekosotto +1: Claude Opus 4.7 (1M context)

7cc3fef
09:57
feat(rag): fastembed wrapper (Embedder, bge-small-en-v1.5, 384-dim)⁠

mekosotto +1: Claude Opus 4.7 (1M context)

0d489f8
09:54
feat(rag): paragraph-aware chunker (chunk_text)

mekosotto

75fd700
08:22
fix(test): attach caplog handler to non-propagating explainer logger⁠

mekosotto

fb3eff2
08:13
test(llm): tighten live integration test (slow marker, log-gated skip, on-topic assertion)

mekosotto

b38c6b3
08:07
test(llm): add network-gated end-to-end OpenRouter integration test

mekosotto

32e1d40
07:51
test(llm): pin 401 short-circuit + 400 try-next-model behavior (red)

mekosotto

4d00c18

Apr 30

15:18
test(deploy): assert Dockerfile and Dockerfile.hf stay byte-identical⁠

mekosotto +1: Claude Opus 4.7 (1M context)

5774b48
15:10
test(deploy): scan ENV lines only in MLflow kill-switch guard (avoid comment false-positive)⁠

mekosotto +1: Claude Opus 4.7 (1M context)

1e071e5
15:06
test(deploy): assert Dockerfile seeds EEG fixture, runs all pipelines, drops MLflow kill-switch (RED)

mekosotto

3060b75
15:01
fix(frontend): EEG default path points at fixture (HF container has no data/raw/eeg.fif)

mekosotto

2909447
12:30
feat(deploy): Hugging Face Spaces Dockerfile + supervisord launcher⁠

mekosotto +1: Claude Opus 4.7 (1M context)

7d54187

Commit History

May 2

fix(demo): wire every showcase path end-to-end with auto-resolved artifacts⁠

feat(researcher): DCE-MRI BBB permeability bridge + drug-dose adjuster⁠

feat(eeg,frontend): EEG fusion-flow test + Streamlit EEG form + real-artifact sanity⁠

feat(api): add POST /predict/eeg route (stub-able for demo)

feat(models): EEG classifier loader + predict (stub-able for hackathon demo)

feat(agents): retrieve_context corpus dispatch (reference vs clinical)

feat(rag): TF-IDF clinical retrieval with Turkish/English query expansion

feat(rag): clinical TF-IDF index loader with __main__.Chunk routing

test(models): real-artifact sanity for MRI DL 2D (skips when absent)

feat(api): dispatch /predict/mri via MRI_MODEL_KIND env var

feat(models): selector dispatch for volumetric vs 2D MRI models

feat(models): add 2D resnet18 4-class Alzheimer's MRI inference module

fix(fusion): correct logit-scale comment; top_disease=None on empty input⁠

test(fusion): end-to-end smoke + README section⁠

feat(agents): register run_fusion tool for multi-modal disease confidence⁠

feat(api): add POST /fusion/predict route for multi-modal fusion⁠

feat(fusion): add core multi-modal fuse() with per-disease attribution⁠

feat(fusion): map modality predictions to per-disease signals

feat(fusion): add clinical-test signal normalisers (MMSE/MoCA/UPDRS/gait/age)

feat(fusion): add disease/modality weight registry

fix(fusion): drop unused protected_namespaces; pin tighter bound tests⁠

feat(fusion): add pydantic data contract for multi-modal fusion⁠

test(agents/orchestrator): pin caplog handler to INFO (hardens against pytest variance)

fix(agents/orchestrator): log dropped out-of-stage tool calls (was silent)

test(agents/routing): assert sites_csv key on NIfTI route (depth parity with EEG test)

test(agents/routing): regression tests for MRI/EEG/BBB routing heuristic⁠

test(mri/model): drop redundant caplog.at_level (direct handler attach is the actual mechanism)⁠

fix(mri/model): warn when label_names length != model output dim (was silent override)

Add project files

fix(agents/live): skip on NotFoundError (model availability churns on OpenRouter free-tier)

fix(agents/live): also gate live test on BBB model artifact (avoids dotenv-loaded key path)

feat(api): POST /agent/run endpoint (orchestrator + RAG, stub-injectable)⁠

fix(agents/tools): parameterize processed_dir + translate HTTPException → ValueError⁠

feat(agents): orchestrator loop (function-calling + tool trace + max-steps gate)⁠

feat(agents): Tool dataclass + registry + 4 tool wrappers (3 pipelines + RAG)⁠

feat(rag): RAGRetriever (load + search → chunks with scores)

feat(rag): ingest CLI (markdown/PDF → chunks → FAISS) + sample KB fixtures

fix(rag/store): copy vectors before in-place normalize_L2 (no caller mutation)

feat(rag): FAISS inner-product store with chunk metadata + roundtrip⁠

feat(rag): fastembed wrapper (Embedder, bge-small-en-v1.5, 384-dim)⁠

feat(rag): paragraph-aware chunker (chunk_text)

fix(test): attach caplog handler to non-propagating explainer logger⁠

test(llm): tighten live integration test (slow marker, log-gated skip, on-topic assertion)

test(llm): add network-gated end-to-end OpenRouter integration test

test(llm): pin 401 short-circuit + 400 try-next-model behavior (red)

Apr 30

test(deploy): assert Dockerfile and Dockerfile.hf stay byte-identical⁠

test(deploy): scan ENV lines only in MLflow kill-switch guard (avoid comment false-positive)⁠

test(deploy): assert Dockerfile seeds EEG fixture, runs all pipelines, drops MLflow kill-switch (RED)

fix(frontend): EEG default path points at fixture (HF container has no data/raw/eeg.fif)

feat(deploy): Hugging Face Spaces Dockerfile + supervisord launcher⁠

feat(rag): clinical TF-IDF index loader with main.Chunk routing