Upload search.py
Browse files- src/api/search.py +356 -134
src/api/search.py
CHANGED
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@@ -1,14 +1,6 @@
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"""
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search.py — LibBee v3
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Key fixes:
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- PRIMO: resource type (articles/books) sent as rtype FACET, not q= keyword
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- PRIMO: year filter sent as facet_searchcreationdate FACET, not keyword
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- PubMed: year filter wired to mindate/maxdate params (was silently ignored before)
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- PubMed: peer_reviewed mapped to free full text filter
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- query sent to both APIs is clean topic keywords only — no rtype noise
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"""
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import logging
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from urllib.parse import quote
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import httpx
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@@ -20,6 +12,90 @@ from src.config import get_settings
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logger = logging.getLogger(__name__)
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router = APIRouter()
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class SearchRequest(BaseModel):
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query: str
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open_access: bool = False
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year_from: Optional[str] = None
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year_to: Optional[str] = None
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@field_validator("query")
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@classmethod
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@classmethod
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def valid_resource_type(cls, v: str) -> str:
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allowed = {"articles", "books", "both"}
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def _safe_metrics_increment(key: str) -> None:
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return
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def _safe_metrics_bucket(bucket: str, key: str) -> None:
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try:
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from app import metrics_service
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return
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@router.post("")
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async def search_endpoint(req: SearchRequest):
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_safe_metrics_increment("search_requests")
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return await search_scholar(req)
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# ── PRIMO ──────────────────────────────────────────────────────────────────────
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async def search_primo(req: SearchRequest, api_key: str):
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"""
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Send clean topic keywords to q=any,contains.
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Resource type, peer review, open access, and year are all FACETS — never keywords.
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PRIMO facet reference:
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facet_rtype,include,articles → journal articles
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facet_rtype,include,books → books / ebooks
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facet_tlevel,include,peer_reviewed
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facet_tlevel,include,online_resources (open access proxy)
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facet_searchcreationdate,include,YYYY|,|YYYY
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"""
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if not api_key:
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logger.warning("PRIMO_API_KEY not configured")
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_safe_metrics_bucket("errors", "primo_missing_api_key")
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return {"error": "PRIMO_API_KEY not configured", "results": [], "source": "PRIMO"}
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# ── The query sent to PRIMO must be ONLY topic keywords ──────────────────
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# Strip any residual resource-type words that may have slipped through
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# topic extraction (belt-and-braces defence).
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clean_query = _strip_resource_noise(req.query)
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if not clean_query:
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clean_query = req.query
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query_encoded = quote(clean_query)
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url = (
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f"https://api-eu.hosted.exlibrisgroup.com/primo/v1/search"
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f"?vid=971KUOSTAR_INST:KU&tab=Everything&scope=MyInst_and_CI"
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f"&q=any,contains,{query_encoded}&lang=en&sort=rank&limit={req.limit}"
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f"&offset=0&mode=advanced&apikey={api_key}"
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)
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# ── Build facets — resource type, quality, year ───────────────────────────
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facets = []
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# Resource type → rtype facet (NOT a keyword)
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if req.resource_type == "articles":
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facets.append("facet_rtype,include,articles")
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elif req.resource_type == "books":
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facets.append("facet_rtype,include,books")
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# "both" → no rtype facet (search everything)
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if req.peer_reviewed:
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facets.append("facet_tlevel,include,peer_reviewed")
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if req.open_access:
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facets.append("facet_tlevel,include,online_resources")
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if req.year_from or req.year_to:
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yf = req.year_from or "0001"
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yt = req.year_to or "9999"
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facets.append(f"facet_searchcreationdate,include,{yf}|,|{yt}")
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for facet in facets:
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url += f"&multiFacets={quote(facet)}"
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)
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try:
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async with httpx.AsyncClient(timeout=20) as client:
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r = await client.get(url, headers={"Accept": "application/json"})
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logger.info("PRIMO status=%s", r.status_code)
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if r.status_code != 200:
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_safe_metrics_bucket("errors", f"primo_{r.status_code}")
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data = r.json()
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docs = data.get("docs", [])
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results = []
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for doc in docs[: req.limit]:
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pnx = doc.get("pnx", {})
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"date": (d.get("date") or [""])[0],
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"type": (d.get("type") or [""])[0],
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"source": (d.get("source") or [""])[0],
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"primo_url":
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f"https://khalifa.primo.exlibrisgroup.com/discovery/search"
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f"?query=any,contains,{query_encoded}&vid=971KUOSTAR_INST:KU"
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),
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"_source": "PRIMO",
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})
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return {
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"total": data.get("info", {}).get("total", 0),
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"results": results,
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"source": "PRIMO",
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}
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except httpx.TimeoutException:
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_safe_metrics_bucket("errors", "primo_timeout")
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return {"error": str(exc), "results": [], "source": "PRIMO"}
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def _strip_resource_noise(query: str) -> str:
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"""
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Remove resource-type and filter words that should be facets, not q= keywords.
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Called as a belt-and-braces guard before sending to PRIMO/PubMed.
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"""
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noise = re.compile(
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r"\b(articles?|papers?|books?|ebooks?|journals?|publications?|monographs?"
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r"|peer[- ]reviewed|open[- ]access|studies|study|research)\b",
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re.IGNORECASE,
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)
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cleaned = noise.sub(" ", query)
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# Collapse leftover AND/OR operators with no operands
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cleaned = re.sub(r"\s+(AND|OR)\s+(AND|OR)\s+", " AND ", cleaned, flags=re.IGNORECASE)
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cleaned = re.sub(r"^\s*(AND|OR)\s+", "", cleaned, flags=re.IGNORECASE)
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cleaned = re.sub(r"\s+(AND|OR)\s*$", "", cleaned, flags=re.IGNORECASE)
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return re.sub(r"\s+", " ", cleaned).strip()
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-
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-
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import re # noqa: E402 (needed for _strip_resource_noise above)
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-
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# ── PubMed ─────────────────────────────────────────────────────────────────────
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async def search_pubmed(req: SearchRequest):
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"""
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Year filters use mindate/maxdate params — NOT injected into the search term.
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Peer-reviewed filter uses [pt] (publication type) in the term.
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"""
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# Build clean term — topic keywords only
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clean_query = _strip_resource_noise(req.query)
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if not clean_query:
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clean_query = req.query
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-
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# Add peer-reviewed as a PubMed publication-type filter (appended to term)
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term = clean_query
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if req.peer_reviewed:
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term = f"({term}) AND Journal Article[pt]"
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query_encoded = quote(term)
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-
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# Date params (separate from search term — correct PubMed approach)
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date_params = ""
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if req.year_from or req.year_to:
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yf = req.year_from or "1900"
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yt = req.year_to or "3000"
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date_params = f"&mindate={yf}&maxdate={yt}&datetype=pdat"
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-
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logger.info(
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"PubMed term=%r peer_reviewed=%s year=%s-%s",
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term, req.peer_reviewed, req.year_from, req.year_to,
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)
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-
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try:
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async with httpx.AsyncClient(timeout=15) as client:
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search_url = (
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@@ -261,11 +498,9 @@ async def search_pubmed(req: SearchRequest):
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if r.status_code != 200:
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_safe_metrics_bucket("errors", "pubmed_search_failed")
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return {"error": "PubMed search failed", "results": [], "source": "PubMed"}
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-
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ids = r.json().get("esearchresult", {}).get("idlist", [])
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if not ids:
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return {"total": 0, "results": [], "source": "PubMed"}
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-
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fetch_url = (
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f"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi"
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f"?db=pubmed&id={','.join(ids)}&retmode=json"
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@@ -274,7 +509,6 @@ async def search_pubmed(req: SearchRequest):
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if r2.status_code != 200:
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_safe_metrics_bucket("errors", "pubmed_fetch_failed")
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return {"error": "PubMed fetch failed", "results": [], "source": "PubMed"}
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-
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data = r2.json().get("result", {})
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results = []
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for pid in ids:
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@@ -296,31 +530,20 @@ async def search_pubmed(req: SearchRequest):
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"_source": "PubMed",
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})
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return {"total": len(ids), "results": results, "source": "PubMed"}
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-
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except Exception as exc:
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logger.error("PubMed search error: %s", exc)
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_safe_metrics_bucket("errors", "pubmed_exception")
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return {"error": str(exc), "results": [], "source": "PubMed"}
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| 306 |
-
# ── Semantic Scholar ───────────────────────────────────────────────────────────
|
| 307 |
-
|
| 308 |
async def search_scholar(req: SearchRequest):
|
| 309 |
try:
|
| 310 |
-
params = {
|
| 311 |
-
"query": req.query,
|
| 312 |
-
"limit": req.limit,
|
| 313 |
-
"fields": "title,authors,year,venue,externalIds,citationCount",
|
| 314 |
-
}
|
| 315 |
async with httpx.AsyncClient(timeout=15) as client:
|
| 316 |
-
r = await client.get(
|
| 317 |
-
"https://api.semanticscholar.org/graph/v1/paper/search",
|
| 318 |
-
params=params,
|
| 319 |
-
)
|
| 320 |
if r.status_code != 200:
|
| 321 |
_safe_metrics_bucket("errors", f"semantic_{r.status_code}")
|
| 322 |
return {"error": f"Semantic Scholar API: {r.status_code}", "results": [], "source": "Semantic Scholar"}
|
| 323 |
-
|
| 324 |
data = r.json()
|
| 325 |
results = []
|
| 326 |
for paper in data.get("data", []):
|
|
@@ -340,7 +563,6 @@ async def search_scholar(req: SearchRequest):
|
|
| 340 |
"_source": "Semantic Scholar",
|
| 341 |
})
|
| 342 |
return {"total": data.get("total", 0), "results": results, "source": "Semantic Scholar"}
|
| 343 |
-
|
| 344 |
except Exception as exc:
|
| 345 |
logger.error("Semantic Scholar search error: %s", exc)
|
| 346 |
_safe_metrics_bucket("errors", "semantic_exception")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
import logging
|
| 2 |
+
import re
|
| 3 |
+
from typing import Dict, List, Optional
|
| 4 |
from urllib.parse import quote
|
| 5 |
|
| 6 |
import httpx
|
|
|
|
| 12 |
logger = logging.getLogger(__name__)
|
| 13 |
router = APIRouter()
|
| 14 |
|
| 15 |
+
PRIMO_BASE = "https://khalifa.primo.exlibrisgroup.com/discovery/search?vid=971KUOSTAR_INST:KU"
|
| 16 |
+
PRIMO_AI_BASE = "https://khalifa.primo.exlibrisgroup.com/discovery/researchAssistant?vid=971KUOSTAR_INST:KU&query="
|
| 17 |
+
EBSCO_AI_BASE = "https://research-ebsco-com.khalifa.idm.oclc.org/c/ntdlkp/search?q="
|
| 18 |
+
SCOPUS_AI_BASE = "https://www-scopus-com.khalifa.idm.oclc.org/pages/ai?query="
|
| 19 |
+
LEAPSPACE_BASE = "https://www.sciencedirect.com/leapspace?query="
|
| 20 |
+
CONSENSUS_BASE = "https://consensus.app/results/?q="
|
| 21 |
+
CURRENT_YEAR = 2026
|
| 22 |
+
|
| 23 |
+
PREFIX_PATTERNS = [
|
| 24 |
+
r"^summari[sz]e\s+the\s+latest\s+studies\s+in\s+",
|
| 25 |
+
r"^summari[sz]e\s+the\s+latest\s+research\s+on\s+",
|
| 26 |
+
r"^summari[sz]e\s+recent\s+studies\s+in\s+",
|
| 27 |
+
r"^summari[sz]e\s+recent\s+research\s+on\s+",
|
| 28 |
+
r"^give\s+me\s+a\s+summary\s+of\s+",
|
| 29 |
+
r"^give\s+me\s+an\s+overview\s+of\s+",
|
| 30 |
+
r"^give\s+me\s+a\s+brief\s+overview\s+of\s+",
|
| 31 |
+
r"^find\s+(?:peer[- ]reviewed\s+)?articles?\s+on\s+",
|
| 32 |
+
r"^find\s+(?:peer[- ]reviewed\s+)?papers?\s+on\s+",
|
| 33 |
+
r"^find\s+books?\s+on\s+",
|
| 34 |
+
r"^search\s+for\s+articles?\s+on\s+",
|
| 35 |
+
r"^search\s+for\s+papers?\s+on\s+",
|
| 36 |
+
r"^i\s+need\s+(?:peer[- ]reviewed\s+)?articles?\s+on\s+",
|
| 37 |
+
r"^i\s+need\s+papers?\s+on\s+",
|
| 38 |
+
r"^i\s+need\s+books?\s+on\s+",
|
| 39 |
+
r"^show\s+me\s+articles?\s+on\s+",
|
| 40 |
+
r"^get\s+me\s+articles?\s+on\s+",
|
| 41 |
+
r"^tell\s+me\s+about\s+",
|
| 42 |
+
r"^explain\s+",
|
| 43 |
+
r"^overview\s+of\s+",
|
| 44 |
+
r"^summary\s+of\s+",
|
| 45 |
+
r"^latest\s+studies\s+in\s+",
|
| 46 |
+
r"^latest\s+research\s+on\s+",
|
| 47 |
+
r"^recent\s+research\s+on\s+",
|
| 48 |
+
r"^recent\s+studies\s+in\s+",
|
| 49 |
+
]
|
| 50 |
+
|
| 51 |
+
RESOURCE_NOISE_RE = re.compile(
|
| 52 |
+
r"\b(articles?|papers?|books?|ebooks?|journals?|publications?|monographs?"
|
| 53 |
+
r"|peer[- ]reviewed|open[- ]access|studies|study|research|latest|recent)\b",
|
| 54 |
+
re.IGNORECASE,
|
| 55 |
+
)
|
| 56 |
+
|
| 57 |
+
STOP_WORDS = {
|
| 58 |
+
"the", "a", "an", "and", "or", "of", "on", "in", "for", "to", "with", "by",
|
| 59 |
+
"from", "at", "about", "latest", "recent", "current", "summary", "overview", "brief",
|
| 60 |
+
"analysis", "review", "deep", "find", "search", "show", "give", "me", "need", "please",
|
| 61 |
+
}
|
| 62 |
+
|
| 63 |
+
PHRASE_SYNONYMS: Dict[str, List[str]] = {
|
| 64 |
+
"global warming": ["climate change"],
|
| 65 |
+
"climate change": ["global warming"],
|
| 66 |
+
"machine learning": ["artificial intelligence", "AI"],
|
| 67 |
+
"artificial intelligence": ["AI", "machine learning"],
|
| 68 |
+
"deep learning": ["neural networks"],
|
| 69 |
+
"renewable energy": ["clean energy", "sustainable energy"],
|
| 70 |
+
"energy transition": ["decarbonization"],
|
| 71 |
+
"cyber security": ["cybersecurity", "information security"],
|
| 72 |
+
"cybersecurity": ["cyber security", "information security"],
|
| 73 |
+
"public health": ["population health"],
|
| 74 |
+
"gene editing": ["CRISPR"],
|
| 75 |
+
"mental health": ["psychological health"],
|
| 76 |
+
"higher education": ["tertiary education", "universities"],
|
| 77 |
+
}
|
| 78 |
+
|
| 79 |
+
TOKEN_SYNONYMS: Dict[str, List[str]] = {
|
| 80 |
+
"healthcare": ["medicine", "clinical"],
|
| 81 |
+
"medical": ["clinical", "medicine"],
|
| 82 |
+
"nursing": ["clinical", "patient care"],
|
| 83 |
+
"education": ["teaching", "learning"],
|
| 84 |
+
"students": ["student"],
|
| 85 |
+
"student": ["students"],
|
| 86 |
+
"sustainability": ["sustainable development"],
|
| 87 |
+
"cancer": ["oncology"],
|
| 88 |
+
"heart": ["cardiovascular"],
|
| 89 |
+
"brain": ["neurology", "neuroscience"],
|
| 90 |
+
"politics": ["political"],
|
| 91 |
+
"engineering": ["engineer*"],
|
| 92 |
+
}
|
| 93 |
+
|
| 94 |
+
MEDICAL_HINT_RE = re.compile(
|
| 95 |
+
r"\b(medicine|medical|health|clinical|nursing|pharmacy|biomedical|pubmed|embase|cinahl|cochrane|uptodate|disease|therapy|treatment|diagnosis|patient|hospital|cancer|diabetes)\b",
|
| 96 |
+
re.IGNORECASE,
|
| 97 |
+
)
|
| 98 |
+
|
| 99 |
|
| 100 |
class SearchRequest(BaseModel):
|
| 101 |
query: str
|
|
|
|
| 105 |
open_access: bool = False
|
| 106 |
year_from: Optional[str] = None
|
| 107 |
year_to: Optional[str] = None
|
| 108 |
+
resource_type: str = "articles" # articles | books | both
|
| 109 |
+
boolean_query: Optional[str] = None
|
| 110 |
|
| 111 |
@field_validator("query")
|
| 112 |
@classmethod
|
|
|
|
| 137 |
@classmethod
|
| 138 |
def valid_resource_type(cls, v: str) -> str:
|
| 139 |
allowed = {"articles", "books", "both"}
|
| 140 |
+
return v if v in allowed else "articles"
|
| 141 |
+
|
| 142 |
+
|
| 143 |
+
class SearchPlanRequest(BaseModel):
|
| 144 |
+
question: str
|
| 145 |
+
peer_reviewed: bool = False
|
| 146 |
+
open_access: bool = False
|
| 147 |
+
year_from: Optional[str] = None
|
| 148 |
+
year_to: Optional[str] = None
|
| 149 |
+
resource_type: Optional[str] = None
|
| 150 |
+
|
| 151 |
|
| 152 |
|
| 153 |
def _safe_metrics_increment(key: str) -> None:
|
|
|
|
| 158 |
return
|
| 159 |
|
| 160 |
|
| 161 |
+
|
| 162 |
def _safe_metrics_bucket(bucket: str, key: str) -> None:
|
| 163 |
try:
|
| 164 |
from app import metrics_service
|
|
|
|
| 167 |
return
|
| 168 |
|
| 169 |
|
| 170 |
+
|
| 171 |
+
def _normalize_whitespace(text: str) -> str:
|
| 172 |
+
return re.sub(r"\s+", " ", (text or "").strip())
|
| 173 |
+
|
| 174 |
+
|
| 175 |
+
|
| 176 |
+
def _strip_resource_noise(query: str) -> str:
|
| 177 |
+
cleaned = RESOURCE_NOISE_RE.sub(" ", query or "")
|
| 178 |
+
cleaned = re.sub(r"\s+(AND|OR)\s+(AND|OR)\s+", " AND ", cleaned, flags=re.IGNORECASE)
|
| 179 |
+
cleaned = re.sub(r"^\s*(AND|OR)\s+", "", cleaned, flags=re.IGNORECASE)
|
| 180 |
+
cleaned = re.sub(r"\s+(AND|OR)\s*$", "", cleaned, flags=re.IGNORECASE)
|
| 181 |
+
return _normalize_whitespace(cleaned)
|
| 182 |
+
|
| 183 |
+
|
| 184 |
+
|
| 185 |
+
def _extract_topic(question: str) -> str:
|
| 186 |
+
q = _normalize_whitespace(question)
|
| 187 |
+
lower = q.lower()
|
| 188 |
+
for pat in PREFIX_PATTERNS:
|
| 189 |
+
lower_after = re.sub(pat, "", lower, count=1)
|
| 190 |
+
if lower_after != lower:
|
| 191 |
+
lower = lower_after
|
| 192 |
+
break
|
| 193 |
+
lower = re.sub(r"\b(last|past)\s+\d{1,2}\s+years?\b", " ", lower)
|
| 194 |
+
lower = re.sub(r"\bfrom\s+(19|20)\d{2}\s+(?:to|and|-)+\s+(19|20)\d{2}\b", " ", lower)
|
| 195 |
+
lower = re.sub(r"\b(19|20)\d{2}\b", " ", lower)
|
| 196 |
+
lower = _strip_resource_noise(lower)
|
| 197 |
+
return lower.strip(" .?") or _strip_resource_noise(question)
|
| 198 |
+
|
| 199 |
+
|
| 200 |
+
|
| 201 |
+
def _derive_resource_type_from_text(question: str, override: Optional[str] = None) -> str:
|
| 202 |
+
if override in {"articles", "books", "both"}:
|
| 203 |
+
return override
|
| 204 |
+
q = (question or "").lower()
|
| 205 |
+
if any(x in q for x in ["books", "book", "ebook", "ebooks"]):
|
| 206 |
+
return "books"
|
| 207 |
+
if any(x in q for x in ["articles", "article", "papers", "paper", "journals", "journal", "studies", "study"]):
|
| 208 |
+
return "articles"
|
| 209 |
+
return "both"
|
| 210 |
+
|
| 211 |
+
|
| 212 |
+
|
| 213 |
+
def _is_medical_query(question: str) -> bool:
|
| 214 |
+
return bool(MEDICAL_HINT_RE.search(question or ""))
|
| 215 |
+
|
| 216 |
+
|
| 217 |
+
|
| 218 |
+
def _quote_term(term: str) -> str:
|
| 219 |
+
term = _normalize_whitespace(term)
|
| 220 |
+
if not term:
|
| 221 |
+
return ""
|
| 222 |
+
if "*" in term:
|
| 223 |
+
return term
|
| 224 |
+
if " " in term or "-" in term:
|
| 225 |
+
return f'"{term}"'
|
| 226 |
+
return term
|
| 227 |
+
|
| 228 |
+
|
| 229 |
+
|
| 230 |
+
def _longest_phrase_match(tokens: List[str], start: int) -> Optional[str]:
|
| 231 |
+
max_len = min(3, len(tokens) - start)
|
| 232 |
+
for length in range(max_len, 0, -1):
|
| 233 |
+
phrase = " ".join(tokens[start:start + length]).lower()
|
| 234 |
+
if phrase in PHRASE_SYNONYMS:
|
| 235 |
+
return phrase
|
| 236 |
+
return None
|
| 237 |
+
|
| 238 |
+
|
| 239 |
+
|
| 240 |
+
def _concept_groups(topic: str) -> List[List[str]]:
|
| 241 |
+
topic = _normalize_whitespace(topic).lower()
|
| 242 |
+
raw_tokens = [t for t in re.findall(r"[a-z0-9]+", topic) if t not in STOP_WORDS and len(t) > 2]
|
| 243 |
+
groups: List[List[str]] = []
|
| 244 |
+
i = 0
|
| 245 |
+
while i < len(raw_tokens):
|
| 246 |
+
phrase = _longest_phrase_match(raw_tokens, i)
|
| 247 |
+
if phrase:
|
| 248 |
+
synonyms = PHRASE_SYNONYMS.get(phrase, [])
|
| 249 |
+
group = [phrase] + [s for s in synonyms if s.lower() != phrase]
|
| 250 |
+
groups.append(group)
|
| 251 |
+
i += len(phrase.split())
|
| 252 |
+
continue
|
| 253 |
+
token = raw_tokens[i]
|
| 254 |
+
group = [token]
|
| 255 |
+
group.extend([s for s in TOKEN_SYNONYMS.get(token, []) if s.lower() != token])
|
| 256 |
+
groups.append(group)
|
| 257 |
+
i += 1
|
| 258 |
+
|
| 259 |
+
if not groups and topic:
|
| 260 |
+
return [[topic]]
|
| 261 |
+
|
| 262 |
+
# collapse duplicate/single-token noise but preserve order
|
| 263 |
+
cleaned_groups: List[List[str]] = []
|
| 264 |
+
seen_primary = set()
|
| 265 |
+
for group in groups:
|
| 266 |
+
primary = group[0].lower()
|
| 267 |
+
if primary in seen_primary:
|
| 268 |
+
continue
|
| 269 |
+
seen_primary.add(primary)
|
| 270 |
+
unique_terms = []
|
| 271 |
+
seen_terms = set()
|
| 272 |
+
for term in group:
|
| 273 |
+
norm = term.lower()
|
| 274 |
+
if norm in seen_terms:
|
| 275 |
+
continue
|
| 276 |
+
seen_terms.add(norm)
|
| 277 |
+
unique_terms.append(term)
|
| 278 |
+
cleaned_groups.append(unique_terms)
|
| 279 |
+
return cleaned_groups[:4]
|
| 280 |
+
|
| 281 |
+
|
| 282 |
+
|
| 283 |
+
def build_primo_boolean_query(topic: str) -> str:
|
| 284 |
+
clean_topic = _strip_resource_noise(topic)
|
| 285 |
+
groups = _concept_groups(clean_topic)
|
| 286 |
+
clauses: List[str] = []
|
| 287 |
+
for group in groups:
|
| 288 |
+
if not group:
|
| 289 |
+
continue
|
| 290 |
+
if len(group) == 1:
|
| 291 |
+
clauses.append(_quote_term(group[0]))
|
| 292 |
+
else:
|
| 293 |
+
clauses.append("(" + " OR ".join(_quote_term(term) for term in group) + ")")
|
| 294 |
+
if not clauses:
|
| 295 |
+
return _quote_term(clean_topic or topic)
|
| 296 |
+
return " AND ".join(clauses)
|
| 297 |
+
|
| 298 |
+
|
| 299 |
+
|
| 300 |
+
def _primo_facets(resource_type: str = "both", peer_reviewed: bool = False, open_access: bool = False, year_from: Optional[str] = None, year_to: Optional[str] = None) -> List[str]:
|
| 301 |
+
facets: List[str] = []
|
| 302 |
+
if resource_type == "articles":
|
| 303 |
+
facets.append("rtype,include,articles")
|
| 304 |
+
elif resource_type == "books":
|
| 305 |
+
facets.append("rtype,include,books")
|
| 306 |
+
if peer_reviewed:
|
| 307 |
+
facets.append("tlevel,include,peer_reviewed")
|
| 308 |
+
if open_access:
|
| 309 |
+
facets.append("tlevel,include,online_resources")
|
| 310 |
+
if year_from or year_to:
|
| 311 |
+
yf = year_from or "0001"
|
| 312 |
+
yt = year_to or "9999"
|
| 313 |
+
facets.append(f"searchcreationdate,include,{yf}|,|{yt}")
|
| 314 |
+
return facets
|
| 315 |
+
|
| 316 |
+
|
| 317 |
+
|
| 318 |
+
def build_primo_discovery_url(boolean_query: str, resource_type: str = "both", peer_reviewed: bool = False, open_access: bool = False, year_from: Optional[str] = None, year_to: Optional[str] = None, tab: str = "Everything", scope: str = "MyInst_and_CI") -> str:
|
| 319 |
+
url = (
|
| 320 |
+
f"{PRIMO_BASE}&query=any,contains,{quote(boolean_query)}"
|
| 321 |
+
f"&tab={tab}&search_scope={scope}&lang=en&mode=advanced&offset=0"
|
| 322 |
+
)
|
| 323 |
+
for facet in _primo_facets(resource_type, peer_reviewed, open_access, year_from, year_to):
|
| 324 |
+
url += f"&facet={quote(facet)}"
|
| 325 |
+
return url
|
| 326 |
+
|
| 327 |
+
|
| 328 |
+
|
| 329 |
+
def build_pubmed_url(query: str, year_from: Optional[str] = None, year_to: Optional[str] = None, peer_reviewed: bool = False) -> str:
|
| 330 |
+
clean_query = _strip_resource_noise(query) or query
|
| 331 |
+
term = clean_query
|
| 332 |
+
if peer_reviewed:
|
| 333 |
+
term = f"({term}) AND Journal Article[pt]"
|
| 334 |
+
url = f"https://pubmed.ncbi.nlm.nih.gov/?term={quote(term)}"
|
| 335 |
+
if year_from or year_to:
|
| 336 |
+
yf = year_from or "1900"
|
| 337 |
+
yt = year_to or str(CURRENT_YEAR)
|
| 338 |
+
url += f"&filter=datesearch.y_custom&dates.from={yf}&dates.to={yt}"
|
| 339 |
+
return url
|
| 340 |
+
|
| 341 |
+
|
| 342 |
+
async def _grammar_refine_query(text: str) -> str:
|
| 343 |
+
settings = get_settings()
|
| 344 |
+
if not settings.openai_api_key:
|
| 345 |
+
return _normalize_whitespace(text)
|
| 346 |
+
try:
|
| 347 |
+
from langchain_openai import ChatOpenAI
|
| 348 |
+
llm = ChatOpenAI(model="gpt-4o-mini", temperature=0, max_tokens=60, openai_api_key=settings.openai_api_key)
|
| 349 |
+
response = await llm.ainvoke([
|
| 350 |
+
{"role": "system", "content": "Rewrite the user's search query in clear grammatical English. Keep meaning exactly the same. Return one sentence only."},
|
| 351 |
+
{"role": "user", "content": text},
|
| 352 |
+
])
|
| 353 |
+
return _normalize_whitespace(response.content) or _normalize_whitespace(text)
|
| 354 |
+
except Exception:
|
| 355 |
+
return _normalize_whitespace(text)
|
| 356 |
+
|
| 357 |
+
|
| 358 |
+
@router.post("/plan")
|
| 359 |
+
async def search_plan_endpoint(req: SearchPlanRequest):
|
| 360 |
+
_safe_metrics_increment("search_plans")
|
| 361 |
+
topic = _extract_topic(req.question)
|
| 362 |
+
resource_type = _derive_resource_type_from_text(req.question, req.resource_type)
|
| 363 |
+
boolean_query = build_primo_boolean_query(topic)
|
| 364 |
+
ai_tool_query = await _grammar_refine_query(req.question)
|
| 365 |
+
is_medical = _is_medical_query(req.question) or _is_medical_query(topic)
|
| 366 |
+
|
| 367 |
+
return {
|
| 368 |
+
"topic": topic,
|
| 369 |
+
"display_topic": topic.title(),
|
| 370 |
+
"resource_type": resource_type,
|
| 371 |
+
"is_medical": is_medical,
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| 372 |
+
"ai_tool_query": ai_tool_query,
|
| 373 |
+
"primo_boolean_query": boolean_query,
|
| 374 |
+
"primo_all_url": build_primo_discovery_url(boolean_query, "both", req.peer_reviewed, req.open_access, req.year_from, req.year_to, "Everything", "MyInst_and_CI"),
|
| 375 |
+
"primo_articles_url": build_primo_discovery_url(boolean_query, "articles", req.peer_reviewed, req.open_access, req.year_from, req.year_to, "CentralIndex", "CentralIndex"),
|
| 376 |
+
"primo_books_url": build_primo_discovery_url(boolean_query, "books", req.peer_reviewed, req.open_access, req.year_from, req.year_to, "Everything", "MyInst_and_CI"),
|
| 377 |
+
"primo_ai_url": f"{PRIMO_AI_BASE}{quote(ai_tool_query)}",
|
| 378 |
+
"pubmed_url": build_pubmed_url(topic, req.year_from, req.year_to, req.peer_reviewed) if is_medical else None,
|
| 379 |
+
"ebsco_ai_url": f"{EBSCO_AI_BASE}{quote(ai_tool_query)}",
|
| 380 |
+
"scopus_ai_url": f"{SCOPUS_AI_BASE}{quote(ai_tool_query)}",
|
| 381 |
+
"leapspace_url": f"{LEAPSPACE_BASE}{quote(ai_tool_query)}",
|
| 382 |
+
"consensus_url": f"{CONSENSUS_BASE}{quote(ai_tool_query)}",
|
| 383 |
+
}
|
| 384 |
+
|
| 385 |
+
|
| 386 |
@router.post("")
|
| 387 |
async def search_endpoint(req: SearchRequest):
|
| 388 |
_safe_metrics_increment("search_requests")
|
|
|
|
| 395 |
return await search_scholar(req)
|
| 396 |
|
| 397 |
|
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|
|
| 398 |
async def search_primo(req: SearchRequest, api_key: str):
|
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|
|
| 399 |
if not api_key:
|
| 400 |
logger.warning("PRIMO_API_KEY not configured")
|
| 401 |
_safe_metrics_bucket("errors", "primo_missing_api_key")
|
| 402 |
return {"error": "PRIMO_API_KEY not configured", "results": [], "source": "PRIMO"}
|
| 403 |
|
|
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|
|
|
|
|
|
|
| 404 |
clean_query = _strip_resource_noise(req.query)
|
| 405 |
if not clean_query:
|
| 406 |
+
clean_query = req.query
|
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|
|
|
|
| 407 |
|
| 408 |
+
boolean_query = req.boolean_query or build_primo_boolean_query(clean_query)
|
| 409 |
+
query_for_api = boolean_query
|
| 410 |
+
|
| 411 |
+
def _build_api_url(query_text: str) -> str:
|
| 412 |
+
url = (
|
| 413 |
+
f"https://api-eu.hosted.exlibrisgroup.com/primo/v1/search"
|
| 414 |
+
f"?vid=971KUOSTAR_INST:KU&tab=Everything&scope=MyInst_and_CI"
|
| 415 |
+
f"&q=any,contains,{quote(query_text)}&lang=en&sort=rank&limit={req.limit}"
|
| 416 |
+
f"&offset=0&mode=advanced&apikey={api_key}"
|
| 417 |
+
)
|
| 418 |
+
api_facets = []
|
| 419 |
+
if req.resource_type == "articles":
|
| 420 |
+
api_facets.append("facet_rtype,include,articles")
|
| 421 |
+
elif req.resource_type == "books":
|
| 422 |
+
api_facets.append("facet_rtype,include,books")
|
| 423 |
+
if req.peer_reviewed:
|
| 424 |
+
api_facets.append("facet_tlevel,include,peer_reviewed")
|
| 425 |
+
if req.open_access:
|
| 426 |
+
api_facets.append("facet_tlevel,include,online_resources")
|
| 427 |
+
if req.year_from or req.year_to:
|
| 428 |
+
yf = req.year_from or "0001"
|
| 429 |
+
yt = req.year_to or "9999"
|
| 430 |
+
api_facets.append(f"facet_searchcreationdate,include,{yf}|,|{yt}")
|
| 431 |
+
for facet in api_facets:
|
| 432 |
+
url += f"&multiFacets={quote(facet)}"
|
| 433 |
+
return url
|
| 434 |
+
|
| 435 |
+
logger.info("PRIMO boolean=%r clean_query=%r resource_type=%s", boolean_query, clean_query, req.resource_type)
|
| 436 |
|
| 437 |
try:
|
| 438 |
async with httpx.AsyncClient(timeout=20) as client:
|
| 439 |
+
url = _build_api_url(query_for_api)
|
| 440 |
r = await client.get(url, headers={"Accept": "application/json"})
|
| 441 |
+
if r.status_code == 400 and boolean_query != clean_query:
|
| 442 |
+
logger.warning("PRIMO 400 on boolean query; falling back to clean keywords")
|
| 443 |
+
url = _build_api_url(clean_query)
|
| 444 |
+
r = await client.get(url, headers={"Accept": "application/json"})
|
| 445 |
logger.info("PRIMO status=%s", r.status_code)
|
| 446 |
if r.status_code != 200:
|
| 447 |
_safe_metrics_bucket("errors", f"primo_{r.status_code}")
|
|
|
|
| 449 |
|
| 450 |
data = r.json()
|
| 451 |
docs = data.get("docs", [])
|
| 452 |
+
discovery_url = build_primo_discovery_url(boolean_query, req.resource_type, req.peer_reviewed, req.open_access, req.year_from, req.year_to)
|
| 453 |
results = []
|
| 454 |
for doc in docs[: req.limit]:
|
| 455 |
pnx = doc.get("pnx", {})
|
|
|
|
| 460 |
"date": (d.get("date") or [""])[0],
|
| 461 |
"type": (d.get("type") or [""])[0],
|
| 462 |
"source": (d.get("source") or [""])[0],
|
| 463 |
+
"primo_url": discovery_url,
|
|
|
|
|
|
|
|
|
|
| 464 |
"_source": "PRIMO",
|
| 465 |
})
|
| 466 |
+
return {"total": data.get("info", {}).get("total", 0), "results": results, "source": "PRIMO"}
|
|
|
|
|
|
|
|
|
|
|
|
|
| 467 |
|
| 468 |
except httpx.TimeoutException:
|
| 469 |
_safe_metrics_bucket("errors", "primo_timeout")
|
|
|
|
| 474 |
return {"error": str(exc), "results": [], "source": "PRIMO"}
|
| 475 |
|
| 476 |
|
|
|
|
|
|
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|
|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 477 |
async def search_pubmed(req: SearchRequest):
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 478 |
clean_query = _strip_resource_noise(req.query)
|
| 479 |
if not clean_query:
|
| 480 |
clean_query = req.query
|
|
|
|
|
|
|
| 481 |
term = clean_query
|
| 482 |
if req.peer_reviewed:
|
| 483 |
term = f"({term}) AND Journal Article[pt]"
|
|
|
|
| 484 |
query_encoded = quote(term)
|
|
|
|
|
|
|
| 485 |
date_params = ""
|
| 486 |
if req.year_from or req.year_to:
|
| 487 |
yf = req.year_from or "1900"
|
| 488 |
yt = req.year_to or "3000"
|
| 489 |
date_params = f"&mindate={yf}&maxdate={yt}&datetype=pdat"
|
| 490 |
+
logger.info("PubMed term=%r peer_reviewed=%s year=%s-%s", term, req.peer_reviewed, req.year_from, req.year_to)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 491 |
try:
|
| 492 |
async with httpx.AsyncClient(timeout=15) as client:
|
| 493 |
search_url = (
|
|
|
|
| 498 |
if r.status_code != 200:
|
| 499 |
_safe_metrics_bucket("errors", "pubmed_search_failed")
|
| 500 |
return {"error": "PubMed search failed", "results": [], "source": "PubMed"}
|
|
|
|
| 501 |
ids = r.json().get("esearchresult", {}).get("idlist", [])
|
| 502 |
if not ids:
|
| 503 |
return {"total": 0, "results": [], "source": "PubMed"}
|
|
|
|
| 504 |
fetch_url = (
|
| 505 |
f"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi"
|
| 506 |
f"?db=pubmed&id={','.join(ids)}&retmode=json"
|
|
|
|
| 509 |
if r2.status_code != 200:
|
| 510 |
_safe_metrics_bucket("errors", "pubmed_fetch_failed")
|
| 511 |
return {"error": "PubMed fetch failed", "results": [], "source": "PubMed"}
|
|
|
|
| 512 |
data = r2.json().get("result", {})
|
| 513 |
results = []
|
| 514 |
for pid in ids:
|
|
|
|
| 530 |
"_source": "PubMed",
|
| 531 |
})
|
| 532 |
return {"total": len(ids), "results": results, "source": "PubMed"}
|
|
|
|
| 533 |
except Exception as exc:
|
| 534 |
logger.error("PubMed search error: %s", exc)
|
| 535 |
_safe_metrics_bucket("errors", "pubmed_exception")
|
| 536 |
return {"error": str(exc), "results": [], "source": "PubMed"}
|
| 537 |
|
| 538 |
|
|
|
|
|
|
|
| 539 |
async def search_scholar(req: SearchRequest):
|
| 540 |
try:
|
| 541 |
+
params = {"query": req.query, "limit": req.limit, "fields": "title,authors,year,venue,externalIds,citationCount"}
|
|
|
|
|
|
|
|
|
|
|
|
|
| 542 |
async with httpx.AsyncClient(timeout=15) as client:
|
| 543 |
+
r = await client.get("https://api.semanticscholar.org/graph/v1/paper/search", params=params)
|
|
|
|
|
|
|
|
|
|
| 544 |
if r.status_code != 200:
|
| 545 |
_safe_metrics_bucket("errors", f"semantic_{r.status_code}")
|
| 546 |
return {"error": f"Semantic Scholar API: {r.status_code}", "results": [], "source": "Semantic Scholar"}
|
|
|
|
| 547 |
data = r.json()
|
| 548 |
results = []
|
| 549 |
for paper in data.get("data", []):
|
|
|
|
| 563 |
"_source": "Semantic Scholar",
|
| 564 |
})
|
| 565 |
return {"total": data.get("total", 0), "results": results, "source": "Semantic Scholar"}
|
|
|
|
| 566 |
except Exception as exc:
|
| 567 |
logger.error("Semantic Scholar search error: %s", exc)
|
| 568 |
_safe_metrics_bucket("errors", "semantic_exception")
|