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CellPilot / SAMHI /resources /CellViT /example /preprocessing_example.yaml

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# dataset paths
wsi_paths: ./example/TCGA-V5-A7RE-11A-01-TS1.57401526-EF9E-49AC-8FF6-B4F9652311CE.svs
output_path: ./example/output/preprocessing

# basic setups
patch_size: 1024
patch_overlap: 6.25
target_mag: 40
processes: 8
overwrite: True

# macenko stain normalization
normalize_stains: True

# finding patches
min_intersection_ratio: 0.05

	# dataset paths
	wsi_paths: ./example/TCGA-V5-A7RE-11A-01-TS1.57401526-EF9E-49AC-8FF6-B4F9652311CE.svs
	output_path: ./example/output/preprocessing

	# basic setups
	patch_size: 1024
	patch_overlap: 6.25
	target_mag: 40
	processes: 8
	overwrite: True

	# macenko stain normalization
	normalize_stains: True

	# finding patches
	min_intersection_ratio: 0.05