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| # -*- coding: utf-8 -*- | |
| # Main entry point for patch-preprocessing | |
| # | |
| # @ Fabian Hörst, fabian.hoerst@uk-essen.de | |
| # Institute for Artifical Intelligence in Medicine, | |
| # University Medicine Essen | |
| import inspect | |
| import logging | |
| import os | |
| import sys | |
| logger = logging.getLogger() | |
| logger.addHandler(logging.NullHandler()) | |
| currentdir = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe()))) | |
| parentdir = os.path.dirname(currentdir) | |
| sys.path.insert(0, parentdir) | |
| parentdir = os.path.dirname(parentdir) | |
| sys.path.insert(0, parentdir) | |
| from preprocessing.patch_extraction.src.cli import PreProcessingParser | |
| from preprocessing.patch_extraction.src.patch_extraction import PreProcessor | |
| from utils.tools import close_logger | |
| if __name__ == "__main__": | |
| configuration_parser = PreProcessingParser() | |
| configuration, logger = configuration_parser.get_config() | |
| configuration_parser.store_config() | |
| slide_processor = PreProcessor(slide_processor_config=configuration) | |
| slide_processor.sample_patches_dataset() | |
| logger.info("Finished Preprocessing.") | |
| close_logger(logger) | |