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| # -*- coding: utf-8 -*- | |
| import inspect | |
| import logging | |
| import os | |
| import sys | |
| logger = logging.getLogger() | |
| logger.addHandler(logging.NullHandler()) | |
| currentdir = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe()))) | |
| parentdir = os.path.dirname(currentdir) | |
| sys.path.insert(0, parentdir) | |
| parentdir = os.path.dirname(parentdir) | |
| sys.path.insert(0, parentdir) | |
| parentdir = os.path.dirname(parentdir) | |
| sys.path.insert(0, parentdir) | |
| from preprocessing.patch_extraction.src.cli import MacenkoParser | |
| from preprocessing.patch_extraction.src.patch_extraction import PreProcessor | |
| if __name__ == "__main__": | |
| configuration_parser = MacenkoParser() | |
| configuration, logger = configuration_parser.get_config() | |
| slide_processor = PreProcessor(slide_processor_config=configuration) | |
| slide_processor.save_normalization_vector( | |
| wsi_file=configuration.wsi_paths, save_json_path=configuration.save_json_path | |
| ) | |
| logger.info("Finished Macenko Vector Calculation!") | |