protbert-embedding-comparison / comparison_table.csv
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ProtBERT embedding comparison
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Embedding,Accuracy,Precision,Recall,F1,MCC,ROC_AUC,PR_AUC
mean_max,0.992 ± 0.003,0.991 ± 0.009,0.984 ± 0.016,0.987 ± 0.004,0.981 ± 0.007,0.997 ± 0.005,0.997 ± 0.006
mean,0.985 ± 0.008,0.982 ± 0.024,0.975 ± 0.018,0.978 ± 0.011,0.967 ± 0.017,0.998 ± 0.002,0.996 ± 0.003
mean_l11,0.985 ± 0.009,0.975 ± 0.017,0.981 ± 0.017,0.978 ± 0.013,0.967 ± 0.019,0.998 ± 0.003,0.997 ± 0.004
max,0.985 ± 0.007,0.987 ± 0.013,0.968 ± 0.022,0.978 ± 0.011,0.967 ± 0.016,0.995 ± 0.007,0.994 ± 0.007
mean_last4,0.983 ± 0.011,0.969 ± 0.024,0.981 ± 0.013,0.975 ± 0.017,0.962 ± 0.025,0.996 ± 0.007,0.996 ± 0.007
cls_mean,0.974 ± 0.019,0.952 ± 0.045,0.972 ± 0.017,0.962 ± 0.027,0.942 ± 0.041,0.997 ± 0.004,0.994 ± 0.005
baseline_dpc,0.947 ± 0.017,0.881 ± 0.036,0.975 ± 0.018,0.925 ± 0.023,0.888 ± 0.035,0.990 ± 0.007,0.986 ± 0.009
cls,0.947 ± 0.024,0.916 ± 0.052,0.931 ± 0.041,0.922 ± 0.034,0.884 ± 0.052,0.984 ± 0.007,0.975 ± 0.011
baseline_aac,0.882 ± 0.038,0.768 ± 0.066,0.937 ± 0.040,0.842 ± 0.046,0.761 ± 0.070,0.971 ± 0.014,0.945 ± 0.031