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Running on Zero
Running on Zero
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093748c | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 | import os
import pickle
from pathlib import Path
from setup.configProcessor import get_cache_dir, do_logging
def setup_chache():
cache_directory = get_cache_dir()
if not Path(cache_directory).exists():
Path(cache_directory).mkdir(parents=True, exist_ok=True)
distance_matrix_directory_path = os.path.join(cache_directory, "distance_matrices")
Path(distance_matrix_directory_path).mkdir(parents=True, exist_ok=True)
def cache_distance_matrix(protein_id, distance_matrix):
distance_matrix_directory_path = os.path.join(get_cache_dir(), "distance_matrices")
distance_matrix_file_path = os.path.join(distance_matrix_directory_path, f"{protein_id}.p")
pickle.dump(distance_matrix, open(distance_matrix_file_path, "wb"))
def load_distance_matrix(protein_id):
distance_matrix_directory_path = os.path.join(get_cache_dir(), "distance_matrices")
distance_matrix_file_path = os.path.join(distance_matrix_directory_path, f"{protein_id}.p")
if Path(distance_matrix_file_path).exists():
return pickle.load(open( distance_matrix_file_path, "rb"))
else:
if do_logging():
print(f"No cached distance matrix available for {protein_id}. Distance matrix will be computed.")
return None
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