Spaces:
Runtime error
Runtime error
File size: 16,989 Bytes
bf20cb7 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 | #include <pybind11/pybind11.h>
#include <pybind11/numpy.h>
#include <pybind11/stl.h>
#include "wayy_db/wayy_db.hpp"
#include <any>
namespace py = pybind11;
// GIL release guard for concurrent read operations
using release_gil = py::call_guard<py::gil_scoped_release>;
using namespace wayy_db;
// Namespace alias to avoid collision with local variable
namespace wdb_ops = wayy_db::ops;
// Helper to convert numpy dtype to WayyDB DType
DType numpy_dtype_to_wayy(py::dtype dt) {
if (dt.is(py::dtype::of<int64_t>())) return DType::Int64;
if (dt.is(py::dtype::of<double>())) return DType::Float64;
if (dt.is(py::dtype::of<uint32_t>())) return DType::Symbol;
if (dt.is(py::dtype::of<uint8_t>())) return DType::Bool;
throw std::runtime_error("Unsupported numpy dtype");
}
// Helper to get numpy dtype from WayyDB DType
py::dtype wayy_dtype_to_numpy(DType dt) {
switch (dt) {
case DType::Int64:
case DType::Timestamp:
case DType::Decimal6:
return py::dtype::of<int64_t>();
case DType::Float64:
return py::dtype::of<double>();
case DType::Symbol:
return py::dtype::of<uint32_t>();
case DType::Bool:
return py::dtype::of<uint8_t>();
case DType::String:
throw std::runtime_error("String columns use StringColumn, not numpy");
}
throw std::runtime_error("Unknown dtype");
}
// Helper: convert Python dict to std::unordered_map<string, std::any>
std::unordered_map<std::string, std::any> py_dict_to_any_map(
py::dict d, Table& table) {
std::unordered_map<std::string, std::any> result;
for (auto& [key, val] : d) {
std::string col_name = py::str(key);
DType dt = table.column_dtype(col_name);
if (dt == DType::String) {
result[col_name] = std::string(py::str(val));
} else if (dt == DType::Int64 || dt == DType::Timestamp || dt == DType::Decimal6) {
result[col_name] = py::cast<int64_t>(val);
} else if (dt == DType::Float64) {
result[col_name] = py::cast<double>(val);
} else if (dt == DType::Symbol) {
result[col_name] = py::cast<uint32_t>(val);
} else if (dt == DType::Bool) {
result[col_name] = py::cast<uint8_t>(val);
}
}
return result;
}
PYBIND11_MODULE(_core, m, py::mod_gil_not_used()) {
m.doc() = "WayyDB: High-performance columnar time-series database (free-threading safe)";
// DType enum
py::enum_<DType>(m, "DType")
.value("Int64", DType::Int64)
.value("Float64", DType::Float64)
.value("Timestamp", DType::Timestamp)
.value("Symbol", DType::Symbol)
.value("Bool", DType::Bool)
.value("String", DType::String)
.value("Decimal6", DType::Decimal6)
.export_values();
// Exceptions
py::register_exception<WayyException>(m, "WayyException");
py::register_exception<ColumnNotFound>(m, "ColumnNotFound");
py::register_exception<TypeMismatch>(m, "TypeMismatch");
py::register_exception<InvalidOperation>(m, "InvalidOperation");
// Column class
py::class_<Column>(m, "Column")
.def_property_readonly("name", &Column::name)
.def_property_readonly("dtype", &Column::dtype)
.def_property_readonly("size", &Column::size)
.def("__len__", &Column::size)
.def("to_numpy", [](Column& self) -> py::array {
py::dtype dt = wayy_dtype_to_numpy(self.dtype());
return py::array(dt, {self.size()}, {dtype_size(self.dtype())},
self.data(), py::cast(self));
}, py::return_value_policy::reference_internal,
"Zero-copy view as numpy array")
.def("is_valid", &Column::is_valid, py::arg("row"),
"Check if row is valid (not null/deleted)")
.def("count_valid", &Column::count_valid,
"Count non-null/non-deleted rows");
// StringColumn class
py::class_<StringColumn>(m, "StringColumn")
.def(py::init<std::string>(), py::arg("name") = "")
.def_property_readonly("name", &StringColumn::name)
.def_property_readonly("dtype", &StringColumn::dtype)
.def_property_readonly("size", &StringColumn::size)
.def("__len__", &StringColumn::size)
.def("get", &StringColumn::get, py::arg("row"),
"Get string at row index")
.def("append", &StringColumn::append, py::arg("val"),
"Append a string value")
.def("set", &StringColumn::set, py::arg("row"), py::arg("val"),
"Set string at row index")
.def("is_valid", &StringColumn::is_valid, py::arg("row"))
.def("count_valid", &StringColumn::count_valid)
.def("to_list", &StringColumn::to_vector,
"Get all strings as a Python list");
// Table class
py::class_<Table>(m, "Table")
.def(py::init<std::string>(), py::arg("name") = "")
.def_property_readonly("name", &Table::name)
.def_property_readonly("num_rows", &Table::num_rows)
.def_property_readonly("num_columns", &Table::num_columns)
.def_property_readonly("sorted_by", [](const Table& t) -> py::object {
if (t.sorted_by()) return py::cast(*t.sorted_by());
return py::none();
})
.def_property_readonly("primary_key", [](const Table& t) -> py::object {
if (t.primary_key()) return py::cast(*t.primary_key());
return py::none();
})
.def("__len__", &Table::num_rows)
.def("has_column", &Table::has_column)
.def("column", py::overload_cast<const std::string&>(&Table::column),
py::return_value_policy::reference_internal)
.def("__getitem__", py::overload_cast<const std::string&>(&Table::column),
py::return_value_policy::reference_internal)
.def("has_string_column", &Table::has_string_column)
.def("string_column", py::overload_cast<const std::string&>(&Table::string_column),
py::return_value_policy::reference_internal)
.def("column_dtype", &Table::column_dtype, py::arg("name"),
"Get the DType of any column (fixed or string)")
.def("column_names", &Table::column_names)
.def("set_sorted_by", &Table::set_sorted_by)
.def("set_primary_key", &Table::set_primary_key, py::arg("col_name"),
"Set the primary key column and build hash index")
.def("rebuild_index", &Table::rebuild_index,
"Rebuild the primary key hash index")
// CRUD operations
.def("append_row", [](Table& self, py::dict values) -> size_t {
auto map = py_dict_to_any_map(values, self);
return self.append_row(map);
}, py::arg("values"), "Append a row from a dict, returns row index")
.def("update_row", [](Table& self, py::object pk, py::dict values) -> bool {
auto map = py_dict_to_any_map(values, self);
if (py::isinstance<py::int_>(pk)) {
return self.update_row(py::cast<int64_t>(pk), map);
} else {
return self.update_row(std::string(py::str(pk)), map);
}
}, py::arg("pk"), py::arg("values"), "Update row by primary key")
.def("delete_row", [](Table& self, py::object pk) -> bool {
if (py::isinstance<py::int_>(pk)) {
return self.delete_row(py::cast<int64_t>(pk));
} else {
return self.delete_row(std::string(py::str(pk)));
}
}, py::arg("pk"), "Soft-delete row by primary key")
.def("find_row", [](const Table& self, py::object pk) -> py::object {
std::optional<size_t> row;
if (py::isinstance<py::int_>(pk)) {
row = self.find_row(py::cast<int64_t>(pk));
} else {
row = self.find_row(std::string(py::str(pk)));
}
if (row) return py::cast(*row);
return py::none();
}, py::arg("pk"), "Find row index by primary key")
.def("where_eq", [](const Table& self, const std::string& col, py::object val) -> py::list {
std::vector<size_t> rows;
DType dt = self.column_dtype(col);
if (dt == DType::String) {
rows = self.where_eq(col, std::string(py::str(val)));
} else {
rows = self.where_eq(col, py::cast<int64_t>(val));
}
py::list result;
for (auto r : rows) result.append(r);
return result;
}, py::arg("col"), py::arg("val"), "Filter rows where col == val")
.def("compact", &Table::compact,
"Physically remove deleted rows and rebuild index")
.def("save", &Table::save)
.def_static("load", &Table::load)
.def_static("mmap", &Table::mmap)
.def("add_column_from_numpy", [](Table& self, const std::string& name,
py::array arr, DType dtype) {
py::buffer_info buf = arr.request();
if (buf.ndim != 1) {
throw std::runtime_error("Array must be 1-dimensional");
}
// Copy data into owned buffer
size_t elem_size = dtype_size(dtype);
std::vector<uint8_t> data(buf.size * elem_size);
std::memcpy(data.data(), buf.ptr, data.size());
self.add_column(Column(name, dtype, std::move(data)));
}, py::arg("name"), py::arg("array"), py::arg("dtype"))
.def("add_string_column_from_list", [](Table& self, const std::string& name,
py::list strings) {
StringColumn sc(name);
for (auto& item : strings) {
if (item.is_none()) {
sc.append_null();
} else {
sc.append(std::string(py::str(item)));
}
}
self.add_string_column(std::move(sc));
}, py::arg("name"), py::arg("strings"),
"Add a string column from a Python list")
.def("to_dict", [](Table& self) -> py::dict {
py::dict result;
for (const auto& col_name : self.column_names()) {
if (self.has_string_column(col_name)) {
auto& scol = self.string_column(col_name);
result[py::cast(col_name)] = py::cast(scol.to_vector());
} else {
Column& col = self.column(col_name);
py::dtype dt = wayy_dtype_to_numpy(col.dtype());
// Make a copy for the dict
py::array arr(dt, {col.size()}, {dtype_size(col.dtype())}, col.data());
result[py::cast(col_name)] = arr.attr("copy")();
}
}
return result;
});
// Database class
py::class_<Database>(m, "Database")
.def(py::init<>())
.def(py::init<const std::string&>(), py::arg("path"))
.def_property_readonly("path", &Database::path)
.def_property_readonly("is_persistent", &Database::is_persistent)
.def("tables", &Database::tables)
.def("has_table", &Database::has_table)
.def("table", &Database::table, py::return_value_policy::reference_internal)
.def("__getitem__", &Database::table, py::return_value_policy::reference_internal)
.def("create_table", &Database::create_table, py::return_value_policy::reference_internal)
.def("add_table", [](Database& db, Table& table) {
db.add_table(std::move(table));
})
.def("drop_table", &Database::drop_table)
.def("save", &Database::save)
.def("refresh", &Database::refresh)
.def("checkpoint", &Database::checkpoint,
"Flush WAL, save all tables, truncate WAL");
// Operations submodule
py::module_ ops_mod = m.def_submodule("ops", "WayyDB operations");
// Aggregations - use lambdas to avoid overload issues
// All aggregations release the GIL for concurrent execution
ops_mod.def("sum", [](const Column& col) { return wdb_ops::sum(col); },
py::arg("col"), release_gil(), "Sum of column values");
ops_mod.def("avg", [](const Column& col) { return wdb_ops::avg(col); },
py::arg("col"), release_gil(), "Average of column values");
ops_mod.def("min", [](const Column& col) { return wdb_ops::min_val(col); },
py::arg("col"), release_gil(), "Minimum value");
ops_mod.def("max", [](const Column& col) { return wdb_ops::max_val(col); },
py::arg("col"), release_gil(), "Maximum value");
ops_mod.def("std", [](const Column& col) { return wdb_ops::std_dev(col); },
py::arg("col"), release_gil(), "Standard deviation");
// Joins - release GIL for concurrent execution
ops_mod.def("aj", &wdb_ops::aj,
py::arg("left"), py::arg("right"), py::arg("on"), py::arg("as_of"),
release_gil(),
"As-of join: find most recent right row for each left row");
ops_mod.def("wj", &wdb_ops::wj,
py::arg("left"), py::arg("right"), py::arg("on"), py::arg("as_of"),
py::arg("window_before"), py::arg("window_after"),
release_gil(),
"Window join: find all right rows within time window");
// Window functions (returning numpy arrays)
// These compute with GIL released, then briefly reacquire to create numpy array
ops_mod.def("mavg", [](Column& col, size_t window) -> py::array_t<double> {
std::vector<double> result;
{
py::gil_scoped_release release;
result = wdb_ops::mavg(col.as_float64(), window);
}
return py::array_t<double>(result.size(), result.data());
}, py::arg("col"), py::arg("window"), "Moving average");
ops_mod.def("msum", [](Column& col, size_t window) -> py::array_t<double> {
std::vector<double> result;
{
py::gil_scoped_release release;
result = wdb_ops::msum(col.as_float64(), window);
}
return py::array_t<double>(result.size(), result.data());
}, py::arg("col"), py::arg("window"), "Moving sum");
ops_mod.def("mstd", [](Column& col, size_t window) -> py::array_t<double> {
std::vector<double> result;
{
py::gil_scoped_release release;
result = wdb_ops::mstd(col.as_float64(), window);
}
return py::array_t<double>(result.size(), result.data());
}, py::arg("col"), py::arg("window"), "Moving standard deviation");
ops_mod.def("mmin", [](Column& col, size_t window) -> py::array_t<double> {
std::vector<double> result;
{
py::gil_scoped_release release;
result = wdb_ops::mmin(col.as_float64(), window);
}
return py::array_t<double>(result.size(), result.data());
}, py::arg("col"), py::arg("window"), "Moving minimum");
ops_mod.def("mmax", [](Column& col, size_t window) -> py::array_t<double> {
std::vector<double> result;
{
py::gil_scoped_release release;
result = wdb_ops::mmax(col.as_float64(), window);
}
return py::array_t<double>(result.size(), result.data());
}, py::arg("col"), py::arg("window"), "Moving maximum");
ops_mod.def("ema", [](Column& col, double alpha) -> py::array_t<double> {
std::vector<double> result;
{
py::gil_scoped_release release;
result = wdb_ops::ema(col.as_float64(), alpha);
}
return py::array_t<double>(result.size(), result.data());
}, py::arg("col"), py::arg("alpha"), "Exponential moving average");
ops_mod.def("diff", [](Column& col, size_t periods) -> py::array_t<double> {
std::vector<double> result;
{
py::gil_scoped_release release;
result = wdb_ops::diff(col.as_float64(), periods);
}
return py::array_t<double>(result.size(), result.data());
}, py::arg("col"), py::arg("periods") = 1, "Difference between consecutive values");
ops_mod.def("pct_change", [](Column& col, size_t periods) -> py::array_t<double> {
std::vector<double> result;
{
py::gil_scoped_release release;
result = wdb_ops::pct_change(col.as_float64(), periods);
}
return py::array_t<double>(result.size(), result.data());
}, py::arg("col"), py::arg("periods") = 1, "Percent change");
ops_mod.def("shift", [](Column& col, int64_t n) -> py::array_t<double> {
std::vector<double> result;
{
py::gil_scoped_release release;
result = wdb_ops::shift(col.as_float64(), n);
}
return py::array_t<double>(result.size(), result.data());
}, py::arg("col"), py::arg("n"), "Shift values by n positions");
// Version info
m.attr("__version__") = "0.2.0";
}
|