data/taxonomy/coding_systems.csv

system_id,title,kind,edition_of,short_label,offered,note
figo_endo/1988,FIGO endometrial staging (1988),staging,figo_endo,FIGO 1988,false,"Substages stage I by myometrial depth: IA endometrium only, IB less than half, IC half or more."
figo_endo/2009,FIGO endometrial staging (2009),staging,figo_endo,FIGO 2009,true,"Collapses 1988 IA and IB into IA; 1988 IC into IB."
figo_endo/2023,FIGO endometrial staging (2023),staging,figo_endo,FIGO 2023,true,"Folds histotype aggressiveness, LVSI extent and molecular class into the stage."
cap_uterus/5.1.0.0,CAP endometrium protocol v5.1.0.0,checklist,,CAP,false,The synoptic checklist the registry transcribes.
who_fgt/2020,WHO classification of female genital tumours (2020),morphology,,WHO 2020,false,Histologic type value set.
ajcc/8,AJCC cancer staging manual 8th edition,staging,,AJCC 8,false,pT/pN/pM categories reproduced by CAP.
icdo3/3.2,ICD-O-3.2 morphology,morphology,,ICD-O-3,false,Morphology axis carried by the GDC dictionary.
promise/2017,ProMisE molecular classifier (2017),molecular,,ProMisE,false,Surrogate-marker four-class scheme.
tcga_ucec/2013,TCGA UCEC molecular groups (2013),molecular,,TCGA,false,Sequencing-based four groups.
gdc/dictionary,GDC data dictionary,dictionary,,GDC,false,Enumerated stage and morphology values.
fhir_dar/1.0.0,HL7 dataAbsentReason code system,absent_reason,,FHIR,false,Codes for a value that is absent.
endopath/1,Local extension system,extension,,Local,false,Corpus surface forms that no reference standard names.
iccr_endo/5,ICCR endometrial dataset 5th edition,checklist,,ICCR,false,Uses a three-vessel cut-off for substantial LVSI.
endopath/derived,Registry-declared derived value sets,derived_value_set,,Derived,false,"States the codes each derived or gated dimension may take. The loader checks a crosswalk precondition, a threshold band and an algorithm result against these rows."
endopath/relation,Crosswalk relation vocabulary,relation_vocabulary,,Relation,false,"States how an edge's source relates to what it points at, and the predicate each relation writes into crosswalk.csv. The A3 pass draws the field_to_concept rows; crosswalk.csv takes any row's predicate."