| #!/bin/bash |
| |
| |
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| set -e |
| PROJ="/data/ralmadamonter/llm_project" |
| DASH="/data/ralmadamonter/llm_dashboard/data" |
|
|
| echo "=== Copying evaluation results ===" |
| mkdir -p "$DASH/evaluation_llm_results" |
| cp -r "$PROJ/jsons/evaluation_llm_results/." "$DASH/evaluation_llm_results/" |
|
|
| echo "=== Copying SAMs data ===" |
| mkdir -p "$DASH/sams" |
| cp "$PROJ/jsons/sams/extracted_methods_sams_metrics.json" "$DASH/sams/" |
| cp "$PROJ/jsons/sams/sam_pdfs_enzymology.json" "$DASH/sams/" |
| cp "$PROJ/jsons/sams/filtered.json" "$DASH/sams/" |
|
|
| echo "=== Copying azoreductases GT ===" |
| mkdir -p "$DASH/azoreductases_gt" |
| cp "$PROJ/jsons/azoreductases_gt/azo_metadata.json" "$DASH/azoreductases_gt/" |
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|
| echo "=== Copying confusion matrix ===" |
| mkdir -p "$DASH/confusion_matrix" |
| cp "$PROJ/plots/classification_confusion_matrix/confusion_matrix_counts.csv" "$DASH/confusion_matrix/" |
|
|
| echo "=== Copying clustering (used files only — skipping .pkl, .png, .svg) ===" |
| find "$DASH/clustering" -name "*.pkl" -delete |
| find "$DASH/clustering" -name "*.png" -delete |
| find "$DASH/clustering" -name "*.svg" -delete |
| find "$DASH/clustering" -name "*_clusters_distribution_*.html" -delete |
| |
| find "$DASH/clustering" -name "*.csv" \ |
| ! -name "*_ALL_FIELDS.csv" \ |
| ! -name "*_FIELD_CLUSTER_METRICS.csv" \ |
| -delete |
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|
| echo "" |
| echo "Done. Final data size:" |
| du -sh "$DASH" |
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|
