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In-Memory FAISS HNSW Vector Indexing and Search.
Features:
- In-Memory HNSW (IndexHNSWFlat) with cosine similarity (METRIC_INNER_PRODUCT on normalized vectors).
- M=32, efConstruction=200, efSearch=64.
- Single combined index per strategy spanning all configured languages (config.LANGUAGES).
- Metadata-based language pre-filtering.
- Corpus centroid computation and persistence for pre-retrieval off-topic guardrails.
"""
import json
import logging
import os
import sys
from pathlib import Path
from typing import Any, Dict, List, Optional, Tuple
import faiss
import numpy as np
# Ensure project root is in sys.path
sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
import config
from doc_chunking.metadata import Chunk, filter_chunks_by_language
from doc_chunking.passage_native import process_corpus_passage_native
from doc_chunking.sentence_window import process_longdocs_sentence_window
from doc_chunking.semantic import process_longdocs_semantic
from vector_search.embed import get_embedder
logging.basicConfig(level=logging.INFO, format="%(asctime)s [%(levelname)s] %(message)s", force=True)
logger = logging.getLogger(__name__)
class StrategyVectorIndex:
"""
Manages an in-memory FAISS HNSW index and aligned metadata for a specific chunking strategy.
"""
def __init__(
self,
strategy_name: str,
dim: int = config.EMBEDDING_DIM,
m: int = config.HNSW_M,
ef_construction: int = config.HNSW_EF_CONSTRUCTION,
ef_search: int = config.HNSW_EF_SEARCH,
):
self.strategy_name = strategy_name
self.dim = dim
self.m = m
self.ef_construction = ef_construction
self.ef_search = ef_search
# FAISS HNSW with inner product (cosine similarity on unit-normalized vectors)
self.index = faiss.IndexHNSWFlat(self.dim, self.m, faiss.METRIC_INNER_PRODUCT)
self.index.hnsw.efConstruction = self.ef_construction
self.index.hnsw.efSearch = self.ef_search
self.chunks: List[Chunk] = []
# Precomputed index mappings for ultra-fast language filtering
self.lang_to_indices: Dict[str, List[int]] = {}
@property
def size(self) -> int:
"""Returns the number of indexed chunks."""
return len(self.chunks)
def add_chunks(self, chunks: List[Chunk], vectors: np.ndarray):
"""Add chunks and precomputed vectors to index."""
if len(chunks) == 0:
return
if len(chunks) != len(vectors):
raise ValueError(f"Chunk count ({len(chunks)}) != vector count ({len(vectors)})")
start_idx = len(self.chunks)
self.chunks.extend(chunks)
# Build language index mapping
for idx_offset, c in enumerate(chunks):
global_idx = start_idx + idx_offset
lang = c.source_lang.lower()
if lang not in self.lang_to_indices:
self.lang_to_indices[lang] = []
self.lang_to_indices[lang].append(global_idx)
self.index.add(np.ascontiguousarray(vectors, dtype=np.float32))
logger.info(
f"Added {len(chunks)} chunks to '{self.strategy_name}' index. "
f"Total index size: {self.index.ntotal}."
)
def search(
self, query_vec: np.ndarray, target_lang: Optional[str] = None, top_k: int = 15
) -> List[Dict[str, Any]]:
"""
Search the index for query vector with optional language filtering.
"""
if self.index.ntotal == 0:
return []
# Ensure query_vec is 2D (1, dim)
if query_vec.ndim == 1:
query_vec = np.expand_dims(query_vec, axis=0)
# Query FAISS HNSW (optimized candidate search for sub-1ms traversal)
search_k = min(self.index.ntotal, max(400, top_k * 25) if target_lang else max(60, top_k * 3))
scores, indices = self.index.search(query_vec, search_k)
results: List[Dict[str, Any]] = []
target_lang_clean = target_lang.lower().strip() if target_lang else None
for score, idx in zip(scores[0], indices[0]):
if idx < 0 or idx >= len(self.chunks):
continue
chunk = self.chunks[idx]
# Apply language metadata pre-filter
if target_lang_clean and chunk.source_lang.lower() != target_lang_clean:
continue
results.append({
"chunk_id": chunk.chunk_id,
"text": chunk.text,
"score": float(score),
"source_lang": chunk.source_lang,
"chunk_strategy": chunk.chunk_strategy,
"source_query_ids": chunk.source_query_ids,
"doc_id": chunk.doc_id,
"context_window": chunk.context_window,
"metadata": chunk.metadata,
})
if len(results) >= top_k:
break
return results
def save(self, directory: Path):
"""Save FAISS index and chunk metadata to disk."""
directory.mkdir(parents=True, exist_ok=True)
index_file = directory / f"{self.strategy_name}.faiss"
meta_file = directory / f"{self.strategy_name}_meta.json"
faiss.write_index(self.index, str(index_file))
# Serialize chunk metadata
meta_data = {
"strategy_name": self.strategy_name,
"dim": self.dim,
"m": self.m,
"ef_construction": self.ef_construction,
"ef_search": self.ef_search,
"chunks": [c.model_dump() for c in self.chunks],
}
with open(meta_file, "w", encoding="utf-8") as f:
json.dump(meta_data, f, ensure_ascii=False)
logger.info(f"Saved index and metadata for '{self.strategy_name}' to {directory}")
@classmethod
def load(cls, directory: Path, strategy_name: str) -> "StrategyVectorIndex":
"""Load FAISS index and chunk metadata from disk."""
index_file = directory / f"{strategy_name}.faiss"
meta_file = directory / f"{strategy_name}_meta.json"
if not index_file.exists() or not meta_file.exists():
raise FileNotFoundError(f"Index or metadata file missing in {directory} for '{strategy_name}'")
with open(meta_file, "r", encoding="utf-8") as f:
meta_data = json.load(f)
inst = cls(
strategy_name=meta_data["strategy_name"],
dim=meta_data.get("dim", config.EMBEDDING_DIM),
m=meta_data.get("m", config.HNSW_M),
ef_construction=meta_data.get("ef_construction", config.HNSW_EF_CONSTRUCTION),
ef_search=meta_data.get("ef_search", config.HNSW_EF_SEARCH),
)
inst.index = faiss.read_index(str(index_file))
inst.index.hnsw.efSearch = inst.ef_search
# Reconstruct chunks and language mapping
inst.chunks = [Chunk(**c) for c in meta_data["chunks"]]
inst.lang_to_indices = {}
for idx, c in enumerate(inst.chunks):
lang = c.source_lang.lower()
if lang not in inst.lang_to_indices:
inst.lang_to_indices[lang] = []
inst.lang_to_indices[lang].append(idx)
logger.info(f"Loaded index '{strategy_name}' ({inst.index.ntotal} vectors) from {directory}")
return inst
class IndexManager:
"""
Manages all strategy indexes and off-topic centroid models for the pipeline.
"""
def __init__(self, index_dir: Path = config.INDEX_DIR):
self.index_dir = index_dir
self.indexes: Dict[str, StrategyVectorIndex] = {}
self.centroids: Dict[str, np.ndarray] = {} # lang -> centroid vector
self.global_centroid: Optional[np.ndarray] = None
self.embedder = get_embedder()
@staticmethod
def _iter_jsonl(path: Path, limit: Optional[int] = None):
"""Yield JSONL records without loading an entire corpus into memory."""
yielded = 0
with open(path, "r", encoding="utf-8") as handle:
for line_number, line in enumerate(handle, start=1):
if limit is not None and yielded >= limit:
break
if not line.strip():
continue
try:
record = json.loads(line)
except json.JSONDecodeError as exc:
logger.warning("Skipping malformed JSONL record %s:%s: %s", path, line_number, exc)
continue
yielded += 1
yield record
def _add_embedded_chunks(
self,
index: StrategyVectorIndex,
chunks: List[Chunk],
centroid_sums: Dict[str, np.ndarray],
centroid_counts: Dict[str, int],
) -> int:
"""Embed and add one bounded batch, updating centroid statistics online."""
if not chunks:
return 0
texts = [chunk.embed_text for chunk in chunks]
vectors = self.embedder.encode_passages(
texts,
batch_size=min(config.INDEX_BUILD_BATCH_SIZE, 128),
)
if len(vectors) != len(chunks):
raise RuntimeError(
f"Embedder returned {len(vectors)} vectors for {len(chunks)} chunks"
)
index.add_chunks(chunks, vectors)
for chunk, vector in zip(chunks, vectors):
lang = chunk.source_lang.lower()
if lang not in centroid_sums:
centroid_sums[lang] = np.zeros(index.dim, dtype=np.float64)
centroid_counts[lang] = 0
centroid_sums[lang] += vector.astype(np.float64, copy=False)
centroid_counts[lang] += 1
return len(chunks)
def build_all_indexes(self, max_passages_per_lang: Optional[int] = None):
"""
Build complete combined indexes for all configured languages.
``None`` means no per-language cap. Records are streamed from JSONL and
embedded in bounded batches, so the full corpus is indexed without the
previous implicit 700-record truncation or an all-corpus memory spike.
"""
if max_passages_per_lang is not None and max_passages_per_lang <= 0:
raise ValueError("max_passages_per_lang must be positive or None")
batch_size = max(1, int(getattr(config, "INDEX_BUILD_BATCH_SIZE", 512)))
logger.info(
"Building complete indexes for languages=%s (passage_limit=%s, batch_size=%s)",
config.LANGUAGES,
max_passages_per_lang if max_passages_per_lang is not None else "unlimited",
batch_size,
)
self.indexes = {}
self.centroids = {}
self.global_centroid = None
centroid_sums: Dict[str, np.ndarray] = {}
centroid_counts: Dict[str, int] = {}
passage_counts: Dict[str, int] = {}
longdoc_counts: Dict[str, int] = {}
# Passage-native index: stream each language corpus and add bounded batches.
passage_index = StrategyVectorIndex("passage_native")
passage_total = 0
for lang in config.LANGUAGES:
corpus_file = config.PROCESSED_DATA_DIR / f"{lang}_corpus.jsonl"
if not corpus_file.exists():
logger.warning("Corpus file %s not found; skipping language '%s'.", corpus_file, lang)
continue
batch_records: List[Dict[str, Any]] = []
lang_total = 0
for record in self._iter_jsonl(corpus_file, max_passages_per_lang):
batch_records.append(record)
if len(batch_records) >= batch_size:
chunks = process_corpus_passage_native(batch_records)
added = self._add_embedded_chunks(
passage_index, chunks, centroid_sums, centroid_counts
)
lang_total += added
logger.info("Language '%s': embedded %d chunks (lang total: %d)...", lang, added, lang_total)
batch_records.clear()
if batch_records:
chunks = process_corpus_passage_native(batch_records)
added = self._add_embedded_chunks(
passage_index, chunks, centroid_sums, centroid_counts
)
lang_total += added
logger.info("Language '%s': embedded final %d chunks (lang total: %d)...", lang, added, lang_total)
passage_total += lang_total
passage_counts[lang] = lang_total
logger.info("Finished indexing %s passage-native chunks for '%s'.", lang_total, lang)
if passage_total:
passage_index.save(self.index_dir)
self.indexes["passage_native"] = passage_index
self._save_centroids(centroid_sums, centroid_counts)
else:
logger.warning("No passage corpus records were indexed.")
# Long-document index: process one document at a time and embed bounded batches.
longdoc_index = StrategyVectorIndex("semantic_longdoc")
longdoc_total = 0
for lang in config.LANGUAGES:
longdoc_file = config.PROCESSED_DATA_DIR / f"{lang}_longdocs.jsonl"
if not longdoc_file.exists():
logger.info("Long-document file %s not found; skipping.", longdoc_file)
continue
pending_chunks: List[Chunk] = []
lang_total = 0
for record in self._iter_jsonl(longdoc_file):
pending_chunks.extend(process_longdocs_sentence_window([record]))
pending_chunks.extend(process_longdocs_semantic([record]))
if len(pending_chunks) >= batch_size:
lang_total += self._add_embedded_chunks(
longdoc_index, pending_chunks, {}, {}
)
pending_chunks.clear()
if pending_chunks:
lang_total += self._add_embedded_chunks(
longdoc_index, pending_chunks, {}, {}
)
longdoc_total += lang_total
longdoc_counts[lang] = lang_total
logger.info("Indexed %s long-document chunks for '%s'.", lang_total, lang)
if longdoc_total:
longdoc_index.save(self.index_dir)
self.indexes["semantic_longdoc"] = longdoc_index
else:
logger.warning("No long-document records were indexed.")
manifest = {
"languages": list(config.LANGUAGES),
"full_corpus": max_passages_per_lang is None,
"passage_counts": passage_counts,
"longdoc_counts": longdoc_counts,
"embedding_model": config.EMBEDDING_MODEL_NAME,
}
with open(self.index_dir / "index_manifest.json", "w", encoding="utf-8") as handle:
json.dump(manifest, handle, ensure_ascii=False, indent=2)
logger.info(
"Completed full indexing: %s passage-native and %s long-document chunks.",
passage_total,
longdoc_total,
)
def _save_centroids(
self, centroid_sums: Dict[str, np.ndarray], centroid_counts: Dict[str, int]
):
"""Normalize and persist online per-language and global centroid statistics."""
if not centroid_counts:
return
centroids_dict: Dict[str, List[float]] = {}
total_sum = np.zeros(config.EMBEDDING_DIM, dtype=np.float64)
total_count = 0
self.centroids = {}
for lang in config.LANGUAGES:
if lang not in centroid_counts:
continue
mean_vec = centroid_sums[lang] / centroid_counts[lang]
norm_vec = (mean_vec / (np.linalg.norm(mean_vec) + 1e-12)).astype(np.float32)
centroids_dict[lang] = norm_vec.tolist()
self.centroids[lang] = norm_vec
total_sum += centroid_sums[lang]
total_count += centroid_counts[lang]
global_mean = total_sum / max(total_count, 1)
global_norm = (global_mean / (np.linalg.norm(global_mean) + 1e-12)).astype(np.float32)
centroids_dict["global"] = global_norm.tolist()
self.global_centroid = global_norm
centroid_file = self.index_dir / "centroids.json"
with open(centroid_file, "w", encoding="utf-8") as handle:
json.dump(centroids_dict, handle, ensure_ascii=False)
logger.info("Saved corpus centroids to %s", centroid_file)
def _compute_and_save_centroids(self, chunks: List[Chunk], vectors: np.ndarray):
"""Compatibility helper for callers that already hold one vector batch."""
sums: Dict[str, np.ndarray] = {}
counts: Dict[str, int] = {}
for chunk, vector in zip(chunks, vectors):
lang = chunk.source_lang.lower()
sums.setdefault(lang, np.zeros(vectors.shape[1], dtype=np.float64))
sums[lang] += vector.astype(np.float64, copy=False)
counts[lang] = counts.get(lang, 0) + 1
self._save_centroids(sums, counts)
def load_all_indexes(self):
"""Loads all existing strategy indexes and centroids from disk into memory with auto-rebuild fallback."""
loaded_ok = True
for strategy in ["passage_native", "semantic_longdoc"]:
try:
idx = StrategyVectorIndex.load(self.index_dir, strategy)
if idx.index.ntotal == 0:
raise ValueError(f"Index '{strategy}' has 0 vectors.")
self.indexes[strategy] = idx
except Exception as e:
logger.warning(f"Could not load index '{strategy}': {e}")
loaded_ok = False
# Load centroids
centroid_file = self.index_dir / "centroids.json"
if centroid_file.exists():
try:
with open(centroid_file, "r", encoding="utf-8") as f:
c_data = json.load(f)
for k, v in c_data.items():
arr = np.array(v, dtype=np.float32)
if k == "global":
self.global_centroid = arr
else:
self.centroids[k] = arr
logger.info(f"Loaded centroids for: {list(self.centroids.keys())}")
except Exception as e:
logger.warning(f"Failed loading centroids: {e}")
loaded_ok = False
else:
loaded_ok = False
# Rebuild stale artifacts produced by old languages or missing manifest.
manifest_file = self.index_dir / "index_manifest.json"
manifest_ok = False
if manifest_file.exists():
try:
with open(manifest_file, "r", encoding="utf-8") as handle:
manifest = json.load(handle)
manifest_ok = set(manifest.get("languages", [])) == set(config.LANGUAGES)
except Exception as exc:
logger.warning("Failed loading index manifest: %s", exc)
else:
logger.info("Index manifest is missing; treating existing indexes as stale.")
if not loaded_ok or not manifest_ok or "passage_native" not in self.indexes or self.indexes["passage_native"].index.ntotal == 0:
logger.info("[IndexManager] Auto-recovering: building complete indexes from corpus...")
limit = getattr(config, "MAX_INDEX_PASSAGES_PER_LANG", None)
self.build_all_indexes(max_passages_per_lang=limit)
_INDEX_MANAGER: Optional[IndexManager] = None
def get_index_manager() -> Any:
"""Singleton getter for IndexManager (supports FAISS and Qdrant vector backends)."""
global _INDEX_MANAGER
if getattr(config, "VECTOR_STORE_BACKEND", "faiss").lower() == "qdrant":
from vector_search.index_qdrant import get_qdrant_manager
return get_qdrant_manager()
if _INDEX_MANAGER is None:
_INDEX_MANAGER = IndexManager()
_INDEX_MANAGER.load_all_indexes()
return _INDEX_MANAGER
if __name__ == "__main__":
manager = IndexManager()
manager.build_all_indexes(max_passages_per_lang=None)
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