Spaces:
Sleeping
Sleeping
Rishit Pant commited on
Commit ·
a91b42a
1
Parent(s): 5976a7b
Chroma cloud setup (#11)
Browse files- src/ingest.py +35 -39
- src/retrieve.py +27 -4
- src/tracing.py +2 -3
src/ingest.py
CHANGED
|
@@ -1,10 +1,14 @@
|
|
|
|
|
| 1 |
import re
|
| 2 |
from pathlib import Path
|
|
|
|
| 3 |
from langchain_core.documents import Document
|
| 4 |
from langchain_text_splitters import MarkdownHeaderTextSplitter, RecursiveCharacterTextSplitter
|
| 5 |
from langchain_chroma import Chroma
|
| 6 |
from langchain_huggingface import HuggingFaceEmbeddings
|
| 7 |
|
|
|
|
|
|
|
| 8 |
DATA_DIR = Path("data")
|
| 9 |
DB_DIR = "db"
|
| 10 |
COLLECTION_NAME = "handbook_docs"
|
|
@@ -13,6 +17,25 @@ EMBED_MODEL = "BAAI/bge-small-en-v1.5"
|
|
| 13 |
CHUNK_SIZE = 2000
|
| 14 |
CHUNK_OVERLAP = 200
|
| 15 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 16 |
HEADERS_TO_SPLIT = [
|
| 17 |
("#", "h1"),
|
| 18 |
("##", "h2"),
|
|
@@ -49,37 +72,15 @@ def html_tables_to_markdown(text: str) -> str:
|
|
| 49 |
def clean_markdown(raw_text: str) -> str:
|
| 50 |
noise_patterns = [
|
| 51 |
r'\d{1,2}/\d{1,2}/\d{2,4},\s+\d{1,2}:\d{2}\s+[AP]M[^\n]*',
|
| 52 |
-
|
| 53 |
-
# Full footer form: "Google Docs Published using Google Docs"
|
| 54 |
r'Google Docs(?:\s+icon|\s+logo)?\s+Published using Google Docs[^\n]*',
|
| 55 |
-
|
| 56 |
-
# Fragment form that appears mid-chunk after splitting:
|
| 57 |
-
# " 10/66 info icon Published using Google Docs IITM BS Degree ..."
|
| 58 |
r'\d+/\d+\s+info\s+icon\s+Published\s+using\s+Google\s+Docs[^\n]*',
|
| 59 |
-
|
| 60 |
-
# Standalone "Published using Google Docs" anywhere
|
| 61 |
r'Published\s+using\s+Google\s+Docs[^\n]*',
|
| 62 |
-
|
| 63 |
-
# "info icon" artifact on its own or leading a sentence
|
| 64 |
r'\binfo\s+icon\b[^\n]*',
|
| 65 |
-
|
| 66 |
-
# Document title trailers: "IITM BS Degree Programme - Student Handb..."
|
| 67 |
-
# These appear as orphaned suffixes after the noise strip above
|
| 68 |
r'IITM\s+BS\s+Degree\s+Programme\s*[-–]\s*Student\s+Hand\w*[^\n]*',
|
| 69 |
-
|
| 70 |
-
# Report abuse / learn more footer
|
| 71 |
r'Report\s+abuse\s+Learn\s+more[^\n]*',
|
| 72 |
-
|
| 73 |
-
# Auto-update notice
|
| 74 |
r'Updated\s+automatically\s+every\s+\d+\s+minutes[^\n]*',
|
| 75 |
-
|
| 76 |
-
# Google Docs URLs
|
| 77 |
r'https://docs\.google\.com/\S+',
|
| 78 |
-
|
| 79 |
-
# Bare page-number artifacts: " 38/66 " or "10/66" on their own line
|
| 80 |
-
# (excludes /100 since that's always a score threshold, e.g. "40/100")
|
| 81 |
r'(?<![\d>=])\b\d{1,3}/(?!100\b)\d{2,3}\b(?!\d)\s*(?=\n|$)',
|
| 82 |
-
|
| 83 |
r'^#{1,3}\s*BS-DS_\s*May\s*2026\s*Grading\s*document\s*\(Student\)\s*$',
|
| 84 |
r'^BS-DS_\s*May\s*2026\s*Grading\s*document\s*\(Student\)\s*$',
|
| 85 |
r'^Updated\s+automatically\s+every\s+\d+\s+minutes\s*$',
|
|
@@ -89,9 +90,8 @@ def clean_markdown(raw_text: str) -> str:
|
|
| 89 |
text = re.sub(pattern, '', text, flags=re.IGNORECASE | re.MULTILINE)
|
| 90 |
|
| 91 |
text = html_tables_to_markdown(text)
|
| 92 |
-
|
| 93 |
-
text = re.sub(r'
|
| 94 |
-
text = re.sub(r'\n{3,}', '\n\n', text).strip() # blank line runs → one
|
| 95 |
return text
|
| 96 |
|
| 97 |
|
|
@@ -101,7 +101,7 @@ def load_and_split(md_path: Path) -> list[Document]:
|
|
| 101 |
|
| 102 |
header_splitter = MarkdownHeaderTextSplitter(
|
| 103 |
headers_to_split_on=HEADERS_TO_SPLIT,
|
| 104 |
-
strip_headers=False,
|
| 105 |
return_each_line=False,
|
| 106 |
)
|
| 107 |
header_docs = header_splitter.split_text(cleaned)
|
|
@@ -113,11 +113,6 @@ def load_and_split(md_path: Path) -> list[Document]:
|
|
| 113 |
)
|
| 114 |
final_docs = char_splitter.split_documents(header_docs)
|
| 115 |
|
| 116 |
-
# Prepend the section's header path to every chunk's content.
|
| 117 |
-
# Without this, a chunk containing e.g. a course's T formula but not
|
| 118 |
-
# the course name (because the header line landed in an earlier chunk)
|
| 119 |
-
# won't match queries that mention the course name — for either the
|
| 120 |
-
# vector embedding or BM25.
|
| 121 |
for doc in final_docs:
|
| 122 |
header_parts = [
|
| 123 |
doc.metadata.get("h1", ""),
|
|
@@ -127,11 +122,10 @@ def load_and_split(md_path: Path) -> list[Document]:
|
|
| 127 |
header_path = " > ".join(p for p in header_parts if p)
|
| 128 |
if header_path:
|
| 129 |
doc.page_content = (
|
| 130 |
-
|
| 131 |
-
|
| 132 |
-
|
| 133 |
-
)
|
| 134 |
-
|
| 135 |
|
| 136 |
for doc in final_docs:
|
| 137 |
doc.metadata["source"] = md_path.name
|
|
@@ -155,13 +149,15 @@ def build_index():
|
|
| 155 |
if not all_docs:
|
| 156 |
print("No valid documents found. Exiting.")
|
| 157 |
return
|
| 158 |
-
|
| 159 |
-
print(f"\nEmbedding and indexing {len(all_docs)} chunks into ChromaDB...")
|
| 160 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 161 |
vectorstore = Chroma.from_documents(
|
| 162 |
documents=all_docs,
|
| 163 |
embedding=embeddings,
|
| 164 |
-
|
| 165 |
collection_name=COLLECTION_NAME,
|
| 166 |
)
|
| 167 |
|
|
|
|
| 1 |
+
import os
|
| 2 |
import re
|
| 3 |
from pathlib import Path
|
| 4 |
+
from dotenv import load_dotenv
|
| 5 |
from langchain_core.documents import Document
|
| 6 |
from langchain_text_splitters import MarkdownHeaderTextSplitter, RecursiveCharacterTextSplitter
|
| 7 |
from langchain_chroma import Chroma
|
| 8 |
from langchain_huggingface import HuggingFaceEmbeddings
|
| 9 |
|
| 10 |
+
load_dotenv()
|
| 11 |
+
|
| 12 |
DATA_DIR = Path("data")
|
| 13 |
DB_DIR = "db"
|
| 14 |
COLLECTION_NAME = "handbook_docs"
|
|
|
|
| 17 |
CHUNK_SIZE = 2000
|
| 18 |
CHUNK_OVERLAP = 200
|
| 19 |
|
| 20 |
+
CHROMA_API_KEY = os.getenv("CHROMA_API_KEY")
|
| 21 |
+
CHROMA_TENANT = os.getenv("CHROMA_TENANT")
|
| 22 |
+
CHROMA_DATABASE = os.getenv("CHROMA_DATABASE")
|
| 23 |
+
USE_CHROMA_CLOUD = bool(CHROMA_API_KEY)
|
| 24 |
+
|
| 25 |
+
|
| 26 |
+
def get_chroma_client():
|
| 27 |
+
"""Return a chromadb client — CloudClient if Chroma Cloud env vars are
|
| 28 |
+
set, otherwise a local PersistentClient writing to DB_DIR."""
|
| 29 |
+
import chromadb
|
| 30 |
+
|
| 31 |
+
if USE_CHROMA_CLOUD:
|
| 32 |
+
return chromadb.CloudClient(
|
| 33 |
+
api_key=CHROMA_API_KEY,
|
| 34 |
+
tenant=CHROMA_TENANT,
|
| 35 |
+
database=CHROMA_DATABASE,
|
| 36 |
+
)
|
| 37 |
+
return chromadb.PersistentClient(path=DB_DIR)
|
| 38 |
+
|
| 39 |
HEADERS_TO_SPLIT = [
|
| 40 |
("#", "h1"),
|
| 41 |
("##", "h2"),
|
|
|
|
| 72 |
def clean_markdown(raw_text: str) -> str:
|
| 73 |
noise_patterns = [
|
| 74 |
r'\d{1,2}/\d{1,2}/\d{2,4},\s+\d{1,2}:\d{2}\s+[AP]M[^\n]*',
|
|
|
|
|
|
|
| 75 |
r'Google Docs(?:\s+icon|\s+logo)?\s+Published using Google Docs[^\n]*',
|
|
|
|
|
|
|
|
|
|
| 76 |
r'\d+/\d+\s+info\s+icon\s+Published\s+using\s+Google\s+Docs[^\n]*',
|
|
|
|
|
|
|
| 77 |
r'Published\s+using\s+Google\s+Docs[^\n]*',
|
|
|
|
|
|
|
| 78 |
r'\binfo\s+icon\b[^\n]*',
|
|
|
|
|
|
|
|
|
|
| 79 |
r'IITM\s+BS\s+Degree\s+Programme\s*[-–]\s*Student\s+Hand\w*[^\n]*',
|
|
|
|
|
|
|
| 80 |
r'Report\s+abuse\s+Learn\s+more[^\n]*',
|
|
|
|
|
|
|
| 81 |
r'Updated\s+automatically\s+every\s+\d+\s+minutes[^\n]*',
|
|
|
|
|
|
|
| 82 |
r'https://docs\.google\.com/\S+',
|
|
|
|
|
|
|
|
|
|
| 83 |
r'(?<![\d>=])\b\d{1,3}/(?!100\b)\d{2,3}\b(?!\d)\s*(?=\n|$)',
|
|
|
|
| 84 |
r'^#{1,3}\s*BS-DS_\s*May\s*2026\s*Grading\s*document\s*\(Student\)\s*$',
|
| 85 |
r'^BS-DS_\s*May\s*2026\s*Grading\s*document\s*\(Student\)\s*$',
|
| 86 |
r'^Updated\s+automatically\s+every\s+\d+\s+minutes\s*$',
|
|
|
|
| 90 |
text = re.sub(pattern, '', text, flags=re.IGNORECASE | re.MULTILINE)
|
| 91 |
|
| 92 |
text = html_tables_to_markdown(text)
|
| 93 |
+
text = re.sub(r'[ \t]{2,}', ' ', text)
|
| 94 |
+
text = re.sub(r'\n{3,}', '\n\n', text).strip()
|
|
|
|
| 95 |
return text
|
| 96 |
|
| 97 |
|
|
|
|
| 101 |
|
| 102 |
header_splitter = MarkdownHeaderTextSplitter(
|
| 103 |
headers_to_split_on=HEADERS_TO_SPLIT,
|
| 104 |
+
strip_headers=False,
|
| 105 |
return_each_line=False,
|
| 106 |
)
|
| 107 |
header_docs = header_splitter.split_text(cleaned)
|
|
|
|
| 113 |
)
|
| 114 |
final_docs = char_splitter.split_documents(header_docs)
|
| 115 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 116 |
for doc in final_docs:
|
| 117 |
header_parts = [
|
| 118 |
doc.metadata.get("h1", ""),
|
|
|
|
| 122 |
header_path = " > ".join(p for p in header_parts if p)
|
| 123 |
if header_path:
|
| 124 |
doc.page_content = (
|
| 125 |
+
f"[Course: {header_path}]\n"
|
| 126 |
+
f"{doc.page_content}\n"
|
| 127 |
+
f"[/Course: {header_path}]"
|
| 128 |
+
)
|
|
|
|
| 129 |
|
| 130 |
for doc in final_docs:
|
| 131 |
doc.metadata["source"] = md_path.name
|
|
|
|
| 149 |
if not all_docs:
|
| 150 |
print("No valid documents found. Exiting.")
|
| 151 |
return
|
|
|
|
|
|
|
| 152 |
|
| 153 |
+
target = "Chroma Cloud" if USE_CHROMA_CLOUD else f"local dir '{DB_DIR}'"
|
| 154 |
+
print(f"\nEmbedding and indexing {len(all_docs)} chunks into {target}...")
|
| 155 |
+
|
| 156 |
+
client = get_chroma_client()
|
| 157 |
vectorstore = Chroma.from_documents(
|
| 158 |
documents=all_docs,
|
| 159 |
embedding=embeddings,
|
| 160 |
+
client=client,
|
| 161 |
collection_name=COLLECTION_NAME,
|
| 162 |
)
|
| 163 |
|
src/retrieve.py
CHANGED
|
@@ -1,4 +1,7 @@
|
|
| 1 |
import re
|
|
|
|
|
|
|
|
|
|
| 2 |
from langchain_chroma import Chroma
|
| 3 |
from langchain_huggingface import HuggingFaceEmbeddings
|
| 4 |
from langchain_community.retrievers import BM25Retriever
|
|
@@ -6,6 +9,8 @@ from langchain_community.cross_encoders import HuggingFaceCrossEncoder
|
|
| 6 |
from langchain_core.documents import Document
|
| 7 |
from langchain_classic.retrievers import EnsembleRetriever
|
| 8 |
|
|
|
|
|
|
|
| 9 |
DB_DIR = "db"
|
| 10 |
COLLECTION_NAME = "handbook_docs"
|
| 11 |
EMBED_MODEL = "BAAI/bge-small-en-v1.5"
|
|
@@ -17,6 +22,21 @@ FINAL_TOP_N = 5 # chunks returned after reranking
|
|
| 17 |
# Weights for RRF fusion: [vector_weight, bm25_weight]
|
| 18 |
ENSEMBLE_WEIGHTS = [0.6, 0.4]
|
| 19 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 20 |
|
| 21 |
_NOISE_PATTERNS = [
|
| 22 |
re.compile(r'\d+/\d+\s+info\s+icon\s+Published\s+using\s+Google\s+Docs[^\n]*', re.I),
|
|
@@ -47,15 +67,18 @@ def _is_toc_chunk(text: str) -> bool:
|
|
| 47 |
|
| 48 |
class Retriever:
|
| 49 |
def __init__(self):
|
|
|
|
|
|
|
|
|
|
| 50 |
embeddings = HuggingFaceEmbeddings(
|
| 51 |
model_name=EMBED_MODEL,
|
| 52 |
encode_kwargs={"normalize_embeddings": True},
|
| 53 |
)
|
| 54 |
|
| 55 |
vectorstore = Chroma(
|
|
|
|
| 56 |
collection_name=COLLECTION_NAME,
|
| 57 |
embedding_function=embeddings,
|
| 58 |
-
persist_directory=DB_DIR,
|
| 59 |
)
|
| 60 |
vector_retriever = vectorstore.as_retriever(
|
| 61 |
search_type="similarity",
|
|
@@ -122,9 +145,9 @@ if __name__ == "__main__":
|
|
| 122 |
r = Retriever()
|
| 123 |
|
| 124 |
queries = [
|
| 125 |
-
"What is the
|
| 126 |
-
"
|
| 127 |
-
"
|
| 128 |
]
|
| 129 |
|
| 130 |
for q in queries:
|
|
|
|
| 1 |
import re
|
| 2 |
+
from dotenv import load_dotenv
|
| 3 |
+
import os
|
| 4 |
+
import chromadb
|
| 5 |
from langchain_chroma import Chroma
|
| 6 |
from langchain_huggingface import HuggingFaceEmbeddings
|
| 7 |
from langchain_community.retrievers import BM25Retriever
|
|
|
|
| 9 |
from langchain_core.documents import Document
|
| 10 |
from langchain_classic.retrievers import EnsembleRetriever
|
| 11 |
|
| 12 |
+
load_dotenv()
|
| 13 |
+
|
| 14 |
DB_DIR = "db"
|
| 15 |
COLLECTION_NAME = "handbook_docs"
|
| 16 |
EMBED_MODEL = "BAAI/bge-small-en-v1.5"
|
|
|
|
| 22 |
# Weights for RRF fusion: [vector_weight, bm25_weight]
|
| 23 |
ENSEMBLE_WEIGHTS = [0.6, 0.4]
|
| 24 |
|
| 25 |
+
CHROMA_API_KEY = os.getenv("CHROMA_API_KEY")
|
| 26 |
+
CHROMA_TENANT = os.getenv("CHROMA_TENANT")
|
| 27 |
+
CHROMA_DATABASE = os.getenv("CHROMA_DATABASE")
|
| 28 |
+
USE_CHROMA_CLOUD = bool(CHROMA_API_KEY)
|
| 29 |
+
|
| 30 |
+
|
| 31 |
+
def get_chroma_client():
|
| 32 |
+
if USE_CHROMA_CLOUD:
|
| 33 |
+
return chromadb.CloudClient(
|
| 34 |
+
api_key=CHROMA_API_KEY,
|
| 35 |
+
tenant=CHROMA_TENANT,
|
| 36 |
+
database=CHROMA_DATABASE,
|
| 37 |
+
)
|
| 38 |
+
return chromadb.PersistentClient(path=DB_DIR)
|
| 39 |
+
|
| 40 |
|
| 41 |
_NOISE_PATTERNS = [
|
| 42 |
re.compile(r'\d+/\d+\s+info\s+icon\s+Published\s+using\s+Google\s+Docs[^\n]*', re.I),
|
|
|
|
| 67 |
|
| 68 |
class Retriever:
|
| 69 |
def __init__(self):
|
| 70 |
+
backend = "Chroma Cloud" if USE_CHROMA_CLOUD else f"local dir '{DB_DIR}'"
|
| 71 |
+
print(f"Connecting to Chroma backend: {backend}")
|
| 72 |
+
|
| 73 |
embeddings = HuggingFaceEmbeddings(
|
| 74 |
model_name=EMBED_MODEL,
|
| 75 |
encode_kwargs={"normalize_embeddings": True},
|
| 76 |
)
|
| 77 |
|
| 78 |
vectorstore = Chroma(
|
| 79 |
+
client=get_chroma_client(),
|
| 80 |
collection_name=COLLECTION_NAME,
|
| 81 |
embedding_function=embeddings,
|
|
|
|
| 82 |
)
|
| 83 |
vector_retriever = vectorstore.as_retriever(
|
| 84 |
search_type="similarity",
|
|
|
|
| 145 |
r = Retriever()
|
| 146 |
|
| 147 |
queries = [
|
| 148 |
+
"What is the alumni fees?",
|
| 149 |
+
"What is the criteria to pass DBMS OPPE?",
|
| 150 |
+
"What is the end term exam date?",
|
| 151 |
]
|
| 152 |
|
| 153 |
for q in queries:
|
src/tracing.py
CHANGED
|
@@ -1,5 +1,7 @@
|
|
| 1 |
import os
|
| 2 |
from dotenv import load_dotenv
|
|
|
|
|
|
|
| 3 |
|
| 4 |
load_dotenv()
|
| 5 |
|
|
@@ -12,9 +14,6 @@ langfuse_handler = None
|
|
| 12 |
observe = None
|
| 13 |
|
| 14 |
if LANGFUSE_ENABLED:
|
| 15 |
-
from langfuse import get_client, observe as _observe
|
| 16 |
-
from langfuse.langchain import CallbackHandler
|
| 17 |
-
|
| 18 |
langfuse = get_client()
|
| 19 |
langfuse_handler = CallbackHandler()
|
| 20 |
observe = _observe
|
|
|
|
| 1 |
import os
|
| 2 |
from dotenv import load_dotenv
|
| 3 |
+
from langfuse import get_client, observe as _observe
|
| 4 |
+
from langfuse.langchain import CallbackHandler
|
| 5 |
|
| 6 |
load_dotenv()
|
| 7 |
|
|
|
|
| 14 |
observe = None
|
| 15 |
|
| 16 |
if LANGFUSE_ENABLED:
|
|
|
|
|
|
|
|
|
|
| 17 |
langfuse = get_client()
|
| 18 |
langfuse_handler = CallbackHandler()
|
| 19 |
observe = _observe
|