Update Dockerfile

Dockerfile

@@ -4,7 +4,7 @@ FROM python:3.10-slim
 # Set working directory
 WORKDIR /app
 
-# Install system dependencies (for BLAST, bioinformatics tools)
+# Install system dependencies
 RUN apt-get update && apt-get install -y \
     ncbi-blast+ \
     git \
@@ -17,23 +17,43 @@ COPY requirements.txt .
 # Install Python dependencies
 RUN pip install --no-cache-dir -r requirements.txt
 
-# Copy application code (exclude large data files)
+# Copy application
 COPY app.py .
 COPY app_new.py .
+
+# Copy frontend
 COPY static/ ./static/
 COPY templates/ ./templates/
+
+# Copy ML model files
 COPY label_encoder.pkl .
 COPY best_model_LR.sav .
 
-# Create directories for temp data
+# =========================================================
+# COPY BLAST DATABASE
+# =========================================================
+COPY pathway_db.phr .
+COPY pathway_db.pin .
+COPY pathway_db.psq .
+COPY pathway_db.pdb .
+COPY pathway_db.pot .
+COPY pathway_db.ptf .
+COPY pathway_db.pto .
+
+# =========================================================
+# COPY PATHWAY MAPPING FILE
+# =========================================================
+COPY pathway_map.csv .
+
+# Create directories for temporary data
 RUN mkdir -p /app/data /app/temp /app/uploads
 
-# Expose port
+# Expose Hugging Face port
 EXPOSE 7860
 
 # Health check
-HEALTHCHECK --interval=30s --timeout=10s --start-period=5s --retries=3 \
+HEALTHCHECK --interval=30s --timeout=10s --start-period=30s --retries=3 \
     CMD python -c "import urllib.request; urllib.request.urlopen('http://localhost:7860').read()"
 
-# Run app (Hugging Face uses port 7860)
-CMD ["python", "app.py"]
+# Start application
+CMD ["python", "app.py"]