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| import gradio as gr | |
| import re | |
| import string | |
| import random | |
| from bs4 import BeautifulSoup | |
| contents = '' | |
| def make_body(file): | |
| with open(file.name, 'r') as xml_file: | |
| text = xml_file.read() | |
| xml = BeautifulSoup(text, "xml") | |
| global contents | |
| contents = str(xml.find_all('body')).strip('[]') | |
| allReferences = [] | |
| for tag in xml.findAll('ref'): | |
| allReferences.append(tag.get('id')) | |
| with open("body.xml", 'w') as f: | |
| f.write(make_refs(contents, allReferences)) | |
| return "body.xml" | |
| def index_to_ref_id(reference_text, reference_ids): | |
| reference_text = reference_text.strip('[]') | |
| dash_separator = "–" # long dash here | |
| comma_separator = ", " # workaound | |
| id_max = len(reference_ids) | |
| ids = [] | |
| refs = [] | |
| if reference_text.find(dash_separator) != -1: | |
| s, e = [int(x) for x in reference_text.split(dash_separator)] | |
| for i in range(s,e+1): | |
| ids.append(i) | |
| elif reference_text.find(comma_separator) != -1: | |
| ids = [int(x) for x in reference_text.split(comma_separator)] | |
| else: | |
| ids.append(int(reference_text)) | |
| for id in ids: | |
| refs.append(reference_ids[id-1]) | |
| return refs | |
| # https://www.geeksforgeeks.org/python-generate-random-string-of-given-length/ | |
| def generate_id(type, length=32): | |
| N = length | |
| # using random.choices() | |
| # generating random strings | |
| res = type + '-' + ''.join(random.choices(string.ascii_lowercase + | |
| string.digits, k=N)) | |
| return(str(res)) | |
| def xref_generator(reference_text, reference_ids): | |
| id_type = "xref" | |
| references_str = ' '.join(index_to_ref_id(reference_text, reference_ids)) | |
| generated_xref = '<xref id="' + generate_id(id_type) + '" ref-type="bibr" rid="' + references_str + '">' + reference_text + '</xref>' | |
| return generated_xref | |
| def make_refs(article_body, reference_ids): | |
| citations_list = [] | |
| citations_raw = re.findall(r"\[\d+(?:–\d+)?(?:,\s?\d+)*\]", contents) | |
| for cit in citations_raw: | |
| citations_list.append(cit) # bugfix | |
| x = contents | |
| for cit in citations_list: | |
| x = x.replace(str(cit), str(xref_generator(cit, reference_ids))) | |
| return x | |
| demo = gr.Interface( | |
| make_body, | |
| gr.File(file_count="single", file_types=[".xml"]), | |
| "file", | |
| description= | |
| """ | |
| # Инструкция: | |
| 1. В левое окно перетащить файл jats xml с размеченным списком литературы (файл 1); | |
| 2. Нажать "Submit"; | |
| 3. В правом окне появится строчка "body.xml"; | |
| 4. Нажать на неё, загрузится body.xml; | |
| 5. Скопировать содержимое файла body.xml; | |
| 6. Заменить в файле (1) раздел body содержимым файла body.xml. | |
| """, | |
| allow_flagging="never" | |
| ) | |
| demo.launch() | |