FlyBrain-Lab / src /memory /persistence.py
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import os
import sqlite3
import json
import threading
import time
from contextlib import contextmanager
import numpy as np
from typing import List, Dict, Any, Optional
from src.memory.working import WorkingMemory
DEFAULT_DB_PATH = os.path.join("diagnostics", "memory_store.db")
class PersistentMemoryManager:
"""
Multi-store persistent memory framework surviving process restarts.
Manages Working Memory, Episodic Memory, Semantic Associative Memory,
Skill Memory, and Dream Replay Memory.
"""
def __init__(self, db_path: str = DEFAULT_DB_PATH):
self.db_path = db_path
self._lock = threading.RLock()
os.makedirs(os.path.dirname(os.path.abspath(db_path)), exist_ok=True)
self.working = WorkingMemory(capacity=7)
self._init_db()
@contextmanager
def _locked(self):
self._lock.acquire()
try:
yield
finally:
self._lock.release()
def _init_db(self):
with self._locked(), sqlite3.connect(self.db_path) as conn:
cursor = conn.cursor()
# 1. Episodic memory table
cursor.execute("""
CREATE TABLE IF NOT EXISTS episodic_memory (
id INTEGER PRIMARY KEY AUTOINCREMENT,
timestamp REAL,
step INTEGER,
observation TEXT,
action TEXT,
reward REAL,
prediction_error REAL,
outcome TEXT
)
""")
# 2. Semantic associative memory table
cursor.execute("""
CREATE TABLE IF NOT EXISTS semantic_memory (
id INTEGER PRIMARY KEY AUTOINCREMENT,
concept TEXT UNIQUE,
description TEXT,
embedding BLOB,
associations TEXT
)
""")
# 3. Skill memory table
cursor.execute("""
CREATE TABLE IF NOT EXISTS skill_memory (
skill_name TEXT PRIMARY KEY,
tool_sequence TEXT,
success_count INTEGER,
attempt_count INTEGER,
last_used REAL
)
""")
# 4. Dream & replay memory table
cursor.execute("""
CREATE TABLE IF NOT EXISTS dream_memory (
id INTEGER PRIMARY KEY AUTOINCREMENT,
timestamp REAL,
seed INTEGER,
base_episode_id INTEGER,
simulated_action TEXT,
counterfactual_reward REAL,
insight TEXT
)
""")
# 5. Experiment history table
cursor.execute("""
CREATE TABLE IF NOT EXISTS experiment_history (
experiment_id TEXT PRIMARY KEY,
timestamp REAL,
seed INTEGER,
config TEXT,
results TEXT
)
""")
conn.commit()
# --- Episodic Operations ---
def record_episode(
self,
step: int,
observation: Any,
action: str,
reward: float,
prediction_error: float,
outcome: Any
) -> int:
with self._locked(), sqlite3.connect(self.db_path) as conn:
cursor = conn.cursor()
cursor.execute("""
INSERT INTO episodic_memory (timestamp, step, observation, action, reward, prediction_error, outcome)
VALUES (?, ?, ?, ?, ?, ?, ?)
""", (
time.time(),
step,
json.dumps(observation) if not isinstance(observation, str) else observation,
action,
reward,
prediction_error,
json.dumps(outcome) if not isinstance(outcome, str) else outcome
))
conn.commit()
return cursor.lastrowid
def get_recent_episodes(self, limit: int = 10) -> List[Dict[str, Any]]:
with self._locked(), sqlite3.connect(self.db_path) as conn:
conn.row_factory = sqlite3.Row
cursor = conn.cursor()
cursor.execute("SELECT * FROM episodic_memory ORDER BY id DESC LIMIT ?", (limit,))
rows = cursor.fetchall()
return [dict(r) for r in rows]
# --- Semantic Associative Operations ---
def store_concept(self, concept: str, description: str, embedding: np.ndarray, associations: Optional[Dict] = None):
emb_blob = np.asarray(embedding, dtype=np.float32).tobytes()
assoc_str = json.dumps(associations or {})
with self._locked(), sqlite3.connect(self.db_path) as conn:
cursor = conn.cursor()
cursor.execute("""
INSERT INTO semantic_memory (concept, description, embedding, associations)
VALUES (?, ?, ?, ?)
ON CONFLICT(concept) DO UPDATE SET
description=excluded.description,
embedding=excluded.embedding,
associations=excluded.associations
""", (concept, description, emb_blob, assoc_str))
conn.commit()
def query_semantic(self, query_emb: np.ndarray, top_k: int = 3) -> List[Dict[str, Any]]:
query_vec = np.asarray(query_emb, dtype=np.float32).flatten()
norm_q = np.linalg.norm(query_vec) + 1e-7
with self._locked(), sqlite3.connect(self.db_path) as conn:
conn.row_factory = sqlite3.Row
cursor = conn.cursor()
cursor.execute("SELECT id, concept, description, embedding, associations FROM semantic_memory")
rows = cursor.fetchall()
scored = []
for r in rows:
emb = np.frombuffer(r["embedding"], dtype=np.float32)
sim = float(np.dot(query_vec, emb) / (norm_q * (np.linalg.norm(emb) + 1e-7)))
scored.append({
"concept": r["concept"],
"description": r["description"],
"similarity": sim,
"associations": json.loads(r["associations"])
})
scored.sort(key=lambda x: x["similarity"], reverse=True)
return scored[:top_k]
# --- Skill Memory Operations ---
def record_skill(self, skill_name: str, tool_sequence: List[str], success: bool):
with self._locked(), sqlite3.connect(self.db_path) as conn:
cursor = conn.cursor()
cursor.execute("SELECT success_count, attempt_count FROM skill_memory WHERE skill_name=?", (skill_name,))
row = cursor.fetchone()
if row:
s_count = row[0] + (1 if success else 0)
a_count = row[1] + 1
cursor.execute("""
UPDATE skill_memory SET
success_count=?, attempt_count=?, last_used=?, tool_sequence=?
WHERE skill_name=?
""", (s_count, a_count, time.time(), json.dumps(tool_sequence), skill_name))
else:
cursor.execute("""
INSERT INTO skill_memory (skill_name, tool_sequence, success_count, attempt_count, last_used)
VALUES (?, ?, ?, ?, ?)
""", (skill_name, json.dumps(tool_sequence), 1 if success else 0, 1, time.time()))
conn.commit()
def get_skills(self) -> List[Dict[str, Any]]:
with self._locked(), sqlite3.connect(self.db_path) as conn:
conn.row_factory = sqlite3.Row
cursor = conn.cursor()
cursor.execute("SELECT * FROM skill_memory ORDER BY success_count DESC")
return [
{
"skill_name": r["skill_name"],
"tool_sequence": json.loads(r["tool_sequence"]),
"success_count": r["success_count"],
"attempt_count": r["attempt_count"],
"success_rate": round(r["success_count"] / max(1, r["attempt_count"]), 3)
}
for r in cursor.fetchall()
]
# --- Dream & Replay Operations ---
def record_dream(
self,
seed: int = 42,
base_episode_id: int = 1,
simulated_action: str = "explore",
counterfactual_reward: float = 0.5,
insight: str = "",
**kwargs
) -> int:
ep_id = kwargs.get("episode_id", base_episode_id)
reward_val = kwargs.get("hypothetical_reward", counterfactual_reward)
insight_str = kwargs.get("consolidation_insight", insight)
seed_val = kwargs.get("seed", seed)
action_val = kwargs.get("simulated_action", simulated_action)
with self._locked(), sqlite3.connect(self.db_path) as conn:
cursor = conn.cursor()
cursor.execute("""
INSERT INTO dream_memory (timestamp, seed, base_episode_id, simulated_action, counterfactual_reward, insight)
VALUES (?, ?, ?, ?, ?, ?)
""", (time.time(), seed_val, ep_id, action_val, reward_val, insight_str))
conn.commit()
return cursor.lastrowid
def get_recent_dreams(self, limit: int = 10) -> List[Dict[str, Any]]:
with self._locked(), sqlite3.connect(self.db_path) as conn:
conn.row_factory = sqlite3.Row
cursor = conn.cursor()
cursor.execute("SELECT * FROM dream_memory ORDER BY id DESC LIMIT ?", (limit,))
return [dict(r) for r in cursor.fetchall()]
# --- Experiment History Operations ---
def record_experiment(self, experiment_id: str, seed: int, config: Dict, results: Dict):
with self._locked(), sqlite3.connect(self.db_path) as conn:
cursor = conn.cursor()
cursor.execute("""
INSERT OR REPLACE INTO experiment_history (experiment_id, timestamp, seed, config, results)
VALUES (?, ?, ?, ?, ?)
""", (experiment_id, time.time(), seed, json.dumps(config), json.dumps(results)))
conn.commit()