Spaces:
Sleeping
Sleeping
File size: 15,860 Bytes
ee117a1 1b00b0d ee117a1 1b00b0d ee117a1 691173a ee117a1 1b00b0d ee117a1 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 | """
inference.py — Baseline inference script for the Medical Diagnostic Environment.
This script demonstrates how to run the environment with an LLM (using OpenAI client)
and logs results in the exact format required by the hackathon.
Format requirements:
[START] task=<task_name> env=<env_name> model=<model_name>
[STEP] step=<n> action=<action_str> reward=<float> done=<bool> error=<str|null>
[END] success=<bool> steps=<n> score=<float> rewards=<comma_separated_list>
All fields on a single line with NO NEWLINES within a line.
"""
import asyncio
import os
import json
import textwrap
from typing import List, Optional, Dict
from openai import OpenAI
import sys
sys.path.insert(0, os.path.dirname(os.path.abspath(__file__)))
from client import DiagnosticEnv
from models import DiagnosticAction
# ==============================================================================
# CONFIGURATION
# ==============================================================================
# Configuration
API_KEY = os.environ.get("API_KEY")
API_BASE_URL = os.environ.get("API_BASE_URL")
MODEL_NAME = os.getenv("MODEL_NAME", "Qwen/Qwen2.5-72B-Instruct")
LOCAL_IMAGE_NAME = os.getenv("LOCAL_IMAGE_NAME", "medical-diagnostic-env:latest")
ENV_URL = os.getenv("ENV_URL", "ws://localhost:8000/ws")
BENCHMARK = os.getenv("BENCHMARK", "medical_diagnostic_env")
# Inference configuration
MAX_STEPS = 15 # Maximum steps per episode
TEMPERATURE = 0.7 # LLM temperature for reasoning
MAX_TOKENS = 256 # Max tokens per completion
TASK_NAMES = ["easy_diagnosis", "medium_diagnosis", "hard_diagnosis"]
DIFFICULTY_LEVELS = ["easy", "medium", "hard"]
# ==============================================================================
# LOGGING FUNCTIONS
# ==============================================================================
def log_start(task: str, env: str, model: str) -> None:
"""Log episode start in required format."""
# Clean model name for logging
model_clean = model.split("/")[-1] if "/" in model else model
print(f"[START] task={task} env={env} model={model_clean}", flush=True)
def log_step(step: int, action: str, reward: float, done: bool, error: Optional[str]) -> None:
"""Log single step in required format."""
error_val = f'"{error}"' if error else "null"
done_val = str(done).lower()
print(
f"[STEP] step={step} action={action} reward={reward:.2f} done={done_val} error={error_val}",
flush=True,
)
def log_end(success: bool, steps: int, score: float, rewards: List[float]) -> None:
"""Log episode end in required format."""
rewards_str = ",".join(f"{r:.2f}" for r in rewards)
success_val = str(success).lower()
print(
f"[END] success={success_val} steps={steps} score={score:.3f} rewards={rewards_str}",
flush=True,
)
# ==============================================================================
# LLM INTERACTION
# ==============================================================================
def create_system_prompt() -> str:
"""Create system prompt for medical diagnostic reasoning."""
return textwrap.dedent("""
You are an expert medical diagnostic AI assistant. Your role is to:
1. GATHER INFORMATION: Ask relevant clinical questions about symptoms,
history, and presentation.
2. ORDER TESTS: Request appropriate diagnostic tests based on the
differential diagnosis.
3. REASON DIAGNOSTICALLY: Consider the patient's presentation,
synthesize findings, and make a diagnosis.
Your reasoning should follow clinical guidelines and prioritize:
- Life-threatening conditions first (red flags)
- Most common diagnoses for the presentation
- Efficiency (minimize unnecessary tests)
When responding, use EXACTLY ONE of these actions:
ACTION: ask_question
QUESTION: <your question here>
OR
ACTION: order_test
TEST: <test name>
OR
ACTION: submit_diagnosis
DIAGNOSIS: <final diagnosis>
Be concise. Diagnose within 10-15 steps if possible.
""").strip()
def extract_action_from_response(response: str) -> Optional[Dict]:
"""
Extract structured action from LLM response.
Returns dict with:
{
"action_type": "ask_question" | "order_test" | "submit_diagnosis",
"question": str or None,
"test_name": str or None,
"diagnosis": str or None,
}
"""
response_lower = response.lower()
# Try to find ACTION: directive
if "action:" in response_lower:
lines = response.split("\n")
action_type = None
question = None
test_name = None
diagnosis = None
for i, line in enumerate(lines):
if "action:" in line.lower():
action_part = line.split(":", 1)[1].strip().lower()
if "question" in action_part:
action_type = "ask_question"
elif "test" in action_part:
action_type = "order_test"
elif "diagnosis" in action_part:
action_type = "submit_diagnosis"
if "question:" in line.lower():
question = line.split(":", 1)[1].strip()
elif "test:" in line.lower():
test_name = line.split(":", 1)[1].strip()
elif "diagnosis:" in line.lower():
diagnosis = line.split(":", 1)[1].strip()
if action_type:
return {
"action_type": action_type,
"question": question,
"test_name": test_name,
"diagnosis": diagnosis,
}
# Fallback: try to infer action type
if "question" in response_lower or "ask" in response_lower:
# Extract the question
for line in response.split("\n"):
if "?" in line:
return {
"action_type": "ask_question",
"question": line.strip(),
"test_name": None,
"diagnosis": None,
}
if "test" in response_lower or "order" in response_lower:
# Try to extract test name
words = response.split()
for i, word in enumerate(words):
if "test" in word.lower() and i + 1 < len(words):
test = words[i + 1]
return {
"action_type": "order_test",
"question": None,
"test_name": test,
"diagnosis": None,
}
if "diagnos" in response_lower:
# Try to extract diagnosis
for word in response.split():
if len(word) > 3: # Filter out small words
return {
"action_type": "submit_diagnosis",
"question": None,
"test_name": None,
"diagnosis": response.strip(),
}
return None
def build_conversation_history(episode_history: List[Dict]) -> List[Dict]:
"""Build conversation history for multi-turn interaction."""
conversation = [
{
"role": "system",
"content": create_system_prompt(),
}
]
for turn in episode_history:
# Add assistant message
if turn.get("agent_action"):
conversation.append({
"role": "assistant",
"content": turn["agent_action"],
})
# Add environment feedback
if turn.get("environment_feedback"):
conversation.append({
"role": "user",
"content": turn["environment_feedback"],
})
return conversation
# ==============================================================================
# EPISODE EXECUTION
# ==============================================================================
async def run_episode_async(
client: OpenAI,
image_name: str,
difficulty: str,
task_name: str,
) -> Dict:
"""
Run a single episode with asyncio.
Returns: {
"task": task_name,
"success": bool,
"steps_taken": int,
"total_reward": float,
"episode_rewards": [float],
"final_diagnosis_accuracy": float,
}
"""
log_start(task_name, "medical_diagnostic_env", MODEL_NAME)
# Reset environment
async with DiagnosticEnv.from_docker_image(image_name=image_name, base_url=ENV_URL) as env:
obs_result = await env.reset(difficulty=difficulty)
obs = obs_result.observation if hasattr(obs_result, 'observation') else obs_result
episode_history = []
episode_rewards = []
step_count = 0
error_occurred = False
# Initial environment message
initial_message = f"Patient presentation: {obs.message}"
while step_count < MAX_STEPS and not obs.done:
step_count += 1
# Build conversation with history
conversation = [
{
"role": "system",
"content": create_system_prompt(),
}
]
# Add conversation history
for turn in episode_history:
if turn.get("agent_thought"):
conversation.append({
"role": "assistant",
"content": f"Thinking: {turn['agent_thought']}\nAction: {turn['agent_action']}",
})
if turn.get("environment_response"):
conversation.append({
"role": "user",
"content": turn["environment_response"],
})
# Add current observation if first step
if step_count == 1:
conversation.append({
"role": "user",
"content": initial_message,
})
try:
# Get LLM response
response = client.chat.completions.create(
model=MODEL_NAME,
messages=conversation,
temperature=TEMPERATURE,
max_tokens=MAX_TOKENS,
)
llm_response = response.choices[0].message.content
# Extract action from response
action_dict = extract_action_from_response(llm_response)
if not action_dict:
error_msg = "Could not parse action from response"
log_step(step_count, "parse_error", 0.0, False, error_msg)
error_occurred = True
break
# Create action
action = DiagnosticAction(
action_type=action_dict["action_type"],
question=action_dict.get("question"),
test_name=action_dict.get("test_name"),
diagnosis=action_dict.get("diagnosis"),
)
# Execute action with short action string for logging
action_str = f"{action.action_type}"
if action.question:
action_str += f"('{action.question[:30]}...')"
elif action.test_name:
action_str += f"('{action.test_name}')"
elif action.diagnosis:
action_str += f"('{action.diagnosis[:40]}...')"
# Take step in environment
step_result = await env.step(action)
obs = step_result.observation if hasattr(step_result, 'observation') else step_result
reward = obs.reward or 0.0
episode_rewards.append(reward)
log_step(step_count, action_str, reward, obs.done, None)
# Store in history
episode_history.append({
"agent_thought": llm_response[:100],
"agent_action": action_str,
"environment_response": obs.message[:200],
})
except Exception as e:
error_msg = str(e)[:100]
log_step(step_count, "error", 0.0, True, error_msg)
error_occurred = True
break
# Get final state
try:
state = await env.state()
final_accuracy = state.final_accuracy if hasattr(state, 'final_accuracy') else 0.0
except:
final_accuracy = 0.0
# Calculate results
total_reward = sum(episode_rewards)
success = obs.done and final_accuracy > 0.3
log_end(success, step_count, final_accuracy, episode_rewards)
return {
"task": task_name,
"success": success,
"steps_taken": step_count,
"total_reward": total_reward,
"episode_rewards": episode_rewards,
"final_diagnosis_accuracy": final_accuracy,
}
# ==============================================================================
# MAIN ORCHESTRATION
# ==============================================================================
async def run_all_tasks() -> Dict:
"""Run all 3 difficulty levels and report overall results."""
if not API_KEY:
print("ERROR: API key not found. Set API_KEY to the provided API key.", flush=True)
return {}
if not API_BASE_URL:
print("ERROR: API_BASE_URL is not set. Set API_BASE_URL to the provided LLM proxy endpoint.", flush=True)
return {}
if not ENV_URL:
print("ERROR: ENV_URL is not set. Set ENV_URL to the environment WebSocket URL.", flush=True)
return {}
# Initialize OpenAI client
client = OpenAI(
api_key=os.environ["API_KEY"],
base_url=os.environ["API_BASE_URL"],
)
results = {
"timestamp": None,
"model": MODEL_NAME,
"environment": "medical_diagnostic_env",
"tasks_completed": 0,
"task_results": [],
"overall_score": 0.0,
}
# Run each task
for i, (task_name, difficulty) in enumerate(zip(TASK_NAMES, DIFFICULTY_LEVELS)):
print(f"\n--- Task {i+1}/3: {difficulty} difficulty ---", flush=True)
try:
result = await run_episode_async(
client,
LOCAL_IMAGE_NAME,
difficulty=difficulty,
task_name=task_name,
)
results["task_results"].append(result)
results["tasks_completed"] += 1
except Exception as e:
print(f"ERROR in task {task_name}: {str(e)}", flush=True)
# Calculate overall score
if results["tasks_completed"] > 0:
accuracies = [r["final_diagnosis_accuracy"] for r in results["task_results"]]
results["overall_score"] = sum(accuracies) / len(accuracies)
# Print summary
print("\n" + "="*60, flush=True)
print(f"Baseline Inference Complete", flush=True)
print(f"Tasks completed: {results['tasks_completed']}/3", flush=True)
print(f"Overall diagnostic accuracy: {results['overall_score']:.3f}", flush=True)
print("="*60, flush=True)
return results
def main():
"""Entry point."""
# Run async loop
results = asyncio.run(run_all_tasks())
if __name__ == "__main__":
main()
|