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Commit History
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Fix Next.js 16 build: disable cacheComponents, add force-dynamic to all API routes and pages with server fetches
yassinekolsia3ea1a9 -
Fix all TypeScript errors: remove unused imports, delete orphan reactflow components
yassinekolsi532554f -
Fix Next.js 15 breaking change: await params in API routes
yassinekolsi804dcb2
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fix: PR review fixes - dockerfile, encoders, orchestrator, paths
yassinekolsi- dockerfile: use conda run for pip installs, remove hardcoded proxy, add COPY, fix ENV PATH syntax - orchestrator: remove duplicate Optional import, fix retriever API (modality param), safe getattr - encoders: batch_encode honors pooling setting in protein/text encoders - qdrant_retriever: safe modality mapping for legacy values - plugins/__init__: replace print with logging - run_summary.json: convert absolute paths to relative (5 files) - BIOFLOW_README: fix license badge (Apache->MIT) - USE_POLICY: fix spelling (sperate->separate) - model_customization.ipynb: fix config path - enhanced_search: sort by score after MMR, qdrant API fallback - UI: database filter state management, result display improvements5770d80
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Merge Rami into main-merge-rami (manual conflict resolution)
3c27eba -
Fix explorer/ingestion UI and 3D endpoints
673a52e -
feat: enhance visualization with mock data fallback and update readme
yassinekolsicd3cb84 -
fix: remove /dashboard prefix, fix theme toggle position, fix 3D viewer, remove langflow
yassinekolsif2bd2d1 -
feat: Complete Phase 4 UI/UX Polish with 3D visualization and workflow builder
ca41776
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Phase 1: FastAPI integration with DeepPurpose DTI predictor
- Added bioflow/api/ with FastAPI server (port 8000) - Integrated DeepPurposePredictor from deeppurpose002.py logic - Updated Next.js API routes to call FastAPI backend - Created launch_bioflow_full.bat for dual-server startup - Merged OpenBioMed core + lacoste001 Next.js UIadecc9b -
feat: add molecular and protein visualization dashboard
- Added 2D SMILES visualization using smiles-drawer - Added 3D Molecule visualization using 3Dmol.js - Added 3D Protein visualization using 3Dmol.js - Implemented mock API routes for molecules and proteins - Integrated visualization pages into the sidebar navigation - Added shadcn/ui ScrollArea and Alert components - Integrated PubChem and RCSB PDB data fetching20883f8 -
improve sidebar
85ba650 -
Improve sidebar
eaf815d -
refactor
56d7f80 -
Improve UI and unify api, types and schemas
64e5c41 -
Dashboard
cf1ba50