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Commit History
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Fix Next.js 16 build: disable cacheComponents, add force-dynamic to all API routes and pages with server fetches
yassinekolsia3ea1a9 -
Fix all TypeScript errors: remove unused imports, delete orphan reactflow components
yassinekolsi532554f
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feat: merge Rami's bioflow architecture with core-progress fixes
yassinekolsiMerged from origin/Rami: - Full bioflow/ package with agents, orchestrator, plugins - open_biomed/ integration for advanced models - Professional UI dashboard architecture - Docker support and batch scripts - Examples and workflow configs Kept from core-progress (our fixes): - Simplified theme toggle (single click, not dropdown) - 3Dmol viewer backgroundColor crash fix - Original server/api.py, config.py, ingest_qdrant.py - TECHNICAL_REPORT.md documentation - Original data/ and runs/ with prediction results - README.md Combined: Both DeepPurpose and OpenBioMed implementations2b2f173
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fix: restructure dashboard pages and fix 404 errors
yassinekolsidedd15b -
feat: add molecular and protein visualization dashboard
- Added 2D SMILES visualization using smiles-drawer - Added 3D Molecule visualization using 3Dmol.js - Added 3D Protein visualization using 3Dmol.js - Implemented mock API routes for molecules and proteins - Integrated visualization pages into the sidebar navigation - Added shadcn/ui ScrollArea and Alert components - Integrated PubChem and RCSB PDB data fetching20883f8 -
feat: Complete BioFlow Orchestrator hackathon implementation
yassinekolsiMajor Features: - Langflow visual workflow builder integration (embedded iframe) - Drug discovery search with real Qdrant vector search (23,531 vectors) - 3D embedding explorer with real PCA projections - FastAPI backend with DeepPurpose Morgan + CNN encoding Bug Fixes: - Fixed division by zero error (bypass data_process, direct Morgan encoding) - Fixed CUDA/CPU device mismatch (auto-detect from model parameters) - Fixed encoding dimension alignment for vector search UI Improvements: - Clean white design (removed dark gradients) - Real API calls only (no fake/mock data) - Simplified workflow page (removed hover effects, indicators) - Working search with Similarity/Binding Affinity/Properties modes Cleanup: - Removed INSTRUCTIONS.md, setup_venv.txt - Updated .gitignore for langflow_venv, data files - Added Langflow pipeline template Services: - Qdrant: 6333 - FastAPI: 8001 - Next.js: 3000 - Langflow: 7860a712e78 -
improve sidebar (cherry-picked from feat/raed-ui)
680788a -
improve sidebar
85ba650 -
chore: integrate UI snapshot from raed-ui branch
yassinekolsic5474d5 -
refactor
56d7f80 -
Improve UI and unify api, types and schemas
64e5c41 -
Dashboard
cf1ba50
