| from tokenizers import Tokenizer |
| from tokenizers.models import BPE |
| from transformers import PreTrainedTokenizerFast |
|
|
|
|
| class gLM2Tokenizer(PreTrainedTokenizerFast): |
|
|
| VOCAB = [ |
| "<cls>", "<pad>", "<eos>", "<unk>", |
| "L", "A", "G", "V", "S", "E", "R", "T", "I", "D", "P", "K", |
| "Q", "N", "F", "Y", "M", "H", "W", "C", "X", "B", "U", "Z", |
| "O", "a", "t", "c", "g", "<+>", "<->", "<mask>", "<sep>", |
| ] |
|
|
| def __init__( |
| self, |
| unk_token="<unk>", |
| cls_token="<cls>", |
| pad_token="<pad>", |
| mask_token="<mask>", |
| eos_token="<eos>", |
| sep_token="<sep>", |
| pos_token="<+>", |
| neg_token="<->", |
| **kwargs, |
| ): |
| all_tokens = self.VOCAB |
| token_to_id = {tok: ind for ind, tok in enumerate(all_tokens)} |
|
|
| bpe = BPE(token_to_id, merges=[], unk_token=str(unk_token)) |
| tokenizer = Tokenizer(bpe) |
| special_tokens = [cls_token, pad_token, |
| mask_token, eos_token, sep_token, pos_token, neg_token] |
|
|
| tokenizer.add_special_tokens( |
| special_tokens, |
| ) |
|
|
| super().__init__( |
| tokenizer_object=tokenizer, |
| unk_token=unk_token, |
| cls_token=cls_token, |
| pad_token=pad_token, |
| mask_token=mask_token, |
| eos_token=eos_token, |
| sep_token=sep_token, |
| **kwargs, |
| ) |
|
|
|
|
| class gLM2BGCTokenizer(gLM2Tokenizer): |
|
|
| BGC_DOMAINS = [ |
| "1-cysPrx_C", |
| "2-Hacid_dh", |
| "2-Hacid_dh_C", |
| "2-oxoacid_dh", |
| "2-ph_phosp", |
| "2Fe-2S_thioredx", |
| "2OG-FeII_Oxy_2", |
| "2OG-FeII_Oxy_3", |
| "2OG-Fe_Oxy_2", |
| "3-HAO", |
| "3Beta_HSD", |
| "3HBOH", |
| "3HCDH", |
| "3HCDH_N", |
| "4HBT", |
| "4HBT_2", |
| "5-FTHF_cyc-lig", |
| "5-nucleotidase", |
| "5_nucleotid_C", |
| "6PF2K", |
| "6PGD", |
| "AAL_decarboxy", |
| "AAT", |
| "AATase", |
| "AA_kinase", |
| "ABM", |
| "ACBP", |
| "ACCA", |
| "ACC_central", |
| "ACOX", |
| "ACPS", |
| "ACP_PD", |
| "ACP_syn_III", |
| "ACP_syn_III_C", |
| "ACT", |
| "ACT_7", |
| "ADC", |
| "ADH_N", |
| "ADH_N_2", |
| "ADH_N_assoc", |
| "ADH_zinc_N", |
| "ADH_zinc_N_2", |
| "ADK", |
| "ADK_lid", |
| "ADP_PFK_GK", |
| "ADP_ribosyl_GH", |
| "ADPrib_exo_Tox", |
| "ADSL_C", |
| "AFOR_C", |
| "AICARFT_IMPCHas", |
| "AIG2_2", |
| "AIRC", |
| "AIRS", |
| "AIRS_C", |
| "ALAD", |
| "ALG3", |
| "ALIX_LYPXL_bnd", |
| "ALO", |
| "ALS_ss_C", |
| "AMIN", |
| "AMNp_N", |
| "AMP-binding_C", |
| "AMP-binding_C_2", |
| "AMP_N", |
| "ANF_receptor", |
| "AOX", |
| "APH", |
| "APH_6_hur", |
| "APS_kinase", |
| "AP_endonuc_2", |
| "ARD", |
| "ART", |
| "AS-2OG-FeII_Oxy", |
| "AS-A-OX", |
| "AS-AMP-binding", |
| "AS-APE_KS1", |
| "AS-APE_KS2", |
| "AS-ATP-grasp", |
| "AS-ATd", |
| "AS-Abhydrolase_6", |
| "AS-Abi", |
| "AS-Acyl-CoA_dh_1", |
| "AS-Acyl-CoA_dh_M", |
| "AS-Acyl-CoA_dh_N", |
| "AS-AfsA", |
| "AS-Alpha-amylase", |
| "AS-Alpha-amylase_C", |
| "AS-Antimicr18", |
| "AS-Antimicrobial17", |
| "AS-Asn_synthase", |
| "AS-Autoind_synth", |
| "AS-AvrD", |
| "AS-BLS", |
| "AS-Bac_transf", |
| "AS-BacteriocIIc_cy", |
| "AS-Bacteriocin_II", |
| "AS-Bacteriocin_IIc", |
| "AS-Bacteriocin_IId", |
| "AS-Bacteriocin_IIi", |
| "AS-CAS", |
| "AS-CBM_48", |
| "AS-CDPS", |
| "AS-CaiA", |
| "AS-Capsule_synth", |
| "AS-Chal_sti_synt_C", |
| "AS-Chal_sti_synt_N", |
| "AS-Chor_lyase", |
| "AS-Cloacin", |
| "AS-Condensation", |
| "AS-DOIS", |
| "AS-DUF1205", |
| "AS-DUF3328", |
| "AS-DUF4135", |
| "AS-DUF692", |
| "AS-DUF98", |
| "AS-DarB", |
| "AS-DegT_DnrJ_EryC1", |
| "AS-Epimerase_2", |
| "AS-FMO-like", |
| "AS-FabF", |
| "AS-Fer4_12", |
| "AS-Flavoprotein", |
| "AS-GATase_7", |
| "AS-GST_C", |
| "AS-GST_N_3", |
| "AS-Gallidermin", |
| "AS-Glyco_tran_28_C", |
| "AS-Glyco_transf_28", |
| "AS-Glyco_transf_8", |
| "AS-Glyco_transf_8C", |
| "AS-Glyco_transf_9", |
| "AS-Glycos_transf_1", |
| "AS-Glycos_transf_2", |
| "AS-Glycos_transf_4", |
| "AS-HMGL-like", |
| "AS-IucA_IucC", |
| "AS-LANC_like", |
| "AS-LD_lanti_pre", |
| "AS-L_biotic_A", |
| "AS-Lactococcin", |
| "AS-Lactococcin_972", |
| "AS-Lant_dehydr_C", |
| "AS-Lant_dehydr_N", |
| "AS-LcnG-beta", |
| "AS-Linocin_M18", |
| "AS-LipM", |
| "AS-LipU", |
| "AS-LipV", |
| "AS-LmbU", |
| "AS-Lycopene_cycl", |
| "AS-MGT", |
| "AS-MannoseP_isomer", |
| "AS-MoeO5", |
| "AS-NAD_binding_4", |
| "AS-NapT7", |
| "AS-NasY", |
| "AS-NeoL", |
| "AS-Neocarzinostat", |
| "AS-PCMT", |
| "AS-PF00561", |
| "AS-PF00881", |
| "AS-PF04055", |
| "AS-PF05402", |
| "AS-PF06968", |
| "AS-PF07366", |
| "AS-PF13186", |
| "AS-PF13471", |
| "AS-PIG-L", |
| "AS-PKS_AT", |
| "AS-PKS_KS", |
| "AS-PP-binding", |
| "AS-PUFA_KS", |
| "AS-Peptidase_C39", |
| "AS-Peptidase_M16", |
| "AS-Peptidase_M16_C", |
| "AS-Peptidase_M42", |
| "AS-Peptidase_M50", |
| "AS-Peptidase_S28", |
| "AS-Peptidase_S41", |
| "AS-Peptidase_S8", |
| "AS-Peptidase_S9", |
| "AS-Pkinase", |
| "AS-Poly_export", |
| "AS-Polysacc_synt", |
| "AS-Polysacc_synt_2", |
| "AS-PoyD", |
| "AS-PpyS", |
| "AS-RimK", |
| "AS-RmlD_sub_bind", |
| "AS-SpcDK_cou", |
| "AS-SpcDK_glyc", |
| "AS-SpcFG", |
| "AS-Subtilosin_A", |
| "AS-TIGR01193", |
| "AS-TIGR01716", |
| "AS-TIGR02278", |
| "AS-TIGR03103", |
| "AS-TIGR03104", |
| "AS-TIGR03106", |
| "AS-TIGR03601", |
| "AS-TIGR03602", |
| "AS-TIGR03603", |
| "AS-TIGR03604", |
| "AS-TIGR03605", |
| "AS-TIGR03651", |
| "AS-TIGR03678", |
| "AS-TIGR03693", |
| "AS-TIGR03731", |
| "AS-TIGR03793", |
| "AS-TIGR03795", |
| "AS-TIGR03798", |
| "AS-TIGR03882", |
| "AS-TIGR03973", |
| "AS-TIGR03975", |
| "AS-TIGR04404", |
| "AS-TIGR04424", |
| "AS-TP_methylase", |
| "AS-TRI5", |
| "AS-Terpene_synth", |
| "AS-Terpene_synth_C", |
| "AS-TfuA", |
| "AS-ThiF", |
| "AS-ToyB", |
| "AS-Trp_halogenase", |
| "AS-TunD", |
| "AS-ValA", |
| "AS-Wzy_C", |
| "AS-YcaO", |
| "AS-adh_short", |
| "AS-adh_short_C2", |
| "AS-bacilysin", |
| "AS-bcpB", |
| "AS-botH", |
| "AS-bt1fas", |
| "AS-cyanobactin_synth", |
| "AS-cycdipepsynth", |
| "AS-cypI", |
| "AS-cypemycin", |
| "AS-dTDP_sugar_isom", |
| "AS-dmat", |
| "AS-ectoine_synt", |
| "AS-ene_KS", |
| "AS-fabH", |
| "AS-fom1", |
| "AS-frbD", |
| "AS-ft1fas", |
| "AS-fung_ggpps", |
| "AS-fung_ggpps2", |
| "AS-glycocin", |
| "AS-goadsporin_like", |
| "AS-hglD", |
| "AS-hglE", |
| "AS-hyb_KS", |
| "AS-indole_PTase", |
| "AS-indsynth", |
| "AS-itr_KS", |
| "AS-ksIII", |
| "AS-lacticin_l", |
| "AS-lacticin_mat", |
| "AS-ladderane", |
| "AS-lasso", |
| "AS-leader_d", |
| "AS-leader_eh", |
| "AS-mature_a", |
| "AS-mature_ab", |
| "AS-mature_b", |
| "AS-mature_d", |
| "AS-mature_ha", |
| "AS-mcjC", |
| "AS-melC", |
| "AS-micJ25", |
| "AS-micKC", |
| "AS-mitE", |
| "AS-mmyO", |
| "AS-mod_KS", |
| "AS-moeGT", |
| "AS-mvd", |
| "AS-mvnA", |
| "AS-nikJ", |
| "AS-nikO", |
| "AS-novH", |
| "AS-novI", |
| "AS-novJ", |
| "AS-novK", |
| "AS-orf2_PTase", |
| "AS-p450", |
| "AS-pgm1", |
| "AS-pgm_amidino", |
| "AS-phosphonates", |
| "AS-phytoene_synt", |
| "AS-phzB", |
| "AS-pop", |
| "AS-prnB", |
| "AS-pur10", |
| "AS-pur6", |
| "AS-salQ", |
| "AS-skfc", |
| "AS-strH", |
| "AS-strK1", |
| "AS-strK2", |
| "AS-strep_PEQAXS", |
| "AS-strepbact", |
| "AS-sublancin", |
| "AS-subtilosin", |
| "AS-t2clf", |
| "AS-t2fas", |
| "AS-t2ks", |
| "AS-t2pks2", |
| "AS-tabtoxin", |
| "AS-terpene_cyclase", |
| "AS-thio_amide", |
| "AS-thiostrepton", |
| "AS-thuricin", |
| "AS-tra_KS", |
| "AS-trichodiene_synth", |
| "AS-truD", |
| "AS-ubiA", |
| "AS-ustH", |
| "AS-vlmB", |
| "ASL_C", |
| "ASL_C2", |
| "ATP-grasp_2", |
| "ATP-grasp_3", |
| "ATP-grasp_4", |
| "ATP-grasp_5", |
| "ATP-gua_Ptrans", |
| "ATP-sulfurylase", |
| "ATP-synt_ab", |
| "ATP_bind_3", |
| "ATP_transf", |
| "ATPase", |
| "ATPgrasp_Ter", |
| "AXE1", |
| "A_deamin", |
| "A_deaminase", |
| "AbfB", |
| "Abhydro_lipase", |
| "Abhydrolase_2", |
| "Abhydrolase_3", |
| "Abhydrolase_4", |
| "Abhydrolase_5", |
| "Abhydrolase_8", |
| "AceK", |
| "AcetDehyd-dimer", |
| "Acetate_kinase", |
| "Acetone_carb_G", |
| "AcetylCoA_hyd_C", |
| "Acetyltransf_1", |
| "Acetyltransf_10", |
| "Acetyltransf_11", |
| "Acetyltransf_2", |
| "Acetyltransf_3", |
| "Acetyltransf_4", |
| "Acetyltransf_5", |
| "Acetyltransf_6", |
| "Acetyltransf_7", |
| "Acetyltransf_8", |
| "Acetyltransf_9", |
| "Acetyltransf_CG", |
| "Acid_PPase", |
| "Acid_phosphat_B", |
| "Aconitase", |
| "Aconitase_2_N", |
| "Aconitase_B_N", |
| "Aconitase_C", |
| "Actino_peptide", |
| "Acyl-ACP_TE", |
| "Acyl-CoA_dh_2", |
| "Acyl-CoA_dh_C", |
| "Acyl-CoA_ox_N", |
| "Acyl_CoA_thio", |
| "Acyl_transf_1", |
| "Acyl_transf_3", |
| "Acylphosphatase", |
| "Acyltransferase", |
| "Ad_cyc_g-alpha", |
| "Adenine_deam_C", |
| "Adenine_glyco", |
| "Adenylate_cycl", |
| "Adenylsucc_synt", |
| "AdoHcyase", |
| "AdoHcyase_NAD", |
| "AdoMet_MTase", |
| "AdoMet_Synthase", |
| "AdoMet_dc", |
| "AftA_C", |
| "AftA_N", |
| "AhpC-TSA", |
| "AlaDh_PNT_C", |
| "AlaDh_PNT_N", |
| "Ala_racemase_C", |
| "Ala_racemase_N", |
| "Ald_Xan_dh_C", |
| "Ald_Xan_dh_C2", |
| "Ald_deCOase", |
| "Aldedh", |
| "Aldo_ket_red", |
| "Aldolase", |
| "Aldolase_II", |
| "Aldose_epim", |
| "Alg6_Alg8", |
| "Alginate_lyase", |
| "Alginate_lyase2", |
| "AlkA_N", |
| "Alk_phosphatase", |
| "Alkyl_sulf_C", |
| "Allantoicase", |
| "Alliinase_C", |
| "Alpha-L-AF_C", |
| "Alpha-amyl_C2", |
| "Alpha-mann_mid", |
| "Alpha_L_fucos", |
| "Alpha_kinase", |
| "Amidase", |
| "Amidase02_C", |
| "Amidase_2", |
| "Amidase_3", |
| "Amidinotransf", |
| "Amido_AtzD_TrzD", |
| "Amidohydro_1", |
| "Amidohydro_2", |
| "Amidohydro_3", |
| "Amino_oxidase", |
| "Aminotran_1_2", |
| "Aminotran_3", |
| "Aminotran_4", |
| "Aminotran_5", |
| "An_peroxidase", |
| "AnfG_VnfG", |
| "AnmK", |
| "Anth_synt_I_N", |
| "Antibiotic_NAT", |
| "ApbA", |
| "ApbA_C", |
| "ApbE", |
| "ArabFuran-catal", |
| "Arabinose_Iso_C", |
| "Arabinose_Isome", |
| "Arabinose_trans", |
| "ArgJ", |
| "Arginase", |
| "Arginosuc_synth", |
| "Aromatic_hydrox", |
| "ArsC", |
| "Arylesterase", |
| "Arylsulfotran_2", |
| "Arylsulfotrans", |
| "AsnA", |
| "Asp", |
| "Asp_Arg_Hydrox", |
| "Asp_Glu_race", |
| "Asp_decarbox", |
| "Asparaginase", |
| "Asparaginase_2", |
| "Asparaginase_II", |
| "Aspzincin_M35", |
| "AstB", |
| "AstE_AspA", |
| "Astacin", |
| "B12-binding", |
| "B12-binding_2", |
| "BAAT_C", |
| "BAH", |
| "BATS", |
| "BBE", |
| "BCD", |
| "BCDHK_Adom3", |
| "BLUF", |
| "BPL_C", |
| "BPL_LplA_LipB", |
| "BPL_N", |
| "BRO1", |
| "B_lectin", |
| "BacA", |
| "Bac_GDH", |
| "Bac_luciferase", |
| "Bac_rhamnosid", |
| "Bac_rhamnosid_N", |
| "BcrAD_BadFG", |
| "BcsB", |
| "Bet_v_1", |
| "Beta-lactamase", |
| "BetaGal_dom2", |
| "BetaGal_dom3", |
| "BetaGal_dom4_5", |
| "Beta_elim_lyase", |
| "Bgal_small_N", |
| "Bile_Hydr_Trans", |
| "BioW", |
| "Biopterin_H", |
| "Biotin_carb_C", |
| "Biotin_carb_N", |
| "Biotin_lipoyl", |
| "Branch", |
| "BtrH_N", |
| "C1_1", |
| "C1_2", |
| "C1q", |
| "CARDB", |
| "CAT", |
| "CBAH", |
| "CBM-like", |
| "CBM9_1", |
| "CBM_1", |
| "CBM_10", |
| "CBM_14", |
| "CBM_19", |
| "CBM_2", |
| "CBM_21", |
| "CBM_3", |
| "CBM_4_9", |
| "CBM_5_12", |
| "CBM_6", |
| "CBM_X2", |
| "CBS", |
| "CCG", |
| "CCP_MauG", |
| "CDH", |
| "CDO_I", |
| "CDP-OH_P_transf", |
| "CHAP", |
| "CHB_HEX_C", |
| "CHMI", |
| "CHU_C", |
| "CLP_protease", |
| "CMAS", |
| "CMD", |
| "CM_1", |
| "CM_2", |
| "CNH", |
| "CN_hydrolase", |
| "COX1", |
| "COX2", |
| "COX2_TM", |
| "COX3", |
| "COX4", |
| "COX4_pro", |
| "COX7C", |
| "CO_deh_flav_C", |
| "COesterase", |
| "CP12", |
| "CPSase_L_D2", |
| "CPSase_L_D3", |
| "CPSase_sm_chain", |
| "CP_ATPgrasp_1", |
| "CRAL_TRIO", |
| "CS", |
| "CSS-motif", |
| "CTP_synth_N", |
| "CTP_transf_1", |
| "CTP_transf_3", |
| "CTP_transf_like", |
| "CT_A_B", |
| "CT_C_D", |
| "CYTH", |
| "Cadherin-like", |
| "Caleosin", |
| "Calpain_III", |
| "CarS-like", |
| "Carb_anhydrase", |
| "Carb_bind", |
| "Carb_kinase", |
| "Carbam_trans_N", |
| "Carboxyl_trans", |
| "Carn_acyltransf", |
| "Catalase", |
| "Catalase-rel", |
| "CbiA", |
| "CbiC", |
| "CbiD", |
| "CbiG_C", |
| "CbiG_N", |
| "CbiG_mid", |
| "CbiJ", |
| "CbiK", |
| "CbiX", |
| "CbiZ", |
| "CcmE", |
| "Cellulase", |
| "Cellulose_synt", |
| "Ceramidase", |
| "Ceramidase_alk", |
| "CheB_methylest", |
| "CheD", |
| "CheR", |
| "CheR_N", |
| "ChiC", |
| "Chitin_bind_1", |
| "Chitin_synth_1", |
| "Chitin_synth_1N", |
| "ChitinaseA_N", |
| "Chlor_dismutase", |
| "Chloroa_b-bind", |
| "Chlorophyllase", |
| "Chlorophyllase2", |
| "Choline_kinase", |
| "Choline_sulf_C", |
| "Chondroitinas_B", |
| "Chorismate_bind", |
| "Chorismate_synt", |
| "CinA", |
| "CitF", |
| "CitG", |
| "CitX", |
| "Citrate_ly_lig", |
| "Citrate_synt", |
| "ClpB_D2-small", |
| "CoA_binding", |
| "CoA_binding_2", |
| "CoA_trans", |
| "CoA_transf_3", |
| "CoaE", |
| "CobA_CobO_BtuR", |
| "CobD_Cbib", |
| "CobN-Mg_chel", |
| "CobS", |
| "CobT_C", |
| "CobU", |
| "Cob_adeno_trans", |
| "CofC", |
| "ComA", |
| "Complex1_30kDa", |
| "Complex1_49kDa", |
| "Complex1_51K", |
| "Cons_hypoth95", |
| "Coprogen_oxidas", |
| "CpcD", |
| "Cpn10", |
| "Cpn60_TCP1", |
| "Creatinase_N", |
| "Creatininase", |
| "CrtC", |
| "Cu-oxidase", |
| "Cu-oxidase_2", |
| "Cu-oxidase_3", |
| "Cu2_monoox_C", |
| "Cu_amine_oxid", |
| "Cu_amine_oxidN1", |
| "Cu_amine_oxidN2", |
| "Cu_amine_oxidN3", |
| "Cutinase", |
| "Cyanate_lyase", |
| "Cyc-maltodext_C", |
| "Cyclase", |
| "Cyclase_polyket", |
| "CysG_dimeriser", |
| "Cys_Met_Meta_PP", |
| "Cyt-b5", |
| "Cyt_c_ox_IV", |
| "Cytidylate_kin", |
| "Cyto_heme_lyase", |
| "Cytochrom_B561", |
| "Cytochrom_C", |
| "Cytochrom_C552", |
| "Cytochrom_D1", |
| "Cytochrome_C7", |
| "Cytochrome_CBB3", |
| "Cytokin-bind", |
| "D-ser_dehydrat", |
| "DAD", |
| "DAGAT", |
| "DAGK_acc", |
| "DAGK_cat", |
| "DAGK_prokar", |
| "DAHP_synth_1", |
| "DAHP_synth_2", |
| "DAO", |
| "DAP_B", |
| "DAP_epimerase", |
| "DBI_PRT", |
| "DCD", |
| "DDOST_48kD", |
| "DEK_C", |
| "DFP", |
| "DGOK", |
| "DHBP_synthase", |
| "DHDPS", |
| "DHFR_1", |
| "DHH", |
| "DHHA2", |
| "DHHC", |
| "DHODB_Fe-S_bind", |
| "DHO_dh", |
| "DHQS", |
| "DHQ_synthase", |
| "DHquinase_I", |
| "DHquinase_II", |
| "DIE2_ALG10", |
| "DIOX_N", |
| "DJ-1_PfpI", |
| "DKCLD", |
| "DLH", |
| "DMRL_synthase", |
| "DOMON", |
| "DPPIV_N", |
| "DPRP", |
| "DRAT", |
| "DS", |
| "DSBA", |
| "DSPc", |
| "DSPn", |
| "DUF1045", |
| "DUF108", |
| "DUF1100", |
| "DUF123", |
| "DUF1279", |
| "DUF1298", |
| "DUF1349", |
| "DUF1624", |
| "DUF1702", |
| "DUF1729", |
| "DUF1730", |
| "DUF1731", |
| "DUF1768", |
| "DUF1772", |
| "DUF1926", |
| "DUF1929", |
| "DUF1933", |
| "DUF1939", |
| "DUF1957", |
| "DUF1965", |
| "DUF1966", |
| "DUF1995", |
| "DUF2156", |
| "DUF2183", |
| "DUF2384", |
| "DUF2431", |
| "DUF294", |
| "DUF3291", |
| "DUF3336", |
| "DUF3340", |
| "DUF3367", |
| "DUF3372", |
| "DUF3381", |
| "DUF3385", |
| "DUF3410", |
| "DUF3417", |
| "DUF3458", |
| "DUF3459", |
| "DUF3479", |
| "DUF3488", |
| "DUF3543", |
| "DUF4033", |
| "DUF4111", |
| "DUF4118", |
| "DUF4129", |
| "DUF43", |
| "DUF4332", |
| "DUF4440", |
| "DUF452", |
| "DUF563", |
| "DUF608", |
| "DUF756", |
| "DUF89", |
| "DUF953", |
| "DUF971", |
| "DUSP", |
| "DXPR_C", |
| "DXP_reductoisom", |
| "DXP_synthase_N", |
| "Dabb", |
| "Dak1", |
| "Dak2", |
| "Dala_Dala_lig_C", |
| "Dala_Dala_lig_N", |
| "DapB_C", |
| "DapB_N", |
| "DehI", |
| "Dehydratase_MU", |
| "Dehydratase_SU", |
| "Dehydratase_hem", |
| "DeoC", |
| "Desulfoferrodox", |
| "DiS_P_DiS", |
| "Dimerisation", |
| "Dioxygenase_C", |
| "Dioxygenase_N", |
| "Diphthami_syn_2", |
| "Diphthamide_syn", |
| "Disintegrin", |
| "DmpG_comm", |
| "Dockerin_1", |
| "Docking", |
| "DoxA", |
| "DoxD", |
| "DsbC", |
| "DsbC_N", |
| "DsbD", |
| "DsrC", |
| "Dus", |
| "Dynamin_M", |
| "Dynamin_N", |
| "Dyp_perox", |
| "E1_dh", |
| "E3_binding", |
| "EAL", |
| "EBP", |
| "EB_dh", |
| "ECH_1", |
| "EF-hand_like", |
| "EGF_CA", |
| "EHN", |
| "EIIBC-GUT_C", |
| "ELFV_dehydrog", |
| "ELFV_dehydrog_N", |
| "ELO", |
| "EMG1", |
| "EPSP_synthase", |
| "ERAP1_C", |
| "ERG4_ERG24", |
| "ERp29", |
| "ETF_QO", |
| "Ectoine_synth", |
| "End_N_terminal", |
| "Eno-Rase_FAD_bd", |
| "Enolase_C", |
| "Enolase_N", |
| "Enoyl_reductase", |
| "Enterotoxin_a", |
| "Epimerase", |
| "Erythro-docking", |
| "Esterase", |
| "Esterase_phd", |
| "EutB", |
| "EutC", |
| "Exostosin", |
| "F-box", |
| "F-box-like", |
| "F420_ligase", |
| "F420_oxidored", |
| "F5_F8_type_C", |
| "FAA_hydrolase", |
| "FAA_hydrolase_N", |
| "FAD-oxidase_C", |
| "FAD_binding_1", |
| "FAD_binding_2", |
| "FAD_binding_3", |
| "FAD_binding_4", |
| "FAD_binding_5", |
| "FAD_binding_6", |
| "FAD_binding_8", |
| "FAD_binding_9", |
| "FAD_oxidored", |
| "FAD_syn", |
| "FAE1_CUT1_RppA", |
| "FAT", |
| "FATC", |
| "FA_desaturase", |
| "FA_desaturase_2", |
| "FA_hydroxylase", |
| "FA_synthesis", |
| "FBPase", |
| "FBPase_2", |
| "FBPase_glpX", |
| "FCH", |
| "FCSD-flav_bind", |
| "FDX-ACB", |
| "FGGY_C", |
| "FGGY_N", |
| "FGase", |
| "FIST", |
| "FKBP_C", |
| "FKBP_N", |
| "FMN_bind_2", |
| "FMN_dh", |
| "FMN_red", |
| "FR47", |
| "FRB_dom", |
| "FSH1", |
| "FTCD", |
| "FTCD_C", |
| "FTHFS", |
| "F_bP_aldolase", |
| "FabA", |
| "Fae", |
| "Fasciclin", |
| "FdtA", |
| "Fe-ADH", |
| "FeS", |
| "FeThRed_B", |
| "Fe_bilin_red", |
| "Fe_hyd_SSU", |
| "Fe_hyd_lg_C", |
| "FemAB", |
| "Fer2", |
| "Fer2_2", |
| "Fer2_3", |
| "Fer2_BFD", |
| "Fer4", |
| "Fer4_10", |
| "Fer4_11", |
| "Fer4_14", |
| "Fer4_18", |
| "Fer4_2", |
| "Fer4_20", |
| "Fer4_21", |
| "Fer4_6", |
| "Fer4_7", |
| "Fer4_8", |
| "Fer4_9", |
| "Ferric_reduct", |
| "Ferritin", |
| "Ferrochelatase", |
| "Flavin_Reduct", |
| "Flavodoxin_1", |
| "Flavodoxin_2", |
| "Flavodoxin_5", |
| "Flavokinase", |
| "FlpD", |
| "FmdA_AmdA", |
| "FolB", |
| "Formyl_trans_C", |
| "Formyl_trans_N", |
| "Frataxin_Cyay", |
| "FrhB_FdhB_C", |
| "Fringe", |
| "Fructosamin_kin", |
| "FtsJ", |
| "Fucose_iso_C", |
| "Fucose_iso_N1", |
| "FumaraseC_C", |
| "Fumble", |
| "Fumerase", |
| "Fumerase_C", |
| "G3P_acyltransf", |
| "G5", |
| "G6PD_C", |
| "G6PD_N", |
| "GAD", |
| "GAF", |
| "GAF_2", |
| "GAF_3", |
| "GARS_A", |
| "GARS_C", |
| "GARS_N", |
| "GATase", |
| "GATase_2", |
| "GATase_3", |
| "GCHY-1", |
| "GCS", |
| "GCS2", |
| "GCV_T", |
| "GCV_T_C", |
| "GDA1_CD39", |
| "GDC-P", |
| "GDE_C", |
| "GDPD", |
| "GDP_Man_Dehyd", |
| "GD_AH_C", |
| "GED", |
| "GFA", |
| "GFO_IDH_MocA", |
| "GFO_IDH_MocA_C", |
| "GGACT", |
| "GGDEF", |
| "GH97_C", |
| "GHMP_kinases_C", |
| "GHMP_kinases_N", |
| "GIDA", |
| "GLF", |
| "GMC_oxred_C", |
| "GMC_oxred_N", |
| "GMP_synt_C", |
| "GNAT_acetyltr_2", |
| "GNT-I", |
| "GPI2", |
| "GRAM", |
| "GRDB", |
| "GSDH", |
| "GSH-S_ATP", |
| "GSHPx", |
| "GSH_synth_ATP", |
| "GSH_synthase", |
| "GSP_synth", |
| "GST_C_3", |
| "GST_N", |
| "GST_N_2", |
| "GT87", |
| "GTP_cyclohydro2", |
| "GTP_cyclohydroI", |
| "GXGXG", |
| "G_glu_transpept", |
| "GalKase_gal_bdg", |
| "GalP_UDP_tr_C", |
| "GalP_UDP_transf", |
| "Gal_Lectin", |
| "Gal_mutarotas_2", |
| "Galactosyl_T", |
| "GatB_Yqey", |
| "GcpE", |
| "GlcNAc", |
| "Gln-synt_C", |
| "Gln-synt_N", |
| "GlnD_UR_UTase", |
| "Globin", |
| "Glu_cyclase_2", |
| "Glu_cys_ligase", |
| "Glu_syn_central", |
| "Glu_synthase", |
| "Glucan_synthase", |
| "Glucokinase", |
| "Gluconate_2-dh3", |
| "Glucosamine_iso", |
| "Glucosaminidase", |
| "Glug", |
| "Glutaminase", |
| "Glutaredoxin", |
| "Gly_kinase", |
| "Gly_radical", |
| "Gly_transf_sug", |
| "Glyco_hyd_65N_2", |
| "Glyco_hydr_116N", |
| "Glyco_hydro_1", |
| "Glyco_hydro_10", |
| "Glyco_hydro_100", |
| "Glyco_hydro_11", |
| "Glyco_hydro_12", |
| "Glyco_hydro_127", |
| "Glyco_hydro_130", |
| "Glyco_hydro_14", |
| "Glyco_hydro_15", |
| "Glyco_hydro_16", |
| "Glyco_hydro_17", |
| "Glyco_hydro_18", |
| "Glyco_hydro_19", |
| "Glyco_hydro_2", |
| "Glyco_hydro_20", |
| "Glyco_hydro_20b", |
| "Glyco_hydro_25", |
| "Glyco_hydro_26", |
| "Glyco_hydro_28", |
| "Glyco_hydro_2_C", |
| "Glyco_hydro_2_N", |
| "Glyco_hydro_3", |
| "Glyco_hydro_30", |
| "Glyco_hydro_31", |
| "Glyco_hydro_32C", |
| "Glyco_hydro_32N", |
| "Glyco_hydro_35", |
| "Glyco_hydro_38", |
| "Glyco_hydro_38C", |
| "Glyco_hydro_39", |
| "Glyco_hydro_3_C", |
| "Glyco_hydro_42", |
| "Glyco_hydro_42C", |
| "Glyco_hydro_42M", |
| "Glyco_hydro_43", |
| "Glyco_hydro_44", |
| "Glyco_hydro_45", |
| "Glyco_hydro_46", |
| "Glyco_hydro_47", |
| "Glyco_hydro_48", |
| "Glyco_hydro_49", |
| "Glyco_hydro_4C", |
| "Glyco_hydro_52", |
| "Glyco_hydro_53", |
| "Glyco_hydro_56", |
| "Glyco_hydro_57", |
| "Glyco_hydro_59", |
| "Glyco_hydro_6", |
| "Glyco_hydro_61", |
| "Glyco_hydro_62", |
| "Glyco_hydro_63", |
| "Glyco_hydro_65C", |
| "Glyco_hydro_65N", |
| "Glyco_hydro_65m", |
| "Glyco_hydro_66", |
| "Glyco_hydro_67C", |
| "Glyco_hydro_68", |
| "Glyco_hydro_7", |
| "Glyco_hydro_71", |
| "Glyco_hydro_75", |
| "Glyco_hydro_76", |
| "Glyco_hydro_77", |
| "Glyco_hydro_79n", |
| "Glyco_hydro_8", |
| "Glyco_hydro_81", |
| "Glyco_hydro_85", |
| "Glyco_hydro_88", |
| "Glyco_hydro_9", |
| "Glyco_hydro_97", |
| "Glyco_tran_WecB", |
| "Glyco_tranf_2_3", |
| "Glyco_tranf_2_5", |
| "Glyco_trans_1_4", |
| "Glyco_trans_4_2", |
| "Glyco_trans_4_4", |
| "Glyco_trans_A_1", |
| "Glyco_transf_15", |
| "Glyco_transf_17", |
| "Glyco_transf_20", |
| "Glyco_transf_21", |
| "Glyco_transf_22", |
| "Glyco_transf_25", |
| "Glyco_transf_29", |
| "Glyco_transf_34", |
| "Glyco_transf_36", |
| "Glyco_transf_4", |
| "Glyco_transf_41", |
| "Glyco_transf_5", |
| "Glyco_transf_54", |
| "Glyco_transf_64", |
| "Glyco_transf_7C", |
| "Glyco_transf_90", |
| "Glycogen_syn", |
| "Glycohydro_20b2", |
| "Glycolytic", |
| "Glycos_trans_3N", |
| "Glycos_transf_3", |
| "Glycos_transf_N", |
| "Glyoxalase", |
| "Glyoxalase_2", |
| "Glyoxalase_4", |
| "Glyphos_transf", |
| "Gp_dh_C", |
| "Gp_dh_N", |
| "Gpi1", |
| "GrpB", |
| "Guanylate_cyc", |
| "Guanylate_kin", |
| "HAD_2", |
| "HD", |
| "HD_3", |
| "HD_assoc", |
| "HEM4", |
| "HGD-D", |
| "HI0933_like", |
| "HIT", |
| "HK", |
| "HMA", |
| "HMG-CoA_red", |
| "HMG_CoA_synt_C", |
| "HMG_CoA_synt_N", |
| "HNOB", |
| "HPIH", |
| "HPPK", |
| "HR1", |
| "HTS", |
| "H_PPase", |
| "Haem_bd", |
| "Ham1p_like", |
| "HemN_C", |
| "HemX", |
| "Heme_oxygenase", |
| "Hemocyanin_C", |
| "Hepar_II_III", |
| "Hexapep_2", |
| "Hexokinase_1", |
| "Hexokinase_2", |
| "Hexose_dehydrat", |
| "HgmA", |
| "HisG", |
| "HisG_C", |
| "His_Phos_1", |
| "His_Phos_2", |
| "His_biosynth", |
| "Histidinol_dh", |
| "Homoserine_dh", |
| "HpaB", |
| "HpaB_N", |
| "HpcH_HpaI", |
| "Hpt", |
| "HsdM_N", |
| "HycI", |
| "Hydant_A_N", |
| "Hydantoinase_A", |
| "Hydantoinase_B", |
| "Hydrolase", |
| "Hydrolase_3", |
| "Hydrolase_4", |
| "Hydrolase_6", |
| "ICL", |
| "ICMT", |
| "IDH", |
| "IDO", |
| "IF-2B", |
| "IGPD", |
| "IGPS", |
| "ILVD_EDD", |
| "IMPDH", |
| "IMP_cyclohyd", |
| "IMS", |
| "IPK", |
| "IPPT", |
| "IPT", |
| "IU_nuc_hydro", |
| "IlvC", |
| "IlvN", |
| "Indigoidine_A", |
| "Inhibitor_I78", |
| "Inhibitor_I9", |
| "Inos-1-P_synth", |
| "Inositol_P", |
| "Ins134_P3_kin", |
| "Ins_P5_2-kin", |
| "Intron_maturas2", |
| "Iso_dh", |
| "Isochorismatase", |
| "IspD", |
| "JAB", |
| "JmjC", |
| "KA1", |
| "KAsynt_C_assoc", |
| "KDGP_aldolase", |
| "KR", |
| "KTI12", |
| "K_oxygenase", |
| "Kdo", |
| "KduI", |
| "Ketoacyl-synt_2", |
| "Ketoacyl-synt_C", |
| "Kinase-PPPase", |
| "Ku_N", |
| "LAB_N", |
| "LAM_C", |
| "LCAT", |
| "LCCL", |
| "LCM", |
| "LEH", |
| "LIP", |
| "LMWPc", |
| "LNS2", |
| "LON_substr_bdg", |
| "LPG_synthase_TM", |
| "LRAT", |
| "LRRNT_2", |
| "LYTB", |
| "LacAB_rpiB", |
| "Lact-deh-memb", |
| "Lactamase_B", |
| "Lactamase_B_3", |
| "Lactonase", |
| "Laminin_G_2", |
| "Ldh_1_C", |
| "Ldh_1_N", |
| "Ldh_2", |
| "Lectin_legB", |
| "LeuA_dimer", |
| "Leuk-A4-hydro_C", |
| "LigA", |
| "LigB", |
| "Ligase_CoA", |
| "Lip_A_acyltrans", |
| "Lip_prot_lig_C", |
| "Lipase3_N", |
| "Lipase_2", |
| "Lipase_3", |
| "Lipase_GDSL", |
| "Lipin_N", |
| "Lipocalin", |
| "Lipoxygenase", |
| "Lon_C", |
| "LpxB", |
| "LpxC", |
| "LpxD", |
| "LpxK", |
| "Lum_binding", |
| "LuxC", |
| "LuxE", |
| "LuxS", |
| "Lyase_1", |
| "Lyase_8", |
| "Lyase_8_C", |
| "Lyase_aromatic", |
| "Lyase_catalyt", |
| "Lys-AminoMut_A", |
| "Lysyl_oxidase", |
| "M20_dimer", |
| "MAAL_C", |
| "MAF_flag10", |
| "MAPEG", |
| "MASE1", |
| "MASE2", |
| "MATH", |
| "MBOAT", |
| "MCD", |
| "MCH", |
| "MCRA", |
| "MDH", |
| "MDMPI_N", |
| "MGDG_synth", |
| "MGS", |
| "MIOX", |
| "MIR", |
| "MIase", |
| "MM_CoA_mutase", |
| "MOFRL", |
| "MOSC", |
| "MOSC_N", |
| "MOZ_SAS", |
| "MR_MLE_C", |
| "MR_MLE_N", |
| "MT-A70", |
| "MTHFR", |
| "MTHFR_C", |
| "MTS", |
| "MTTB", |
| "Mac", |
| "Macro", |
| "Macro_2", |
| "Malate_synthase", |
| "Malectin_like", |
| "Malic_M", |
| "Mannitol_dh", |
| "Mannitol_dh_C", |
| "MaoC_dehydratas", |
| "MazG", |
| "MdcE", |
| "MdcG", |
| "Me-amine-dh_H", |
| "Me-amine-dh_L", |
| "MeMO_Hyd_G", |
| "Melibiase", |
| "MerB", |
| "Met_10", |
| "Met_asp_mut_E", |
| "Met_synt_B12", |
| "Metalloenzyme", |
| "Metallophos", |
| "Metallophos_2", |
| "Metallophos_C", |
| "Meth_synt_1", |
| "Meth_synt_2", |
| "Methyltrans_SAM", |
| "Methyltransf_10", |
| "Methyltransf_11", |
| "Methyltransf_12", |
| "Methyltransf_13", |
| "Methyltransf_14", |
| "Methyltransf_16", |
| "Methyltransf_19", |
| "Methyltransf_2", |
| "Methyltransf_21", |
| "Methyltransf_23", |
| "Methyltransf_24", |
| "Methyltransf_25", |
| "Methyltransf_3", |
| "Methyltransf_30", |
| "Methyltransf_31", |
| "Methyltransf_33", |
| "Methyltransf_34", |
| "Methyltransf_4", |
| "Methyltransf_5", |
| "Methyltransf_7", |
| "Methyltransf_8", |
| "Methyltransf_PK", |
| "Mg-por_mtran_C", |
| "Mg_chelatase", |
| "MgtC", |
| "MmgE_PrpD", |
| "MmlI", |
| "MmoB_DmpM", |
| "Mo-co_dimer", |
| "MoCF_biosynth", |
| "MoaC", |
| "MoaE", |
| "MobB", |
| "Mob_synth_C", |
| "MoeA_C", |
| "MoeA_N", |
| "Molybdop_Fe4S4", |
| "Molybdopterin", |
| "Molydop_binding", |
| "Mqo", |
| "Multi-haem_cyto", |
| "MurB_C", |
| "Mur_ligase", |
| "Mur_ligase_C", |
| "Mur_ligase_M", |
| "Muraidase", |
| "Myotub-related", |
| "N-glycanase_C", |
| "NAAA-beta", |
| "NAD-GH", |
| "NADH-u_ox-rdase", |
| "NADH5_C", |
| "NADH_4Fe-4S", |
| "NADH_dhqG_C", |
| "NADH_u_ox_C", |
| "NADHdh", |
| "NAD_Gly3P_dh_C", |
| "NAD_Gly3P_dh_N", |
| "NAD_binding_1", |
| "NAD_binding_10", |
| "NAD_binding_11", |
| "NAD_binding_2", |
| "NAD_binding_3", |
| "NAD_binding_5", |
| "NAD_binding_6", |
| "NAD_binding_7", |
| "NAD_binding_8", |
| "NAD_binding_9", |
| "NAD_kinase", |
| "NAD_synthase", |
| "NAGLU_C", |
| "NAGLU_N", |
| "NAGPA", |
| "NAGidase", |
| "NAPRTase", |
| "NAS", |
| "NAT", |
| "NDK", |
| "NHase_alpha", |
| "NHase_beta", |
| "NIF", |
| "NLPC_P60", |
| "NMO", |
| "NMT", |
| "NMT_C", |
| "NO_synthase", |
| "NPCBM", |
| "NPCBM_assoc", |
| "NQR2_RnfD_RnfE", |
| "NQRA_SLBB", |
| "NRDD", |
| "NTP_transf_2", |
| "NTP_transf_3", |
| "NTP_transf_9", |
| "NTP_transferase", |
| "NTPase_1", |
| "NUDIX", |
| "NUDIX-like", |
| "NadA", |
| "NanE", |
| "NeuB", |
| "NiFeSe_Hases", |
| "NiFe_hyd_SSU_C", |
| "Nitr_red_bet_C", |
| "Nitrate_red_del", |
| "Nitrate_red_gam", |
| "NmrA", |
| "NnrU", |
| "NosD", |
| "Nuc_deoxyrib_tr", |
| "Nucleotid_trans", |
| "Nudix_N_2", |
| "NusB", |
| "O-FucT", |
| "OAD_gamma", |
| "OB_NTP_bind", |
| "OCD_Mu_crystall", |
| "OHCU_decarbox", |
| "OKR_DC_1", |
| "OKR_DC_1_C", |
| "OMPdecase", |
| "OSR1_C", |
| "OTCace", |
| "OTCace_N", |
| "OTU", |
| "Octopine_DH", |
| "Omptin", |
| "OrfB_IS605", |
| "Orn_Arg_deC_N", |
| "Orn_DAP_Arg_deC", |
| "OsmC", |
| "Osmo_MPGsynth", |
| "Ost4", |
| "Oxidored-like", |
| "Oxidored_FMN", |
| "Oxidored_molyb", |
| "Oxidored_nitro", |
| "Oxidored_q2", |
| "Oxidored_q3", |
| "Oxidored_q4", |
| "Oxidored_q6", |
| "P-mevalo_kinase", |
| "P5CR_dimer", |
| "PA", |
| "PA14", |
| "PAD", |
| "PAD_porph", |
| "PAF-AH_p_II", |
| "PALP", |
| "PAP2", |
| "PAPS_reduct", |
| "PAP_assoc", |
| "PAP_central", |
| "PARG_cat", |
| "PB1", |
| "PBD", |
| "PBP5_C", |
| "PBP_dimer", |
| "PCO_ADO", |
| "PCP_red", |
| "PDEase_I", |
| "PDEase_II", |
| "PDH", |
| "PDT", |
| "PEMT", |
| "PEP-utilisers_N", |
| "PEP-utilizers", |
| "PEP-utilizers_C", |
| "PEPCK_ATP", |
| "PEPCK_C", |
| "PEPcase", |
| "PFK", |
| "PFL-like", |
| "PGAP1", |
| "PGI", |
| "PGK", |
| "PGM_PMM_I", |
| "PGM_PMM_II", |
| "PGM_PMM_III", |
| "PGM_PMM_IV", |
| "PGP_phosphatase", |
| "PG_binding_1", |
| "PH", |
| "PHB_depo_C", |
| "PHP", |
| "PI-PLC-X", |
| "PI-PLC-Y", |
| "PI3_PI4_kinase", |
| "PIG-H", |
| "PIG-P", |
| "PIGA", |
| "PIP5K", |
| "PK", |
| "PKD", |
| "PK_C", |
| "PLA1", |
| "PLA2G12", |
| "PLA2_B", |
| "PLAT", |
| "PLDc", |
| "PLDc_2", |
| "PMI_typeI", |
| "PMM", |
| "PMSR", |
| "PMT", |
| "PNGaseA", |
| "PNK3P", |
| "PNP_UDP_1", |
| "PNP_phzG_C", |
| "PNPase_C", |
| "PNTB", |
| "PNTB_4TM", |
| "POR", |
| "POR_N", |
| "PP2C", |
| "PPC", |
| "PPDK_N", |
| "PPK2", |
| "PPO1_DWL", |
| "PP_kinase", |
| "PP_kinase_C", |
| "PP_kinase_N", |
| "PRA-CH", |
| "PRA-PH", |
| "PRAI", |
| "PRK", |
| "PRMT5", |
| "PS-DH", |
| "PSS", |
| "PS_Dcarbxylase", |
| "PS_pyruv_trans", |
| "PTAC", |
| "PTA_PTB", |
| "PTE", |
| "PTPA", |
| "PTPLA", |
| "PTPS", |
| "PTase_Orf2", |
| "PUA", |
| "PUD", |
| "PYC_OADA", |
| "PYNP_C", |
| "P_proprotein", |
| "PaO", |
| "PaaA_PaaC", |
| "PagL", |
| "Palm_thioest", |
| "Pan_kinase", |
| "Pantoate_ligase", |
| "Pantoate_transf", |
| "Patatin", |
| "PcrB", |
| "PdxA", |
| "PdxJ", |
| "Pec_lyase", |
| "Pec_lyase_C", |
| "Pectate_lyase", |
| "Pectinesterase", |
| "Penicil_amidase", |
| "PepSY", |
| "PepX_C", |
| "Pep_deformylase", |
| "Peptidase_A24", |
| "Peptidase_A4", |
| "Peptidase_A8", |
| "Peptidase_C1", |
| "Peptidase_C11", |
| "Peptidase_C12", |
| "Peptidase_C13", |
| "Peptidase_C14", |
| "Peptidase_C15", |
| "Peptidase_C1_2", |
| "Peptidase_C2", |
| "Peptidase_C25", |
| "Peptidase_C26", |
| "Peptidase_C48", |
| "Peptidase_C50", |
| "Peptidase_C65", |
| "Peptidase_M1", |
| "Peptidase_M10", |
| "Peptidase_M10_C", |
| "Peptidase_M13", |
| "Peptidase_M13_N", |
| "Peptidase_M14", |
| "Peptidase_M15", |
| "Peptidase_M15_3", |
| "Peptidase_M17", |
| "Peptidase_M17_N", |
| "Peptidase_M18", |
| "Peptidase_M19", |
| "Peptidase_M2", |
| "Peptidase_M20", |
| "Peptidase_M22", |
| "Peptidase_M23", |
| "Peptidase_M24", |
| "Peptidase_M28", |
| "Peptidase_M29", |
| "Peptidase_M3", |
| "Peptidase_M32", |
| "Peptidase_M35", |
| "Peptidase_M4", |
| "Peptidase_M43", |
| "Peptidase_M48", |
| "Peptidase_M49", |
| "Peptidase_M4_C", |
| "Peptidase_M7", |
| "Peptidase_M8", |
| "Peptidase_M9", |
| "Peptidase_S10", |
| "Peptidase_S11", |
| "Peptidase_S13", |
| "Peptidase_S15", |
| "Peptidase_S24", |
| "Peptidase_S26", |
| "Peptidase_S32", |
| "Peptidase_S51", |
| "Peptidase_S55", |
| "Peptidase_S58", |
| "Peptidase_S6", |
| "Peptidase_S66", |
| "Peptidase_S7", |
| "Peptidase_S9_N", |
| "Peripla_BP_6", |
| "Peroxidase_2", |
| "Peroxidase_ext", |
| "PfkB", |
| "PgpA", |
| "Phe_hydrox_dim", |
| "Phenol_Hydrox", |
| "PhnG", |
| "PhnH", |
| "PhnI", |
| "PhnJ", |
| "PhoD", |
| "Phos_pyr_kin", |
| "Phosphodiest", |
| "Phosphoesterase", |
| "Phospholip_A2_1", |
| "Phosphorylase", |
| "Photo_RC", |
| "PhyH", |
| "Phytase", |
| "Phytochelatin", |
| "PhzC-PhzF", |
| "PilZ", |
| "Pkinase_C", |
| "PolyA_pol", |
| "PolyA_pol_arg_C", |
| "Polyketide_cyc", |
| "Polyketide_cyc2", |
| "Polysacc_deac_1", |
| "Polysacc_lyase", |
| "Polysacc_syn_2C", |
| "Polysacc_synt_4", |
| "Porphobil_deam", |
| "Porphobil_deamC", |
| "Ppx-GppA", |
| "Prenylcys_lyase", |
| "Prenyltrans", |
| "Prenyltransf", |
| "Pribosyl_synth", |
| "Pribosyltran", |
| "Pribosyltran_N", |
| "Prismane", |
| "Pro-kuma_activ", |
| "Pro_3_hydrox_C", |
| "Pro_Al_protease", |
| "Pro_CA", |
| "Pro_dh", |
| "Pro_isomerase", |
| "Pro_racemase", |
| "Propep_M14", |
| "Proteasome", |
| "Proteasome_A_N", |
| "Proton_antipo_N", |
| "PrpF", |
| "Pterin_4a", |
| "Pterin_bind", |
| "PurS", |
| "Put_Phosphatase", |
| "Putative_PNPOx", |
| "PvlArgDC", |
| "Pyr_redox", |
| "Pyr_redox_2", |
| "Pyr_redox_3", |
| "Pyr_redox_dim", |
| "Pyridox_ox_2", |
| "Pyridox_oxase_2", |
| "Pyridoxal_deC", |
| "Pyrophosphatase", |
| "QRPTase_C", |
| "QRPTase_N", |
| "QueC", |
| "QueF", |
| "QueF_N", |
| "Queuosine_synth", |
| "RAP", |
| "RCC_reductase", |
| "RGP", |
| "RNR_N", |
| "ROK", |
| "RPE65", |
| "RVP", |
| "RVT_thumb", |
| "Rad4", |
| "Rad60-SLD", |
| "Radical_SAM", |
| "Raffinose_syn", |
| "RasGEF", |
| "Redoxin", |
| "Reductase_C", |
| "RelA_SpoT", |
| "Reprolysin_3", |
| "Reprolysin_5", |
| "Reticulon", |
| "RhgB_N", |
| "Rhodanese", |
| "Rhomboid", |
| "Rhomboid_N", |
| "RibD_C", |
| "Rib_5-P_isom_A", |
| "Ribonuc_red_lgC", |
| "Ribonuc_red_lgN", |
| "Ribonuc_red_sm", |
| "Ribophorin_I", |
| "Ribophorin_II", |
| "Ribul_P_3_epim", |
| "Ricin_B_lectin", |
| "Rieske", |
| "Ring_hydroxyl_A", |
| "Ring_hydroxyl_B", |
| "Rnf-Nqr", |
| "Rotamase", |
| "Rotamase_2", |
| "RraA-like", |
| "RuBisCO_large", |
| "RuBisCO_small", |
| "Rubredoxin", |
| "Rubrerythrin", |
| "S-AdoMet_synt_C", |
| "S-AdoMet_synt_M", |
| "S-AdoMet_synt_N", |
| "S-methyl_trans", |
| "S6PP", |
| "SAICAR_synt", |
| "SAM_MT", |
| "SAM_adeno_trans", |
| "SAM_decarbox", |
| "SASA", |
| "SATase_N", |
| "SBP_bac_1", |
| "SCP2", |
| "SDH_alpha", |
| "SDH_beta", |
| "SE", |
| "SET", |
| "SGL", |
| "SH2", |
| "SH3_2", |
| "SH3_3", |
| "SH3_5", |
| "SH3_9", |
| "SHMT", |
| "SIP", |
| "SIS", |
| "SIS_2", |
| "SKI", |
| "SLBB", |
| "SLT", |
| "SNO", |
| "SOR_SNZ", |
| "SPOR", |
| "SPOUT_MTase", |
| "SQHop_cyclase_C", |
| "SQHop_cyclase_N", |
| "SQS_PSY", |
| "START", |
| "STT3", |
| "SUA5", |
| "Sacchrp_dh_C", |
| "Sacchrp_dh_NADP", |
| "Salt_tol_Pase", |
| "SapB_1", |
| "Scytalone_dh", |
| "Se-cys_synth_N", |
| "SelR", |
| "Semialdhyde_dh", |
| "Semialdhyde_dhC", |
| "Shikimate_DH", |
| "Shikimate_dh_N", |
| "SicP-binding", |
| "Sirohm_synth_C", |
| "Sirohm_synth_M", |
| "SnoaL", |
| "SnoaL_2", |
| "SnoaL_4", |
| "Sod_Cu", |
| "Sod_Fe_C", |
| "Sod_Fe_N", |
| "Sod_Ni", |
| "Sortase", |
| "SoxD", |
| "SoxG", |
| "Spb1_C", |
| "Spermine_synth", |
| "SpoIIE", |
| "Stealth_CR2", |
| "Sterile", |
| "Steroid_dh", |
| "Sterol_MT_C", |
| "Str_synth", |
| "Succ_DH_flav_C", |
| "Sucrose_synth", |
| "SufE", |
| "Sugar-bind", |
| "Sugar_tr", |
| "Sulfatase", |
| "Sulfotransfer_1", |
| "Sulfotransfer_2", |
| "Sulfotransfer_3", |
| "SurA_N", |
| "SurE", |
| "Syja_N", |
| "Synthase_beta", |
| "TAL_FSA", |
| "TENA_THI-4", |
| "TGS", |
| "THDPS_N_2", |
| "THF_DHG_CYH", |
| "THF_DHG_CYH_C", |
| "THUMP", |
| "TIM", |
| "TK", |
| "TMP-TENI", |
| "TOBE", |
| "TPK_B1_binding", |
| "TPK_catalytic", |
| "TPMT", |
| "TPP_enzyme_C", |
| "TPP_enzyme_M", |
| "TPP_enzyme_N", |
| "TRAM_LAG1_CLN8", |
| "TSCPD", |
| "TTL", |
| "Tagatose_6_P_K", |
| "Tannase", |
| "TaqI_C", |
| "TauD", |
| "Tautomerase", |
| "TehB", |
| "Thaumatin", |
| "ThiC-associated", |
| "ThiC_Rad_SAM", |
| "ThiG", |
| "ThiI", |
| "ThiP_synth", |
| "ThiS", |
| "Thioesterase", |
| "Thiolase_C", |
| "Thiolase_N", |
| "Thioredoxin", |
| "Thioredoxin_2", |
| "Thioredoxin_3", |
| "Thioredoxin_8", |
| "Thr_synth_N", |
| "Thy1", |
| "Thymidylat_synt", |
| "Thymidylate_kin", |
| "TilS_C", |
| "Tim17", |
| "Tocopherol_cycl", |
| "Topo-VIb_trans", |
| "Topo_C_assoc", |
| "Topo_Zn_Ribbon", |
| "Transferase", |
| "Transglut_core", |
| "Transglut_prok", |
| "Transgly", |
| "Transket_pyr", |
| "Transketolase_C", |
| "Transketolase_N", |
| "Transpeptidase", |
| "Transthyretin", |
| "Trehalase", |
| "Trehalase_Ca-bi", |
| "Trehalose_PPase", |
| "Trm112p", |
| "Trp_DMAT", |
| "Trp_dioxygenase", |
| "Trp_syntA", |
| "TruB-C_2", |
| "TruB_N", |
| "TrwC", |
| "Trypsin", |
| "TylF", |
| "Tyrosinase", |
| "UBA_3", |
| "UCH", |
| "UCH_1", |
| "UDPGP", |
| "UDPGT", |
| "UDPG_MGDP_dh", |
| "UDPG_MGDP_dh_C", |
| "UDPG_MGDP_dh_N", |
| "UME", |
| "UPF0004", |
| "UPF0052", |
| "UPRTase", |
| "UQ_con", |
| "URO-D", |
| "USP7_C2", |
| "USP7_ICP0_bdg", |
| "USP8_dimer", |
| "UbiA", |
| "UbiD", |
| "Ubie_methyltran", |
| "UnbV_ASPIC", |
| "Urease_alpha", |
| "Urease_beta", |
| "Urease_gamma", |
| "Ureidogly_lyase", |
| "Uricase", |
| "Urocanase", |
| "Usp", |
| "UxaC", |
| "UxuA", |
| "VCBS", |
| "VIT", |
| "VKG_Carbox", |
| "VKOR", |
| "VanY", |
| "VitK2_biosynth", |
| "Vps4_C", |
| "WBS_methylT", |
| "WES_acyltransf", |
| "WSC", |
| "WW", |
| "Wyosine_form", |
| "X8", |
| "XFP", |
| "XFP_C", |
| "XFP_N", |
| "XdhC_C", |
| "XdhC_CoxI", |
| "YHS", |
| "Y_phosphatase", |
| "Y_phosphatase2", |
| "Y_phosphatase3", |
| "Yae1_N", |
| "YbgT_YccB", |
| "YdjC", |
| "YgbB", |
| "YhhN", |
| "YjeF_N", |
| "YmdB", |
| "YqaJ", |
| "Zeta_toxin", |
| "Zn_dep_PLPC", |
| "bact-PGI_C", |
| "dCMP_cyt_deam_1", |
| "dCMP_cyt_deam_2", |
| "dNK", |
| "dUTPase", |
| "dUTPase_2", |
| "fn3_3", |
| "gag_pre-integrs", |
| "hGDE_N", |
| "iPGM_N", |
| "ketoacyl-synt", |
| "malic", |
| "peroxidase", |
| "polyprenyl_synt", |
| "rhaM", |
| "tRNA-synt_2", |
| "zf-UBP", |
| ] |
|
|
|
|
| def __init__(self, **kwargs): |
| super().__init__(**kwargs) |
| |
| |
| |
| |
| domain_tokens = [f"<{domain}>" for domain in self.BGC_DOMAINS] |
| domain_tokens_dict = {"additional_special_tokens": domain_tokens} |
| self.add_special_tokens(domain_tokens_dict) |
|
|
|
|
