Add ProSST structure tokenizer files for rem2 / VenusREM2

README.md

@@ -1,3 +1,24 @@
 ---
 license: apache-2.0
+tags:
+- protein
+- structure
+- ProSST
+- rem2
+- VenusREM2
 ---
+
+# ProSST structure tokenizer (rem2 / VenusREM2)
+
+Structure-token assets used by [`rem2`](https://github.com/tyang816/VenusREM2) when you run `--model prosst` or `--model venusrem2`.
+
+On first use, rem2 downloads only the files it needs into `~/.cache/rem2/weights/prosst/static/`:
+
+| File | Used by |
+|------|---------|
+| `static/AE.pt` | All ProSST vocab sizes |
+| `static/{K}.joblib` | `--model prosst-{K}` and VenusREM2 members. K ∈ {20, 64, 128, 512, 1024, 2048, 4096} |
+
+VenusREM2's official ensemble uses K ∈ {20, 128, 512, 1024, 2048, 4096} (not 64).
+
+These files are the **local structure tokenizer** (`AE.pt` + k-means vocab). They are not the ProSST language-model weights.

static/1024.joblib

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a761adc0b83c4031a5b31a89eeb6275c7dba2ccec9f9f6cbfe181a0ab95c82d5
+size 21040620

static/128.joblib

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:951840db5917fe112d4d4a2b8fbfd1357deacf5c67e1c27bba8d0d31c386cb60
+size 19205612

static/20.joblib

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f98a1d678c0a040e608d096806cc430d29f1ebb1e82f6405d6d6c4339491fc83
+size 18984427

static/2048.joblib

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7e4a47885983b9f9adc1c3c8a9b549fd4b77a32685e1ffbad592ae6fccc5a20b
+size 23137772

static/4096.joblib

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:391ad839ef5019058486661547e34cea6e94234e3d52526659ee43bd1460d97c
+size 27332076

static/512.joblib

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:eacad4ba5aa1475a25fe156d81274cb93aaf737aa1a8fad2d2b08580ed2b719a
+size 19992044

static/64.joblib

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:571518ae435f1ec3bbd79a89cbfb9d75303008b431a90224e212724d34317cc2
+size 19074540

static/AE.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:57cf97ace00c8e0413e3c2a1407d299d86d99ed22982202c1bc652f7f762b3a3
+size 23669861