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viro-bert
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Viro-BERT

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distilbert
biology
genomics
viral-classification
transformer
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Upload config.json

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config.json ADDED
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+ {
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+ "model_type": "distilbert",
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+ "architecture": "BiologicalDistilBERT",
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+ "k_mer": 3,
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+ "stride": 3,
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+ "chunk_len": 512,
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+ "overlap": 50,
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+ "num_classes": 14,
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+ "label_to_id": {
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+ "Dengue": 0,
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+ "EnteroA": 1,
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+ "EnteroB": 2,
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+ "HBV": 3,
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+ "HCV": 4,
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+ "HPV": 5,
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+ "HSV-1": 6,
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+ "IAV": 7,
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+ "IBV": 8,
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+ "ICV": 9,
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+ "MPV": 10,
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+ "SFTS": 11,
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+ "WNV": 12,
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+ "Zika": 13
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+ },
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+ "id_to_label": {
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+ "0": "Dengue",
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+ "1": "EnteroA",
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+ "2": "EnteroB",
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+ "3": "HBV",
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+ "4": "HCV",
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+ "5": "HPV",
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+ "6": "HSV-1",
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+ "7": "IAV",
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+ "8": "IBV",
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+ "9": "ICV",
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+ "10": "MPV",
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+ "11": "SFTS",
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+ "12": "WNV",
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+ "13": "Zika"
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+ },
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+ "vocab": {
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+ "[PAD]": 0,
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+ "[UNK]": 1,
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+ "[CLS]": 2,
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+ "[SEP]": 3,
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+ "[MASK]": 4,
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+ "AAA": 5,
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+ "AAC": 6,
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+ "AAG": 7,
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+ "AAN": 8,
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+ "AAT": 9,
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+ "ACA": 10,
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+ "ACC": 11,
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+ "ACG": 12,
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+ "ACN": 13,
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+ "ACT": 14,
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+ "AGA": 15,
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+ "AGC": 16,
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+ "AGG": 17,
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+ "AGN": 18,
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+ "AGT": 19,
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+ "ANA": 20,
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+ "ANC": 21,
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+ "ANG": 22,
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+ "ANN": 23,
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+ "ANT": 24,
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+ "ATA": 25,
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+ "ATC": 26,
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+ "ATG": 27,
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+ "ATN": 28,
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+ "ATT": 29,
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+ "CAA": 30,
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+ "CAC": 31,
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+ "CAG": 32,
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+ "CAN": 33,
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+ "CAT": 34,
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+ "CCA": 35,
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+ "CCC": 36,
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+ "CCG": 37,
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+ "CCN": 38,
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+ "CCT": 39,
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+ "CGA": 40,
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+ "CGC": 41,
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+ "CGG": 42,
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+ "CGN": 43,
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+ "CGT": 44,
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+ "CNA": 45,
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+ "CNC": 46,
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+ "CNG": 47,
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+ "CNN": 48,
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+ "CNT": 49,
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+ "CTA": 50,
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+ "CTC": 51,
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+ "CTG": 52,
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+ "CTN": 53,
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+ "CTT": 54,
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+ "GAA": 55,
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+ "GAC": 56,
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+ "GAG": 57,
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+ "GAN": 58,
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+ "GAT": 59,
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+ "GCA": 60,
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+ "GCC": 61,
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+ "GCG": 62,
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+ "GCN": 63,
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+ "GCT": 64,
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+ "GGA": 65,
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+ "GGC": 66,
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+ "GGG": 67,
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+ "GGN": 68,
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+ "GGT": 69,
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+ "GNA": 70,
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+ "GNC": 71,
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+ "GNG": 72,
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+ "GNN": 73,
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+ "GNT": 74,
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+ "GTA": 75,
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+ "GTC": 76,
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+ "GTG": 77,
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+ "GTN": 78,
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+ "GTT": 79,
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+ "NAA": 80,
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+ "NAC": 81,
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+ "NAG": 82,
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+ "NAN": 83,
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+ "NAT": 84,
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+ "NCA": 85,
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+ "NCC": 86,
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+ "NCG": 87,
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+ "NCN": 88,
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+ "NCT": 89,
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+ "NGA": 90,
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+ "NGC": 91,
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+ "NGG": 92,
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+ "NGN": 93,
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+ "NGT": 94,
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+ "NNA": 95,
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+ "NNC": 96,
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+ "NNG": 97,
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+ "NNN": 98,
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+ "NNT": 99,
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+ "NTA": 100,
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+ "NTC": 101,
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+ "NTG": 102,
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+ "NTN": 103,
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+ "NTT": 104,
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+ "TAA": 105,
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+ "TAC": 106,
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+ "TAG": 107,
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+ "TAN": 108,
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+ "TAT": 109,
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+ "TCA": 110,
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+ "TCC": 111,
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+ "TCG": 112,
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+ "TCN": 113,
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+ "TCT": 114,
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+ "TGA": 115,
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+ "TGC": 116,
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+ "TGG": 117,
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+ "TGN": 118,
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+ "TGT": 119,
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+ "TNA": 120,
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+ "TNC": 121,
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+ "TNG": 122,
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+ "TNN": 123,
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+ "TNT": 124,
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+ "TTA": 125,
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+ "TTC": 126,
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+ "TTG": 127,
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+ "TTN": 128,
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+ "TTT": 129
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+ }
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+ }