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README.md

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 # CI-FM: Cellular Interaction Foundation Model
 
 This is the pytorch implementation of the CI-FM model -- an AI model that can simulate the cellular activity within a tissue (AI virtual tissue). The signature functions of CI-FM are:
-- Embedding of celllular microenvironments ```embeddings = model.embed(adata)``` (Figure below panel D top);
-- Inference of cellular gene expressions at a certain microenvironment ```expressions = model.predict_cells_at_locations(adata, rand_loc)``` (Figure below panel D bottom).
+- **Embedding** of celllular microenvironments ```embeddings = model.embed(adata)``` (Figure below panel D top);
+- **Inference** of cellular gene expressions at a certain microenvironment ```expressions = model.predict_cells_at_locations(adata, rand_loc)``` (Figure below panel D bottom).
 The detailed usage of the model can be found in the [tutorial](https://huggingface.co/ynyou/CIFM/blob/main/test.ipynb).
 
 ![](./figures/cifm.png)