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README.md
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@@ -17,7 +17,12 @@ This is the PyTorch implementation of the CI-FM model -- an AI model that can si
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- **Embedding** of celllular microenvironments via ```embeddings = model.embed(adata)``` (Figure below panel D top);
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- **Inference** of cellular gene expressions at a certain microenvironment via ```expressions = model.predict_cells_at_locations(adata, rand_loc)``` (Figure below panel D bottom).
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Before running the tutorial, please set up an environment following the [instruction](https://huggingface.co/ynyou/CIFM#environment).
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More information about the model can be found in the [preprint]().
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- **Embedding** of celllular microenvironments via ```embeddings = model.embed(adata)``` (Figure below panel D top);
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- **Inference** of cellular gene expressions at a certain microenvironment via ```expressions = model.predict_cells_at_locations(adata, rand_loc)``` (Figure below panel D bottom).
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So after cloning the model and get into the model directory:
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```
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git clone https://huggingface.co/ynyou/CIFM
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cd CIFM
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```
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the detailed usage of the model can be found in the [tutorial](https://huggingface.co/ynyou/CIFM/blob/main/test.ipynb).
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Before running the tutorial, please set up an environment following the [instruction](https://huggingface.co/ynyou/CIFM#environment).
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More information about the model can be found in the [preprint]().
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