ynyou
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CIFM

Mask Generation

model_hub_mixin

pytorch_model_hub_mixin

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Yuning You commited on Jan 24, 2025

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 ## Overview
 This is the PyTorch implementation of the CI-FM model -- an AI model that can simulate the biological activities within a living tissue (AI virtual tissue).
-The current version of CI-FM has 138M parameters (current version) and is trained on around 23M cells of spatial genomics. The signature functions of CI-FM are:
 - **Embedding** of celllular microenvironments via ```embeddings = model.embed(adata)``` (Figure below panel D top);
 - **Inference** of cellular gene expressions within a certain microenvironment via ```expressions = model.predict_cells_at_locations(adata, rand_loc)``` (Figure below panel D bottom).

 ## Overview
 This is the PyTorch implementation of the CI-FM model -- an AI model that can simulate the biological activities within a living tissue (AI virtual tissue).
+The current version of CI-FM has 138M parameters and is trained on around 23M cells of spatial genomics. The signature functions of CI-FM are:
 - **Embedding** of celllular microenvironments via ```embeddings = model.embed(adata)``` (Figure below panel D top);
 - **Inference** of cellular gene expressions within a certain microenvironment via ```expressions = model.predict_cells_at_locations(adata, rand_loc)``` (Figure below panel D bottom).