| { |
| "encoder": "esm3", |
| "family": "patched", |
| "target": "esm3_inproc", |
| "weights": "pretrained", |
| "rule": "final trunk residue embeddings, sequence and structure tracks", |
| "env": "base", |
| "checkpoint": "esm3-sm-open-v1/data/weights/esm3_sm_open_v1.pth", |
| "dtype": "bfloat16", |
| "n_parameters": 1401735748, |
| "inputs_passed": "sequence track: true residues; structure track: VQ-VAE tokens from the real backbone (N, CA, C, O, CB) plus coordinates for geometric attention; function, SASA and secondary-structure tracks at their defaults", |
| "patch": "patched/esm3_inproc.py", |
| "dataset": "protcompass/confirmation/labels_v44.h5", |
| "date": "2026-09-22 16:06", |
| "seconds": 99.8, |
| "n_domains": 1990, |
| "dim": 1536, |
| "row_convention": "row r of residue_fp16.npy is row r of residue/* in labels.h5", |
| "health": { |
| "n_rows": 1990, |
| "dim": 1536, |
| "nan_values": 0, |
| "all_zero_rows": 0, |
| "distinct_rows": 1990, |
| "numerical_rank": 1536, |
| "max_abs": 9211.4287109375 |
| }, |
| "input_audit": { |
| "rel_change_jitter_1A": 0.509009407826544, |
| "rel_change_coord_swap": 0.4000935921683898, |
| "rel_change_seq_shuffle": 0.35550636124077734, |
| "rel_change_rigid_motion": 0.0018285819013779668, |
| "verdict": "pass" |
| } |
| } |
|
|
