| { |
| "encoder": "ankh_base", |
| "family": "hf_plm", |
| "target": "ElnaggarLab/ankh-base", |
| "weights": "pretrained", |
| "rule": "final residue states, special tokens removed, masked mean over valid residues", |
| "env": "base", |
| "checkpoint": "ElnaggarLab/ankh-base", |
| "checkpoint_revision": "d99cb6b966530dfc2ae96bc69d9255c2a07308b0", |
| "dtype": "float32", |
| "hidden_size": 768, |
| "n_layers": 48, |
| "n_parameters": 453170688, |
| "inputs_passed": "amino-acid sequence only", |
| "task": "ec_classification", |
| "date": "2026-09-22 17:00", |
| "seconds": 59.1, |
| "pooling": "masked mean over all residues of the chain", |
| "manifest": "manifest/ec_classification.csv", |
| "rows": "held-out cohort: protcompass/confirmation_downstream/ids_ec_classification.txt", |
| "structure_coverage": "every row has a structure file whose sequence equals the task sequence (see manifest/coverage.csv)", |
| "n_per_split": { |
| "test": 2000 |
| }, |
| "health": { |
| "n_rows": 2000, |
| "dim": 768, |
| "nan_values": 0, |
| "all_zero_rows": 0, |
| "distinct_rows": 1674, |
| "numerical_rank": 768, |
| "max_abs": 0.7743563652038574 |
| }, |
| "input_audit": { |
| "rel_change_jitter_1A": 0.0, |
| "rel_change_coord_swap": 0.0, |
| "rel_change_seq_shuffle": 0.5002829140921271, |
| "rel_change_rigid_motion": 0.0, |
| "verdict": "pass" |
| } |
| } |
|
|
